Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09]
1,499 sequences; 18,613,147 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq738 122 2e-22
seq827 116 8e-21
seq739 95.1 3e-14
seq1095 84.2 5e-11
>seq738
Length=4497
Score = 122 bits (134), Expect = 2e-22
Identities = 254/373 (68%), Gaps = 8/373 (2%)
Strand=Plus/Minus
Query 301420 ATGCTTAAAATGGACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACAT 301479
|||| ||| | ||||| ||||| || || ||||| || || ||||| || |||||||
Sbjct 4332 ATGCAAAAATTTGACCCTTATATTAATGTTGATCCAGGTACTATGAGTCCTTATCAACAT 4273
Query 301480 GGAGAAGTGTTCGTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAA 301539
|| ||||| | || || ||||||||||||||| ||| | ||| | || || || |||
Sbjct 4272 GGTGAAGTATATGTAACTAGTGATGGTGCTGAAACTGATTTAGATTTAGGTCATTATGAA 4213
Query 301540 CGTTTCACTTCAT-TAACCCTTAAGCGTGAAAGTAATTTTACGACTGGCCAAGTTTATTT 301598
||||| | || || || || | | || ||| |||| | || |||| ||
Sbjct 4212 CGTTTTA-TTGATGAAAATCTGACTAGAGACTCCAATATTACTGCCGGAAAAGTATACCA 4154
Query 301599 AAAAGTTATCGAAAATGAACGCGAAGGTAGCTATCTCGGAAAGACGGTGCAAGTTGTTCC 301658
|| ||| | |||| |||||||| ||| ||| || || || || |||||||| ||
Sbjct 4153 AACTGTTTTAAAAAAGGAACGCGATGGTTTTTATGAAGGGAAAACTGTACAAGTTGTACC 4094
Query 301659 CCACATCACCGATGAAATCAAAAGA-AGAATTCACATTGCG-GCTGAA----AAATCAGA 301712
|| | || |||||||| |||| | | | || ||| || | || || | ||
Sbjct 4093 ACATGTTACTGATGAAATTAAAAAACATATTTTTAATTCCGCAATTAATAGTAAGGCTGA 4034
Query 301713 TATACTTATTGGAGAAATTGGAGGAACGGTCGGAGATATCGAATCGCTTCCTTTTATAGA 301772
| | ||||| |||||||| ||||| || || ||||| ||||| | ||||||| ||
Sbjct 4033 TGTTATTATTACCGAAATTGGTGGAACAGTTGGTGATATTGAATCATTAGCTTTTATTGA 3974
Query 301773 AGCGATTCGTCAA 301785
||| ||| | |||
Sbjct 3973 AGCCATTAGACAA 3961
>seq827
Length=173386
Score = 116 bits (128), Expect = 8e-21
Identities = 162/226 (72%), Gaps = 6/226 (3%)
Strand=Plus/Plus
Query 301325 TGTTCATCACCGGCGGCGT---TTCAAGTTCATTGGGGAAAGGCCTCGCTGCTGCGAGTA 301381
||||||||||||||||||| ||| || | || ||||||||||| | || |
Sbjct 78404 TGTTCATCACCGGCGGCGTGGTTTCC---TCGCTAGGAAAAGGCCTCGCCTCCGCCGCTC 78460
Query 301382 TCGCCAGTTTACTAGAGAGGCGATGCTTAAAGATAGCGATGCTTAAAATGGACCCCTATA 301441
||| | | | || || || ||| ||| | ||| || | |||||||||
Sbjct 78461 TCGGCGCTCTTCTGCAGGCTCGCGGCTATAAGGTCCGCCTGCGCAAGCTCGACCCCTATC 78520
Query 301442 TCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAAGTGTTCGTGACGGATG 301501
| |||||||||||||| || ||||||||| ||| || || || || |||||||| ||||
Sbjct 78521 TGAACGTCGATCCGGGCACCATGAGCCCGTATCAGCACGGCGAGGTCTTCGTGACCGATG 78580
Query 301502 ATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTCAC 301547
| || || || || || ||||||||||| |||||||| || |||||
Sbjct 78581 ACGGCGCCGAGACGGACCTGGATCTGGGCCACTACGAGCGGTTCAC 78626
>seq739
Length=4453
Score = 95.1 bits (104), Expect = 3e-14
Identities = 239/357 (67%), Gaps = 6/357 (2%)
Strand=Plus/Plus
Query 301432 GACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAAGTGTTC 301491
||||| ||| ||||| | ||||| || || |||||||| |||| || || ||||| ||
Sbjct 2702 GACCCATATCTCAACATTGATCCTGGAACAATGAGCCCAGCTCAGCACGGGGAAGTATTT 2761
Query 301492 GTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTCACT-TC 301550
|| || || |||||||||||| | ||| | || || || || ||||| ||||| |||
Sbjct 2762 GTTACTGAGGATGGTGCTGAAGCTGATTTAGACCTTGGACATTACGAGCGTTTTACTAAA 2821
Query 301551 ATTAACCCTTAAGCGTGAAAG-TAATTTTACGACTGGCCAAGTTTATTTAAAAGTTATCG 301609
||||| | || | | | | ||| | || ||||| |||| || | | || ||||
Sbjct 2822 ATTAAAGC--AACCAAGGACGACAATATAACAACTGGTAAAGTATA-TAATAAATTATTA 2878
Query 301610 AA-AATGAACGCGAAGGTAGCTATCTCGGAAAGACGGTGCAAGTTGTTCCCCACATCACC 301668
|| || ||| | ||| ||||| || || || |||||| | |||| || | ||
Sbjct 2879 AAGAAGGAAAGGTGTGGTGATTATCTAGGCAAAACTGTGCAAATCATTCCTCATGTGACA 2938
Query 301669 GATGAAATCAAAAGAAGAATTCACATTGCGGCTGAAAAATCAGATATACTTATTGGAGAA 301728
||| ||||||| ||| | || | ||| | | |||| | | || | |||
Sbjct 2939 GATTTAATCAAATCTTTCATTTTTAATGGTACAGAAGATTTAGATTTTGTAATATGCGAA 2998
Query 301729 ATTGGAGGAACGGTCGGAGATATCGAATCGCTTCCTTTTATAGAAGCGATTCGTCAA 301785
|| || ||||| || || ||||| ||| | || ||| | ||||| || || |||
Sbjct 2999 ATAGGCGGAACCGTAGGTGATATTGAAAGCCAACCGTTTTTGGAAGCTATACGCCAA 3055
>seq1095
Length=1089284
Score = 84.2 bits (92), Expect = 5e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 301432 GACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAAGTGTTC 301491
|| |||||| ||||| ||||||| || |||||| || ||| || || || ||||||
Sbjct 33210 GATCCCTATCTCAACCTCGATCCCGGCACGATGTCGCCTTATCAGCACGGCGAGGTGTTC 33269
Query 301492 GTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTCAC 301547
|| || || || || || |||||||| || || || ||||||||||| || || ||
Sbjct 33270 GTCACCGACGACGGCGCCGAAACCGACCTCGACCTCGGGCACTACGAGCGGTTTAC 33325
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046719096392346
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |