Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq738 122 2e-22 seq827 116 8e-21 seq739 95.1 3e-14 seq1095 84.2 5e-11 >seq738 Length=4497 Score = 122 bits (134), Expect = 2e-22 Identities = 254/373 (68%), Gaps = 8/373 (2%) Strand=Plus/Minus Query 301420 ATGCTTAAAATGGACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACAT 301479 |||| ||| | ||||| ||||| || || ||||| || || ||||| || ||||||| Sbjct 4332 ATGCAAAAATTTGACCCTTATATTAATGTTGATCCAGGTACTATGAGTCCTTATCAACAT 4273 Query 301480 GGAGAAGTGTTCGTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAA 301539 || ||||| | || || ||||||||||||||| ||| | ||| | || || || ||| Sbjct 4272 GGTGAAGTATATGTAACTAGTGATGGTGCTGAAACTGATTTAGATTTAGGTCATTATGAA 4213 Query 301540 CGTTTCACTTCAT-TAACCCTTAAGCGTGAAAGTAATTTTACGACTGGCCAAGTTTATTT 301598 ||||| | || || || || | | || ||| |||| | || |||| || Sbjct 4212 CGTTTTA-TTGATGAAAATCTGACTAGAGACTCCAATATTACTGCCGGAAAAGTATACCA 4154 Query 301599 AAAAGTTATCGAAAATGAACGCGAAGGTAGCTATCTCGGAAAGACGGTGCAAGTTGTTCC 301658 || ||| | |||| |||||||| ||| ||| || || || || |||||||| || Sbjct 4153 AACTGTTTTAAAAAAGGAACGCGATGGTTTTTATGAAGGGAAAACTGTACAAGTTGTACC 4094 Query 301659 CCACATCACCGATGAAATCAAAAGA-AGAATTCACATTGCG-GCTGAA----AAATCAGA 301712 || | || |||||||| |||| | | | || ||| || | || || | || Sbjct 4093 ACATGTTACTGATGAAATTAAAAAACATATTTTTAATTCCGCAATTAATAGTAAGGCTGA 4034 Query 301713 TATACTTATTGGAGAAATTGGAGGAACGGTCGGAGATATCGAATCGCTTCCTTTTATAGA 301772 | | ||||| |||||||| ||||| || || ||||| ||||| | ||||||| || Sbjct 4033 TGTTATTATTACCGAAATTGGTGGAACAGTTGGTGATATTGAATCATTAGCTTTTATTGA 3974 Query 301773 AGCGATTCGTCAA 301785 ||| ||| | ||| Sbjct 3973 AGCCATTAGACAA 3961 >seq827 Length=173386 Score = 116 bits (128), Expect = 8e-21 Identities = 162/226 (72%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 301325 TGTTCATCACCGGCGGCGT---TTCAAGTTCATTGGGGAAAGGCCTCGCTGCTGCGAGTA 301381 ||||||||||||||||||| ||| || | || ||||||||||| | || | Sbjct 78404 TGTTCATCACCGGCGGCGTGGTTTCC---TCGCTAGGAAAAGGCCTCGCCTCCGCCGCTC 78460 Query 301382 TCGCCAGTTTACTAGAGAGGCGATGCTTAAAGATAGCGATGCTTAAAATGGACCCCTATA 301441 ||| | | | || || || ||| ||| | ||| || | ||||||||| Sbjct 78461 TCGGCGCTCTTCTGCAGGCTCGCGGCTATAAGGTCCGCCTGCGCAAGCTCGACCCCTATC 78520 Query 301442 TCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAAGTGTTCGTGACGGATG 301501 | |||||||||||||| || ||||||||| ||| || || || || |||||||| |||| Sbjct 78521 TGAACGTCGATCCGGGCACCATGAGCCCGTATCAGCACGGCGAGGTCTTCGTGACCGATG 78580 Query 301502 ATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTCAC 301547 | || || || || || ||||||||||| |||||||| || ||||| Sbjct 78581 ACGGCGCCGAGACGGACCTGGATCTGGGCCACTACGAGCGGTTCAC 78626 >seq739 Length=4453 Score = 95.1 bits (104), Expect = 3e-14 Identities = 239/357 (67%), Gaps = 6/357 (2%) Strand=Plus/Plus Query 301432 GACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAAGTGTTC 301491 ||||| ||| ||||| | ||||| || || |||||||| |||| || || ||||| || Sbjct 2702 GACCCATATCTCAACATTGATCCTGGAACAATGAGCCCAGCTCAGCACGGGGAAGTATTT 2761 Query 301492 GTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTCACT-TC 301550 || || || |||||||||||| | ||| | || || || || ||||| ||||| ||| Sbjct 2762 GTTACTGAGGATGGTGCTGAAGCTGATTTAGACCTTGGACATTACGAGCGTTTTACTAAA 2821 Query 301551 ATTAACCCTTAAGCGTGAAAG-TAATTTTACGACTGGCCAAGTTTATTTAAAAGTTATCG 301609 ||||| | || | | | | ||| | || ||||| |||| || | | || |||| Sbjct 2822 ATTAAAGC--AACCAAGGACGACAATATAACAACTGGTAAAGTATA-TAATAAATTATTA 2878 Query 301610 AA-AATGAACGCGAAGGTAGCTATCTCGGAAAGACGGTGCAAGTTGTTCCCCACATCACC 301668 || || ||| | ||| ||||| || || || |||||| | |||| || | || Sbjct 2879 AAGAAGGAAAGGTGTGGTGATTATCTAGGCAAAACTGTGCAAATCATTCCTCATGTGACA 2938 Query 301669 GATGAAATCAAAAGAAGAATTCACATTGCGGCTGAAAAATCAGATATACTTATTGGAGAA 301728 ||| ||||||| ||| | || | ||| | | |||| | | || | ||| Sbjct 2939 GATTTAATCAAATCTTTCATTTTTAATGGTACAGAAGATTTAGATTTTGTAATATGCGAA 2998 Query 301729 ATTGGAGGAACGGTCGGAGATATCGAATCGCTTCCTTTTATAGAAGCGATTCGTCAA 301785 || || ||||| || || ||||| ||| | || ||| | ||||| || || ||| Sbjct 2999 ATAGGCGGAACCGTAGGTGATATTGAAAGCCAACCGTTTTTGGAAGCTATACGCCAA 3055 >seq1095 Length=1089284 Score = 84.2 bits (92), Expect = 5e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 301432 GACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAAGTGTTC 301491 || |||||| ||||| ||||||| || |||||| || ||| || || || |||||| Sbjct 33210 GATCCCTATCTCAACCTCGATCCCGGCACGATGTCGCCTTATCAGCACGGCGAGGTGTTC 33269 Query 301492 GTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTCAC 301547 || || || || || || |||||||| || || || ||||||||||| || || || Sbjct 33270 GTCACCGACGACGGCGCCGAAACCGACCTCGACCTCGGGCACTACGAGCGGTTTAC 33325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046719096392346