Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09]
1,499 sequences; 18,613,147 total letters
Query= NC_031129.1
Length=103445
Score E
Sequences producing significant alignments: (Bits) Value
seq1280 158 8e-34
>seq1280
Length=27451
Score = 158 bits (174), Expect = 8e-34
Identities = 399/593 (67%), Gaps = 28/593 (5%)
Strand=Plus/Minus
Query 58816 CAGCGAGTTGCGCGCCTCACCTTTGTTCAGGCCGGCATGCACGCGGCGGCGCAGTTCAAC 58875
||||| || | ||||| || ||||| || ||| || ||||||| | || || |
Sbjct 27034 CAGCGCGTGATGGGCCTCGCCCTTGTTGAGCCCGATCTGGGCGCGGCGTTGGAGATCGGC 26975
Query 58876 ACTTTGCAGCCAGTCCAGGATGAACAGCGTGCGCTCGATCCGGCCCAGCTCGCGCAGGGC 58935
| | |||||| | ||||||||||| ||||||| ||||| | || ||||| ||
Sbjct 26974 GTCCAGAATCCAGTCGATCATGAACAGCGTCCGCTCGACGCGGCCTACTTCCCGCAGAGC 26915
Query 58936 CACGGCCAGTCCGTTCTGGCGCGGGTAGCTGCCGAGCTTGCGCAGCATCAG-CGAGGCGG 58994
||||||| | ||||| ||||| ||| | |||||||||||| ||| | | |||||
Sbjct 26914 TGTGGCCAGTTCATTCTGCCGCGGATAGGAGGCGAGCTTGCGCAAAATCTGGCTAGGCG- 26856
Query 58995 TGACGGTGCC--CTGCTTGA-TCGAGCTGGCCAGGCGCAGGATGTCGTCCCAGTGG-GCA 59050
|| |||| | ||| | | | | ||| | ||||||||| ||| ||||| | ||
Sbjct 26855 ---CGATGCCTCCGGCTGCAATGGTGGCGGCGATGCGCAGGATATCGGGCCAGTTGCGCT 26799
Query 59051 CGCACGTG-CTTGATGTTCAGGGTGCCGCCGATCAGCGGGCGCAACGTCGGGTAGGCTTG 59109
|| | || | |||| | | |||||||||||| | ||||| || ||| |
Sbjct 26798 CGATCATGGCCTGAT--TGATTTTGCCGCCGATCATGGCCCGCAA------GTGGGCCGG 26747
Query 59110 CACGCCCTGCGGC----ACGTACAGCTTGGTTTCGCCG--AGGTCGCGGATGCGCGGCGC 59163
| || || || ||| | || | || | || ||||||||||||||||||||
Sbjct 26746 CGCGGCCGATGGATTGAACGCATAGAGCCGCTTGGACGGCAGGTCGCGGATGCGCGGCGC 26687
Query 59164 GAAGCGGAAGCCTAGCA-GGTGCATCAGGGCAAAGACGTGATCGGTGAAGCCGGCCGTGT 59222
||| ||| |||| || | || |||| || ||||||||||||||||||||||| | || |
Sbjct 26686 GAATCGGTAGCCGAGAATGGCGCATGCGG-CAAAGACGTGATCGGTGAAGCCGCCTGTAT 26628
Query 59223 CGGTGTAGTGCTCCTCGATCCGCAGGTCGGACTCGTGGTACAGCAGGCCGTCGAGCACAT 59282
||| | | ||||| || | || ||| |||| |||||||||||||| | |
Sbjct 26627 CGGCGAACTGCTCGCGAATATGGCGGCCGGCATCGTTCATGAGCAGGCCGTCGAGGATGT 26568
Query 59283 AGGTGGAATCGC-GGACGCCGACATTCACCACGCGGGTGCTGAACGGCGCGTACTGGTCG 59341
||| | |||| | || || || | ||| |||| ||||||||| || |||||
Sbjct 26567 AGGGAGCTTCGCTCGCCGTCG-CAGGAATCACCTGGGTCGCGAACGGCGCATATTGGTCC 26509
Query 59342 GAGATATGGGTATAGAACAGCCGTCCCGGCTCGCTACCGTACTTCGGGTTGAC 59394
|||| ||| ||||| | | ||||| | ||||| |||| ||||||
Sbjct 26508 GAGACGTGGCTATAGGCTTTCAGACCCGGGGTATTGCCGTATTTCGCGTTGAC 26456
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 330893154781834
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |