Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq221 134 1e-26 seq149 116 4e-21 seq148 100 3e-16 >seq221 Length=486136 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||||||||||||| | || |||||| || || Sbjct 78570 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCCTAGAAGTCGAACCCTCC 78511 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| |||||| | ||||| || |||||||| | ||||| Sbjct 78510 GACACCATAGAGAATGTAAAGGCAAAAATCCAAGACAAGGAAGGCATCCCTCCAGACCAA 78451 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || || |||||||| |||| || || || ||||||||| Sbjct 78450 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGACGGCCGTACACTTTCTGACTACAAC 78391 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| | || ||||| |||| | || | || ||||| Sbjct 78390 ATCCAGAAGGAGTCTACCTTGCATTTAGTTCTCCGTCTCAGAGGCGG 78344 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || ||||||||||| || || || ||||| || | || |||||| | Sbjct 79485 AAAATGCAGATTTTTGTAAAAACGCTTACTGGAAAGACCATAACTTTGGAAGTCGAACCT 79426 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | ||| | || | ||||||| ||||||||||| ||||| | || Sbjct 79425 TCGGATACTATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAGGGAATCCCACCAGAT 79366 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||||||| | |||| || || ||||| |||| |||| || || || ||| ||| Sbjct 79365 CAGCAACGATTGATCTTTGCAGGAAAACAATTGGAGGACGGACGTACTCTTTCCGATTAC 79306 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| || || ||| | || || ||||| || ||||| Sbjct 79305 AACATTCAAAAAGAGTCTACTCTTCATCTTGTTTTGCG 79268 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||||||||||||| | || |||||| | | Sbjct 78798 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCCTAGAAGTCGAACCTTCA 78739 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | || | ||||| | |||||||| || ||||| | ||||| Sbjct 78738 GACACAATTGAGAATGTAAAAGCGAAAATCCAAGACAAAGAAGGTATCCCTCCCGACCAA 78679 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || || |||||||| |||| || || || ||||||||| Sbjct 78678 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGACGGCCGTACACTTTCTGACTACAAC 78619 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| | || || ||||| || | || ||| | || || Sbjct 78618 ATCCAGAAGGAATCGACACTCCATCTCGTACTACGATTGCGTGGTGG 78572 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||||||||||||| | || |||||| | | Sbjct 79026 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCTTAGAAGTCGAACCTTCA 78967 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | || | ||||| | |||||||| || ||||| | ||||| Sbjct 78966 GACACAATTGAGAATGTAAAAGCGAAAATCCAAGACAAAGAAGGTATCCCTCCCGACCAA 78907 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || || |||||||| |||| || || || ||||||||| Sbjct 78906 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGACGGCCGTACACTTTCTGACTACAAC 78847 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| | || || ||||| || | || ||| | || || Sbjct 78846 ATCCAGAAGGAATCGACACTCCATCTCGTACTACGATTGCGTGGTGG 78800 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || ||||| ||||| || || | || || || | | Sbjct 79254 ATGCAGATCTTTGTTAAAACCCTTACGGGTAAAACTATAACGTTAGAGGTAGAGCCTTCT 79195 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||||| | |||| ||||| | ||||| || ||||||||| | || || Sbjct 79194 GATACTATTGAAAACG-TGAAGGCTAAAATCCAAGACAAGGAAGGCATCCCCCCAGATCA 79136 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | || | ||| || ||||| | || || | || || ||| ||||||||| Sbjct 79135 ACAACGTTTGATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCCGACTACAA 79076 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || ||||| || Sbjct 79075 CATCCAGAAGGAATCTACACTCCATCTCGT 79046 >seq149 Length=636072 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 116707 GAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTT 116766 ||| || ||||| | || || ||| || | || || || ||||| || |||| || Sbjct 238920 GAGTGATTGGGAAAGTTTAAAGGACTGTGAAAGACACTTTATTAAGCATGTATTGGCGTT 238979 Query 116767 TTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGT 116826 ||| || || || || || || || |||||||| || || || ||| | ||||| || Sbjct 238980 TTTTGCGGCATCAGATGGTATAGTAAATGAGAATCTCGTAGAACGCTTCTCCCAGGAAGT 239039 Query 116827 GCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTC 116886 |||||| | |||||| | |||||||| || || ||||| || ||||| || || ||||| Sbjct 239040 TCAGGTGACTGAGGCGAGATGCTTCTATGGTTTCCAGATTGCTATGGAAAATGTTCACTC 239099 Query 116887 GGAAATGTATTC 116898 |||||||||||| Sbjct 239100 GGAAATGTATTC 239111 Score = 107 bits (118), Expect = 2e-18 Identities = 158/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| || || || ||||| | || || || || ||||||| || ||||| || | | Sbjct 239240 TGTTCAATGCTATTGAGACTTTACCCTGTGTAAAGAAGAAGGCAGATTGGGCCCTTCAGT 239299 Query 117006 GGATCGCCGGCAGAGA-GGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAG 117064 |||| ||| | | ||| |||| | || || |||||| | || || || || || || || Sbjct 239300 GGATTGCCAGTA-AGACGGCCACATTTGGAGAGCGCATTGTTGCATTTGCTGCTGTTGAA 239358 Query 117065 GGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATG 117124 || | ||||| || || ||||| || | || || ||| | ||||| | || |||||| Sbjct 239359 GGGATTTTCTTCTCTGGTAGTTTTGCTTCTATCTTCTGGATGAAGAAGAGAGGTCTCATG 239418 Query 117125 CCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGA 117165 ||||| |||||||||| || || ||||| || || || || Sbjct 239419 CCCGGTTTGACTTTCAGTAATGAACTCATTTCTAGAGATGA 239459 >seq148 Length=419512 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| |||||||| |||||||||||| |||| |||||| || Sbjct 143864 AAGATGCAGATTTTCGTGAAAACCCTCACGGGGAAAACCATCACCCTCGAGGTCGAACCC 143805 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||| | ||||| | ||||||||||| ||||| ||||| Sbjct 143804 TCGGACACCATCGAGAATGTCAAAGCTAAAATACAAGACAAAGAGGGAATCCCTCCGGAC 143745 Query 40807 CAGCA 40811 ||||| Sbjct 143744 CAGCA 143740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515184454905200