Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq1280 158 8e-34 >seq1280 Length=27451 Score = 158 bits (174), Expect = 8e-34 Identities = 399/593 (67%), Gaps = 28/593 (5%) Strand=Plus/Minus Query 58816 CAGCGAGTTGCGCGCCTCACCTTTGTTCAGGCCGGCATGCACGCGGCGGCGCAGTTCAAC 58875 ||||| || | ||||| || ||||| || ||| || ||||||| | || || | Sbjct 27034 CAGCGCGTGATGGGCCTCGCCCTTGTTGAGCCCGATCTGGGCGCGGCGTTGGAGATCGGC 26975 Query 58876 ACTTTGCAGCCAGTCCAGGATGAACAGCGTGCGCTCGATCCGGCCCAGCTCGCGCAGGGC 58935 | | |||||| | ||||||||||| ||||||| ||||| | || ||||| || Sbjct 26974 GTCCAGAATCCAGTCGATCATGAACAGCGTCCGCTCGACGCGGCCTACTTCCCGCAGAGC 26915 Query 58936 CACGGCCAGTCCGTTCTGGCGCGGGTAGCTGCCGAGCTTGCGCAGCATCAG-CGAGGCGG 58994 ||||||| | ||||| ||||| ||| | |||||||||||| ||| | | ||||| Sbjct 26914 TGTGGCCAGTTCATTCTGCCGCGGATAGGAGGCGAGCTTGCGCAAAATCTGGCTAGGCG- 26856 Query 58995 TGACGGTGCC--CTGCTTGA-TCGAGCTGGCCAGGCGCAGGATGTCGTCCCAGTGG-GCA 59050 || |||| | ||| | | | | ||| | ||||||||| ||| ||||| | || Sbjct 26855 ---CGATGCCTCCGGCTGCAATGGTGGCGGCGATGCGCAGGATATCGGGCCAGTTGCGCT 26799 Query 59051 CGCACGTG-CTTGATGTTCAGGGTGCCGCCGATCAGCGGGCGCAACGTCGGGTAGGCTTG 59109 || | || | |||| | | |||||||||||| | ||||| || ||| | Sbjct 26798 CGATCATGGCCTGAT--TGATTTTGCCGCCGATCATGGCCCGCAA------GTGGGCCGG 26747 Query 59110 CACGCCCTGCGGC----ACGTACAGCTTGGTTTCGCCG--AGGTCGCGGATGCGCGGCGC 59163 | || || || ||| | || | || | || |||||||||||||||||||| Sbjct 26746 CGCGGCCGATGGATTGAACGCATAGAGCCGCTTGGACGGCAGGTCGCGGATGCGCGGCGC 26687 Query 59164 GAAGCGGAAGCCTAGCA-GGTGCATCAGGGCAAAGACGTGATCGGTGAAGCCGGCCGTGT 59222 ||| ||| |||| || | || |||| || ||||||||||||||||||||||| | || | Sbjct 26686 GAATCGGTAGCCGAGAATGGCGCATGCGG-CAAAGACGTGATCGGTGAAGCCGCCTGTAT 26628 Query 59223 CGGTGTAGTGCTCCTCGATCCGCAGGTCGGACTCGTGGTACAGCAGGCCGTCGAGCACAT 59282 ||| | | ||||| || | || ||| |||| |||||||||||||| | | Sbjct 26627 CGGCGAACTGCTCGCGAATATGGCGGCCGGCATCGTTCATGAGCAGGCCGTCGAGGATGT 26568 Query 59283 AGGTGGAATCGC-GGACGCCGACATTCACCACGCGGGTGCTGAACGGCGCGTACTGGTCG 59341 ||| | |||| | || || || | ||| |||| ||||||||| || ||||| Sbjct 26567 AGGGAGCTTCGCTCGCCGTCG-CAGGAATCACCTGGGTCGCGAACGGCGCATATTGGTCC 26509 Query 59342 GAGATATGGGTATAGAACAGCCGTCCCGGCTCGCTACCGTACTTCGGGTTGAC 59394 |||| ||| ||||| | | ||||| | ||||| |||| |||||| Sbjct 26508 GAGACGTGGCTATAGGCTTTCAGACCCGGGGTATTGCCGTATTTCGCGTTGAC 26456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330893154781834