Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq221 129 9e-25 seq64 118 2e-21 seq23 91.5 2e-13 >seq221 Length=486136 Score = 129 bits (142), Expect = 9e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| |||| || || || || || || |||||| | || | ||| | Sbjct 79483 AATGCAGATTTTTGTAAAAACGCTTACTGGAAAGACCATAACTTTGGAAGTCGAACCTTC 79424 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| | ||| ||||||||||| ||||| || || ||||| ||||| Sbjct 79423 GGATACTATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAGGGAATCCCACCAGATCA 79364 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | || ||||||||||||||||| ||||| | || || | ||||| || Sbjct 79363 GCAACGATTGATCTTTGCAGGAAAACAATTGGAGGACGGACGTACTCTTTCCGATTACAA 79304 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || ||| | ||| | ||||| ||| | || || ||||| Sbjct 79303 CATTCAAAAAGAGTCTACTCTTCATCTTGTTTTGCGTCTTCGCGGAGGTAT 79253 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || ||||||||||| ||||| | || | | Sbjct 79254 ATGCAGATCTTTGTTAAAACCCTTACGGGTAAAACTATAACGTTAGAGGTAGAGCCTTCT 79195 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | || ||||| ||||| || ||||| || || || |||||| Sbjct 79194 GATACTATTGAAAACGTGAAGGCTAAAATCCAAGACAAGGAAGGCATCCCCCCAGATCAA 79135 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | ||||| || || ||||||||||| ||| |||| || | || || || Sbjct 79134 CAACGTTTGATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCCGACTACAAC 79075 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| || | ||| | || ||||| | || |||||||| Sbjct 79074 ATCCAGAAGGAATCTACACTCCATCTCGTACTACGTCTGCGTGGTGGTAT 79025 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | || |||||||| || || |||| | ||| | Sbjct 78798 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCCTAGAAGTCGAACCTTCA 78739 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| ||||| |||||| ||||| ||||||||||| || || || ||| Sbjct 78738 GACACAATTGAGAATGTAAAAGCGAAAATCCAAGACAAAGAAGGTATCCCTCCCGACCAA 78679 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| || || || | || || | || ||| | || || || Sbjct 78678 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGACGGCCGTACACTTTCTGACTACAAC 78619 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| || | ||| | || |||| || || |||||||| Sbjct 78618 ATCCAGAAGGAATCGACACTCCATCTCGTACTACGATTGCGTGGTGGTAT 78569 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | || |||||||| || || |||| | ||| | Sbjct 79026 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCTTAGAAGTCGAACCTTCA 78967 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| ||||| |||||| ||||| ||||||||||| || || || ||| Sbjct 78966 GACACAATTGAGAATGTAAAAGCGAAAATCCAAGACAAAGAAGGTATCCCTCCCGACCAA 78907 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| || || || | || || | || ||| | || || || Sbjct 78906 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGACGGCCGTACACTTTCTGACTACAAC 78847 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| || | ||| | || |||| || || |||||||| Sbjct 78846 ATCCAGAAGGAATCGACACTCCATCTCGTACTACGATTGCGTGGTGGTAT 78797 >seq64 Length=1946208 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | ||||| ||||| || ||||| || || ||||| |||| || Sbjct 785928 AATGCAGATTTTCGTTAAGACCCTAACGGGTAAAACCATTACCCTAGAGGTTGAGGCCTC 785869 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || ||| |||| || || ||||| || |||||||| ||||| ||||| Sbjct 785868 TGACACCATCGAGAATGTAAAGGCCAAGATCCAAGACAAGGAAGGTATTCCACCAGATCA 785809 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | | || || || ||||||||||| || ||| |||| || ||| || || || Sbjct 785808 GCAGCGATTGATATTCGCTGGAAAACAATTGGAAGATGGTCGTACCTTATCCGACTACAA 785749 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 ||||||||| ||||| || |||||| | || || Sbjct 785748 TATTCAAAAGGAATCTACCTTGCATCTTGTGTT 785716 >seq23 Length=1085908 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/164 (73%), Gaps = 3/164 (2%) Strand=Plus/Plus Query 205438 AAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGT 205497 ||||| || | |||||||||||||| ||||| || |||||| |||| ||| |||||| Sbjct 506694 AAATTTGTGATATGTGCAATCATATGTGTCAACAATGAATAACTGGCAATATTGAATGGT 506753 Query 205498 ACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTA 205557 || || | ||||||||| || |||||| |||| |||| | || || ||| Sbjct 506754 ACTCCAAGACCCATATCTGCACTTCTTTGGTACAAAAGACAACTCAG---CTTTCCATTG 506810 Query 205558 ATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCAT 205601 ||||| |||||| ||| || ||||||||||| | | |||| Sbjct 506811 GATACATAGAATTGTGCAAGGCAGTGACAAGGTGGGAGAGCCAT 506854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755405053936000