Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq890 96.9 4e-15 seq1300 87.8 2e-12 seq966 87.8 2e-12 seq949 82.4 9e-11 seq733 82.4 9e-11 >seq890 Length=125401 Score = 96.9 bits (106), Expect = 4e-15 Identities = 77/90 (86%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 158115 TATGGAAAGGTGGTCGAGTGGTTGATGGCTCTGGTCTTGAAAACCAGCGA-AGTGAGAG- 158172 || |||| |||| ||||||||| | ||| |||||||||||||||||||| ||||||| Sbjct 24557 TAAGGAAGTGTGGCCGAGTGGTTTAAGGCACTGGTCTTGAAAACCAGCGACGGTGAGAGC 24498 Query 158173 CTTCCGTGGGTTCGAATCCCACCCTTTCCG 158202 | ||||||||||||||||||||| ||||| Sbjct 24497 CGTCCGTGGGTTCGAATCCCACCGCTTCCG 24468 >seq1300 Length=673 Score = 87.8 bits (96), Expect = 2e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 17866 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGTCCG 17921 ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 145 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCGTCGGTTCGACTCCG 90 >seq966 Length=90452 Score = 87.8 bits (96), Expect = 2e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 17866 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGTCCG 17921 ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 90309 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCGTCGGTTCGACTCCG 90364 >seq949 Length=99569 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/72 (86%), Gaps = 2/72 (3%) Strand=Plus/Minus Query 18376 TGTCCGAGTGGTTAATGGAGGCGGACTGTAAATCCGCTGGCTCTGCCTACGGGGGTTCAA 18435 || |||||||||||| || | ||||||||||||||| ||||| |||||||| ||||||| Sbjct 1490 TGCCCGAGTGGTTAAAGGGGACGGACTGTAAATCCGTTGGCTATGCCTACGTTGGTTCAA 1431 Query 18436 ATCC--CTCCCT 18445 |||| |||||| Sbjct 1430 ATCCAACTCCCT 1419 >seq733 Length=265776 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 17859 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 17918 |||| ||||||||||||||||||||| ||| | ||| ||| || ||||||||||||| | Sbjct 182022 GGGGCTTTAGCTCAGTTGGTAGAGCGCTTGCATGGCATGCAAGAGGTCAGCGGTTCGACT 181963 Query 17919 CCGCTATTCTCCA 17931 |||||| ||||| Sbjct 181962 CCGCTAAGCTCCA 181950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596296026693840