Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq445 232 5e-56 seq131 102 7e-17 >seq445 Length=79264 Score = 232 bits (256), Expect = 5e-56 Identities = 410/592 (69%), Gaps = 17/592 (3%) Strand=Plus/Plus Query 97764 GGGTTAGCCCCTTTGCCGCCCGGAAATTCCCAATCGACGTCGACACCATCAAAAAATTTC 97823 |||||||| ||||| || || || || ||||| || | || ||||| ||||| |||||| Sbjct 27226 GGGTTAGCACCTTTACCACCAGGGAACTCCCAGTCAATATCAACACCGTCAAAGAATTTC 27285 Query 97824 CACACTTGCAAAAATTCCTTAACCGACTCTACAAAAA-----CGTTT-CTTTTTTCAACG 97877 || | | || || ||||| || |||||||| || || || || ||| Sbjct 27286 CAGGTTAAAAGGAAATCTTTAACAGATTCTACAAATCGCTGTCGCTTACTCTTATCA--- 27342 Query 97878 TCGTGCATGAAATAGAACGGGTCCGACAGAGTCCAGCCTCCTATTGAAGGAAGAATTTTT 97937 ||| | ||| |||| || || | | |||||| || || ||||| || | ||| || Sbjct 27343 --GTGAA-GAAGAAGAAAGGATCAGCTAAAGTCCACCCACCAATTGATGGTAAAATCTTC 27399 Query 97938 AGATGTGGGTTTGCTAATTTCGCCGCCATCAATTGTCCAAAATTGCCTTTGTACGGTTCG 97997 | | ||| || ||| |||| | ||||||||| |||||||||||||| || ||||| Sbjct 27400 AAGTCTGGTTTAGCTTGTTTCAATGACATCAATTGACCAAAATTGCCTTTATAAGGTTCA 27459 Query 97998 TTCCAAGCGGACACGCCCTTTTGGGGTTTTTGTACGGCGGCCCACGGATCGTGGATGGCA 98057 ||||| | ||| | || |||| ||||| |||| || ||||| ||||| ||||||| | Sbjct 27460 TTCCAGGAGGATAGACCTCTTTGAGGTTTCTGTAAAGCAGCCCAAGGATCATGGATGGAA 27519 Query 98058 ACTTTGAAATCTTCGCGTCCCCTGCACGATCGTTGCAGAGCTTCAAAACTTCCGGGTATT 98117 || || |||||||| || || ||||| || || || || |||| ||||||||| ||| Sbjct 27520 ACCTTAAAATCTTCCCGACCACTGCATGAACGCTGTAGTGCTTGAAAACTTCCCTCGATT 27579 Query 98118 GTTTTGAGGGCGTCGTTTATTCCATCGCCACCGCAGATGGGTATGAAACCGTACAACAAG 98177 ||| | ||| || || ||||| || || || || |||||||||||||| || ||| Sbjct 27580 TCTTTTAAACTGTCATTAATGCCATCACCCCCACATATCGGTATGAAACCGTA-AAGAAG 27638 Query 98178 -TGCGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAGCTGCGCCCGTACACACCCCA 98236 || | | |||||| | || || || ||||| || | | ||| |||||||| Sbjct 27639 ATGTGTGAGATTTGGAATCGGCACACGATCGACGGGGAATTTCCTGGGGTATACACCCCA 27698 Query 98237 CTCGACAAAGTACGCAGCGACAATTTTATC---CTCTCTTCTGCCGGGTTTGTTGTTTTC 98293 || || ||||| || | || | |||| | | | | || |||||||| ||||| Sbjct 27699 TTCAACGAAGTAAGCTCCAACGACTTTACCAGACGTTTGTTTGAATGGTTTGTTCTTTTC 27758 Query 98294 CAGCCATGTGTATTCGAGCGGCGCCAGATGACCGCCGTCGGTGTCTGCGATT 98345 | || ||||| | ||| | ||||||| ||||||||||| || ||| Sbjct 27759 TCCCATTGAATATTCTAACGGTGGAAGATGACTTCCGTCGGTGTCAGCAATT 27810 >seq131 Length=856804 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 || ||||| || || | ||||| || || |||||||| || || ||| |||||| Sbjct 309026 AAGATGCAGATTTTTGTGAAAACCTTAACTGGCAAAACGATCACTTTGGAAGTTGAACCC 308967 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || ||| | | || | || ||||| || || ||||| | ||| ||| Sbjct 308966 TCCGACACGATCGAGAATGTTAAAGCTAAAATCCAGGACAAGGAAGGAATTCCCCCAGAC 308907 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || || |||||||||||||| ||||| || || |||||| || || | |||||| Sbjct 308906 CAGCAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTAC 308847 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 || |||||||||||||| || || ||| |||| || |||| |||||||| Sbjct 308846 AACATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGGG 308796 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | |||||||| || || ||||| || || ||| |||||| | Sbjct 308339 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308280 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | || | || || || || || ||||| | ||| ||| || Sbjct 308279 GACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 308220 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || |||||||||||||| ||||| || || |||||| || || | |||||||| Sbjct 308219 CAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAAC 308160 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 |||||||||||||| || || ||| |||| || |||| |||||||| Sbjct 308159 ATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGGG 308112 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | |||||||| || || ||||| || || ||| |||||| | Sbjct 308567 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308508 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | || | || || || || || ||||| | ||| ||| || Sbjct 308507 GACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 308448 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || |||||||||||||| ||||| || || |||||| || || | |||||||| Sbjct 308447 CAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAAC 308388 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 |||||||||||||| || || ||| |||| || |||| |||||||| Sbjct 308387 ATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGGG 308340 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | |||||||| || || ||||| || || ||| |||||| | Sbjct 308795 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308736 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | || | || || || || || ||||| | ||| ||| || Sbjct 308735 GACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 308676 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || |||||||||||||| ||||| || || |||||| || || | |||||||| Sbjct 308675 CAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAAC 308616 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 |||||||||||||| || || ||| |||| || |||| |||||||| Sbjct 308615 ATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGGG 308568 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | |||||||| || || ||||| || || ||| |||||| | Sbjct 308111 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308052 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | || | || || || || || ||||| | ||| ||| || Sbjct 308051 GACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 307992 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || |||||||||||||| ||||| || || |||||| || || | ||||| || Sbjct 307991 CAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTATAAC 307932 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||||||| || || ||| | || || |||| ||||| || Sbjct 307931 ATTCAAAAGGAATCAACCCTGCACTTAGTACTAAGATTGCGAGGGGG 307885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410769789468530