Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq445 224 8e-54 seq131 96.9 3e-15 >seq445 Length=79264 Score = 224 bits (248), Expect = 8e-54 Identities = 403/583 (69%), Gaps = 7/583 (1%) Strand=Plus/Plus Query 105997 gggTTAGCCCCTTTGCCGCCCGGAAACTCCCAATCGATGTCTACACCGTCAAAGAATTTC 106056 |||||||| ||||| || || || |||||||| || || || |||||||||||||||||| Sbjct 27226 GGGTTAGCACCTTTACCACCAGGGAACTCCCAGTCAATATCAACACCGTCAAAGAATTTC 27285 Query 106057 CACACTTGCAGAAATTCCTTAACCGAATCTACAAAAACGTTTCTTTTTTCAACATC-GTG 106115 || | || || || ||||| || |||||||| | || || ||| ||| Sbjct 27286 CAGGTTAAAAGGAAATCTTTAACAGATTCTACAAATCGCTGTCGCTTACTCTTATCAGTG 27345 Query 106116 CATAAAATAAAATGGGTCTGATAGAGTCCAGCCTCCTATTGAAGGAAGAATTTTTAAATG 106175 | || | ||| || || | || |||||| || || ||||| || | ||| || || | Sbjct 27346 AAGAAGAAGAAA-GGATCAGCTAAAGTCCACCCACCAATTGATGGTAAAATCTTCAAGTC 27404 Query 106176 GGGGTTTGCTAATTTTGCCGCCATCAACTGTCCAAAATTGCCTTTATACGGCTCGTTCCA 106235 || || ||| ||| | |||||| || ||||||||||||||||| || || ||||| Sbjct 27405 TGGTTTAGCTTGTTTCAATGACATCAATTGACCAAAATTGCCTTTATAAGGTTCATTCCA 27464 Query 106236 AGCGGACACACCTTTTTGGGGTTTTTGTACGGCGGCCCACGGATCGTGAATGGCAACTTT 106295 | ||| | |||| |||| ||||| |||| || ||||| ||||| || |||| ||| || Sbjct 27465 GGAGGATAGACCTCTTTGAGGTTTCTGTAAAGCAGCCCAAGGATCATGGATGGAAACCTT 27524 Query 106296 GAAATCTTCGCGTCCCTTGCACGATCTTTGCAAAGATTCAAAGCTTCCGGGTATCGTTTT 106355 |||||||| || || |||| || | || | | || ||| ||||| || ||| Sbjct 27525 AAAATCTTCCCGACCACTGCATGAACGCTGTAGTGCTTGAAAACTTCCCTCGATTTCTTT 27584 Query 106356 GAGGGCGTCGTTTATTCCATCGCCGCCGCAGATGGGTATGAAACCATACAACAAG-TGTG 106414 | ||| || || ||||| || || || || ||||||||||| || || ||| |||| Sbjct 27585 TAAACTGTCATTAATGCCATCACCCCCACATATCGGTATGAAACCGTA-AAGAAGATGTG 27643 Query 106415 ATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAGTTGCGCCCGTACACACCCCACTCAA 106474 | |||||| | || || || ||||| || || | ||| |||||||| |||| Sbjct 27644 TGAGATTTGGAATCGGCACACGATCGACGGGGAATTTCCTGGGGTATACACCCCATTCAA 27703 Query 106475 CAAAGTACGCAGCGACAATTTTATC---CTCTCTCCTGCCAGGTTTGTTGTTTTCCAGCC 106531 | ||||| || | || | |||| | | | || |||||||| ||||| | Sbjct 27704 CGAAGTAAGCTCCAACGACTTTACCAGACGTTTGTTTGAATGGTTTGTTCTTTTCTCCCA 27763 Query 106532 ATGTGTATTCGAGCGGTGCCAGATGGCCGCCGTCGGTGTCTGC 106574 || ||||| | ||||| ||||| | ||||||||||| || Sbjct 27764 TTGAATATTCTAACGGTGGAAGATGACTTCCGTCGGTGTCAGC 27806 >seq131 Length=856804 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | |||||||| || || ||||| || || ||| |||||| | Sbjct 308339 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308280 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || |||| || || || || ||||| | ||| ||| || Sbjct 308279 GACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 308220 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || |||||||||||||| ||||| || | |||||| || || | |||||||| Sbjct 308219 CAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAAC 308160 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 ||||| |||||||| || || ||| |||| || |||| |||||||| Sbjct 308159 ATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGGG 308112 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | |||||||| || || ||||| || || ||| |||||| | Sbjct 308567 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308508 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || |||| || || || || ||||| | ||| ||| || Sbjct 308507 GACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 308448 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || |||||||||||||| ||||| || | |||||| || || | |||||||| Sbjct 308447 CAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAAC 308388 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 ||||| |||||||| || || ||| |||| || |||| |||||||| Sbjct 308387 ATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGGG 308340 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | |||||||| || || ||||| || || ||| |||||| | Sbjct 308795 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308736 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || |||| || || || || ||||| | ||| ||| || Sbjct 308735 GACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 308676 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || |||||||||||||| ||||| || | |||||| || || | |||||||| Sbjct 308675 CAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAAC 308616 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 ||||| |||||||| || || ||| |||| || |||| |||||||| Sbjct 308615 ATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGGG 308568 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 || ||||| || || | ||||| || || |||||||| || || ||| |||||| Sbjct 309026 AAGATGCAGATTTTTGTGAAAACCTTAACTGGCAAAACGATCACTTTGGAAGTTGAACCC 308967 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || ||| | | || |||| ||||| || || ||||| | ||| ||| Sbjct 308966 TCCGACACGATCGAGAATGTTAAAGCTAAAATCCAGGACAAGGAAGGAATTCCCCCAGAC 308907 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || || |||||||||||||| ||||| || | |||||| || || | |||||| Sbjct 308906 CAGCAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTAC 308847 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 || ||||| |||||||| || || ||| |||| || |||| |||||||| Sbjct 308846 AACATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGGG 308796 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | |||||||| || || ||||| || || ||| |||||| | Sbjct 308111 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308052 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || |||| || || || || ||||| | ||| ||| || Sbjct 308051 GACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 307992 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || |||||||||||||| ||||| || | |||||| || || | ||||| || Sbjct 307991 CAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTATAAC 307932 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| |||||||| || || ||| | || || |||| ||||| || Sbjct 307931 ATTCAAAAGGAATCAACCCTGCACTTAGTACTAAGATTGCGAGGGGG 307885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428307836238725