Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq149 125 7e-24 >seq149 Length=636072 Score = 125 bits (138), Expect = 7e-24 Identities = 141/187 (75%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTG--TACATTTCTGAGTGTATGTTCTCTATGGCTATCT 16529 ||||| ||||||||||| || || |||||||| ||||| | || || || || |||| Sbjct 239132 ATATATGTATCAATCAG--AAGTGAATACATTTCCGAGTGAACATTTTCCATAGCAATCT 239075 Query 16530 GAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCA 16589 | || ||||||||||||| ||||| | | || |||||| | | || ||||| | | Sbjct 239074 GGAAACCATAGAAGCATCTCGCCTCAGTCACCTGAACTTCCTGGGAGAAGCGTTCTACGA 239015 Query 16590 GGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAAT 16649 | |||||||| || ||||| || ||| |||||||||||||||| |||||||| || | Sbjct 239014 GATTCTCATTTACTATACCATCTGATGCCGCAAAAAACGCCAATACATGCTTAATAAAGT 238955 Query 16650 ATTTTTC 16656 | |||| Sbjct 238954 GTCTTTC 238948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511379911491400