Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq23 89.7 4e-13 >seq23 Length=1085908 Score = 89.7 bits (98), Expect = 4e-13 Identities = 173/252 (69%), Gaps = 5/252 (2%) Strand=Plus/Plus Query 102086 TCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCA 102145 || ||||| ||||| || | || || | ||||| | ||| | ||| || ||||||||| Sbjct 507228 TCACCTTCTTCTCTATCTTTGAACCCCAAATTATCAAGAAAAGCTCTGGAACCATTCGCA 507287 Query 102146 TCCCAAATGTGCACGCCAGCTGCT-GATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAA 102204 ||||| || ||||| || |||| | ||| | ||| || ||||| || || || | Sbjct 507288 TCCCATATATGCACACC-TTTGCTAGCTAGTTTTTTACTATCAGTCGAACCGGATATCAT 507346 Query 102205 CCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGT---TAAAAGTGG 102261 |||||| |||||||| | ||| ||||| ||| |||| || || || |||| | | Sbjct 507347 CCACAAAAGTTCTTCTATAACTCCTCTGACAAAAACTCGTTTTGTTGTAAGTAAAGGCAG 507406 Query 102262 AAATTCATTTTCTAAACTAAACCTAGACTGTGTTCCAAAAATACTCAGTGTTCCAGTCCC 102321 | | ||||| |||| | |||| || |||||| | | | |||||| || Sbjct 507407 AGTATTATTTTTTAAAGAATACCTTTGTACTGATCCAAATACAGATAAGGTTCCAACACC 507466 Query 102322 TGTTCTGTCATT 102333 |||||||||||| Sbjct 507467 TGTTCTGTCATT 507478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361227447169145