Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq64 102 1e-16 seq221 95.1 2e-14 seq222 84.2 3e-11 >seq64 Length=1946208 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATT-CTTTAGATATATTATAATCTGA 146109 || ||||||||||| || || | ||| || ||||||| |||| || ||||| || || || Sbjct 785701 CCTCCTCTAAGTCTCAACACAAGATGCAAGGTAGATTCCTTTTGA-ATATTGTAGTCGGA 785759 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | || | | ||| || |||||||||||||| || ||||||| |||||||| || || Sbjct 785760 TAAGGTACGACCATCTTCCAATTGTTTTCCAGCGAATATCAATCGCTGCTGATCTGGTGG 785819 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||| || ||||| Sbjct 785820 AATACCTTCCTTGTCTTG 785837 >seq221 Length=486136 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || || | ||| | |||||| ||||| || || ||||| |||||||| | | || Sbjct 79271 AAAACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAAAGAGTACGTCCGTCC 79330 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || ||||||||||| ||||| ||||||| ||||||||| || || ||||| ||||| ||| Sbjct 79331 TCCAATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCCTCTTTGTCT 79390 Query 146186 TG 146187 || Sbjct 79391 TG 79392 >seq222 Length=702318 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/133 (74%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 10481 TAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGT 10540 ||||| |||| |||| |||||| || || || |||||||| |||| ||||| || || Sbjct 155533 TAAATGTATTC-TATTCCAGCTGGTGTTATCGATGAAGATTACCGAGGCAATGTCGGGGT 155591 Query 10541 AATATTATTTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCA 10600 ||||||| || || || ||||| || || | | | || | ||| || ||||| | || Sbjct 155592 CGTATTATTCAACCACTCCAATGAGGACTTCAAAGTCAACAAAGGTGACAGAATTGCCCA 155651 Query 10601 ATTAATATGTGAA 10613 | ||||||||||| Sbjct 155652 ACTAATATGTGAA 155664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743476258438400