Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq219 479 3e-130 seq149 134 2e-26 >seq219 Length=603346 Score = 479 bits (530), Expect = 3e-130 Identities = 1018/1500 (68%), Gaps = 30/1500 (2%) Strand=Plus/Plus Query 52782 GTGGTTTTAT-TTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTA 52840 ||| ||||| |||| ||| || | |||||||| || | | || || ||||| || Sbjct 377118 GTGATTTTAACTTTAGACTTATCTACGGTGAATTGTATAGCATTGGCAGCTGGTTTTGTT 377177 Query 52841 CGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTT 52900 |||| ||||||||| || ||||| ||||| | ||||| ||||||| || || |||| Sbjct 377178 CGTAAATAGTACATGCCAGTTTTCAGACCCATTTTCCATGCGTAAAAGTGTATGGATGTT 377237 Query 52901 AGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAG 52960 | ||| |||| | || ||||| | ||| || || | || |||||||| || || ||| Sbjct 377238 AATTTTCCATAATTTGGTTCTGCGACATGTATGTTAAATGACTGACTTTGGTCTATAAAG 377297 Query 52961 GCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTA 53020 ||||| ||||| |||||||||| || | ||||| | ||| ||||| | |||||| Sbjct 377298 GCTCCTCTGTCCGCAGCCATTTGAATTGTTGTCTTGACGGAAATCTCCCATACTGTTTTA 377357 Query 53021 TAAAC-TCGCTTAATATCTTCTGGAAG-GTTTGTAT--TCTGAATAGATCCACCATCTAC 53076 || | || || | | |||| || | | || || ||||||| || ||| | Sbjct 377358 TACAGATCTCTGA-TGTCTTTGGGTATTGCTTCAATGTTCTGAATGGAACCATTGTTATG 377416 Query 53077 CATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCG-GTTAAAACTCTAAGGA 53135 ||||| |||||| || || |||| ||||| | | || | || ||| || | | | Sbjct 377417 TATAATGAGATTCTTCATTTCTTCATCCCATAGATC-CGCTTGAGTCAAATCTGTTAAAA 377475 Query 53136 GATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGG 53195 |||| | || || |||||||| ||||||||||| |||| | |||||| || | Sbjct 377476 GATGATGGTTGACCACTTGAAACTCTCCAGACAAAACTCGTCTTTGGTAAATGTTTGATG 377535 Query 53196 TATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAG 53255 || | ||||| | || ||||||||||| | |||||||| || || ||||| ||||| | Sbjct 377536 TAAAAGGTTCAAACGATTCATTATTTCCTAGTATTTGAGCGGTGGAGGCAGTGGGCATTG 377595 Query 53256 GTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTC 53313 | || | | | ||| | |||||| ||| | || ||||| ||||| |||| | Sbjct 377596 GCGCTAATAGAAGGGAATTACGAAGACC--ATGCTTTGCAATTTTTTCTTTAAGAGCAGC 377653 Query 53314 CCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACT 53373 ||||| ||||||||| | ||| |||||||| || | || Sbjct 377654 CCAATCCCAAAGATCTGTGGGTGTTTTGTTCCACATATCGTACTGTAGAATCCCTTGGCT 377713 Query 53374 GGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCG 53432 || | || ||| | || || ||| || || |||| |||| |||||||| | Sbjct 377714 AGCAGGACTTCCCT-CGTAAGTGCTGTAAACACCATCTCTCTCGGCTAACTCACAACTTG 377772 Query 53433 CCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAG--ATCTTGTGCTTC 53490 |||| | ||||||||||| || ||||| || || | || ||| || || ||| |||| Sbjct 377773 CCTCGAGCGCACCGTAATAGATCGTTTCAAATATTTGCTGATTAAGTAATATTGC-CTTC 377831 Query 53491 -CAGGCTATCAAATGGATAATTTAAGA-GAATAAACGCGTCTGCTAATCCTTGAACACCA 53548 || || ||| | || |||| | | | ||| ||| || || |||||||| ||||| || Sbjct 377832 TCA--CTCTCATACGG-TAATCTCATAAGAACAAATGCATCCGCTAATCCCTGAACGCCG 377888 Query 53549 ATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTA 53608 ||||| || || || ||| || |||| ||| ||| || || || | ||||||| | || Sbjct 377889 ATACCAATGGGCCTGTGTTTCATATTCGAGTTTTTCGCCTCCGGTACAGGATAAAAGTTG 377948 Query 53609 ATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACC-ACATCCTTCAGTTTGAG 53667 | ||| |||||||| || || ||| || | | ||| | || || |||||||| Sbjct 377949 ACATCAATAATTTTGTTCAGATTT-TGTGTAACAGTTTTAGTTACTTCTTTCAGTTTTTT 378007 Query 53668 AAAATCAAATTGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAAC 53727 ||||| |||| | | | |||||||| || | || || || || ||||| || || Sbjct 378008 GAAATCGAATTTTTTGTTTTCAACAAACATATTTAGAGCTATTGAGGCGAGATTGCACAC 378067 Query 53728 GGCTACCTCATTAGCATCCGC---ATATTGTATTATCTCAGTGCAAAGATTACTACACTT 53784 ||| ||||||| | |||| ||||| | || ||||| || | |||||| || || Sbjct 378068 GGCAACCTCAT---CTTCCGATGTATATTCAACAATTTCAGTACACAAATTACTGCATTT 378124 Query 53785 GATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 53844 ||| ||||| | ||||| ||||||||| ||| ||||||| ||||| || || || ||| | Sbjct 378125 GATAGTTCCAAGATTTTTTTGATTACTTTTTCTGTTACATGCATCTTTGTACAGCATGTA 378184 Query 53845 TGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTAT 53904 ||| ||||||||||| | || | ||| ||||| |||||||| | | |||| || Sbjct 378185 TGGAGTACCAGTTTCGACTTGCGCTTCAATAATGGCTTTCCATAATATCTGAGCGCGTAC 378244 Query 53905 TATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCC 53964 | |||| |||||| ||| ||| |||||| |||||| || || || Sbjct 378245 TTGCCTGACAAATCTGTTTTCTTGTTCATATTTCTCATACAACGCTTCAAATTCTTCACC 378304 Query 53965 CCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC 54024 || || | | || ||||| | || |||||||||| ||| | | | | Sbjct 378305 GTAACAATCATAAAGCCCTGGACAGTTATGGGGACACATCAGACTCCAATTTTCATTTCT 378364 Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || || | ||||| || | ||| || ||||| ||||| ||| | ||||||| || Sbjct 378365 CTCAACCCTCTTCATGAACAAATCTGGTATCCATAGAGCATAAAACAATTCTCTGGCCCT 378424 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 ||| || |||||||| ||||| || | ||| | ||| | | |||||||||||||| Sbjct 378425 CACTTCTTCCTTTCCTGTGTTCTTCTTTAAATCCAAAAACTCGAAGATATCAGAATGCCA 378484 Query 54145 CGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCT 54204 ||| |||| || |||| | |||| || ||||| || || || ||||| | ||||| Sbjct 378485 CGGCTCCACATAGATGGCGAATGCTCCCGGACGTTTATTGCCCCCTTGATCAACATATCT 378544 Query 54205 AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCC 54264 || ||||||||||| || |||||||| |||| | ||||| || |||||| || || Sbjct 378545 TGCTGTGTTATTATACACCCTCAACATCGGAACGAGTCCATTTGAAATACCATTTGTACC 378604 >seq149 Length=636072 Score = 134 bits (148), Expect = 2e-26 Identities = 142/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 24400 TAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTT 24459 ||| |||||||||||||| ||| |||||||||||| |||| ||||| || || || | Sbjct 239134 TAATATATGTATCAATCAGAAGTGAATACATTTCCGAGTGAACATTTTCCATAGCAATCT 239075 Query 24460 GAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTA 24519 | || || ||||| ||||| ||||| || | ||| ||||| | || |||||| | | Sbjct 239074 GGAAACCATAGAAGCATCTCGCCTCAGTCACCTGAACTTCCTGGGAGAAGCGTTCTACGA 239015 Query 24520 AATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 24579 ||| ||||| ||||| || || || |||||||||||||||||||| || ||||| | Sbjct 239014 GATTCTCATTTACTATACCATCTGATGCCGCAAAAAACGCCAATACATGCTTAATAAAGT 238955 Query 24580 ATTTTTC 24586 | |||| Sbjct 238954 GTCTTTC 238948 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680 ||||||| || |||||||| || ||||| || || ||||||||||| || ||||| | | Sbjct 238709 TTAGATAAGTCAACTTCTTCAACAGTCCAGAAAGAAGCCTCTGCCTTCTTGTACATTTGC 238650 Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAATC 24717 || || ||| |||| || || || || |||||||||| Sbjct 238649 CATATATCAGGATACTGGATGGGGAATATAACAAATC 238613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593681560899600