Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq221 105 4e-18 seq131 96.9 2e-15 >seq221 Length=486136 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || |||| |||| |||| |||||| || || || Sbjct 78380 TCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAG 78439 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || ||||| ||||| || | || |||||||| || ||| ||||| || Sbjct 78440 ATCAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATTTTTGCCTTTACATTC 78499 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 |||| | |||| | |||||| || | |||||||||||||| || | || || || Sbjct 78500 TCTATGGTGTCGGAGGGTTCGACTTCTAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACG 78559 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 78560 AAGATCTGCAT 78570 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||| || || |||| |||| |||| |||||| || || || Sbjct 78607 TTCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAA 78666 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGC-TTTAGAT 34316 || || ||||| |||||| || | | || ||||| || ||| || |||| || Sbjct 78667 GATCAGACGCTGTTGGTCGGGAGGGATACCTTCTTTGTCTTGGAT-TTTCGCTTTTACAT 78725 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | || | | |||||| || | |||||||||||||| || | || || | Sbjct 78726 TCTCAATTGTGTCTGAAGGTTCGACTTCTAGGGTGATGGTTTTGCCAGTCAAGGTCTTGA 78785 Query 34377 CAAAGATCTGCAT 34389 | ||||||||||| Sbjct 78786 CGAAGATCTGCAT 78798 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||| || || |||| |||| |||| |||||| || || || Sbjct 78835 TTCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAA 78894 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGC-TTTAGAT 34316 || || ||||| |||||| || | | || ||||| || ||| || |||| || Sbjct 78895 GATCAGACGCTGTTGGTCGGGAGGGATACCTTCTTTGTCTTGGAT-TTTCGCTTTTACAT 78953 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | || | | |||||| || | |||||||||||||| || | || || | Sbjct 78954 TCTCAATTGTGTCTGAAGGTTCGACTTCTAAGGTGATGGTTTTGCCAGTCAAGGTCTTGA 79013 Query 34377 CAAAGATCTGCAT 34389 | ||||||||||| Sbjct 79014 CGAAGATCTGCAT 79026 >seq131 Length=856804 Score = 96.9 bits (106), Expect = 2e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 34175 CTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCG 34234 || || |||| ||| | || ||| || || |||||||| || ||||| || | Sbjct 308809 CTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCA 308868 Query 34235 TCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTG 34294 || || ||||||||||| || || || || | ||||||||| ||| | | |||||| Sbjct 308869 TCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTG 308928 Query 34295 TCGGCTATCTTTTGCTTTAG-ATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGAT 34353 || || ||| |||||| || | |||| |||| | ||| || |||| ||||| Sbjct 308929 TCCTGGAT-TTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGAT 308987 Query 34354 GGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||||||| || | ||||||||||| ||||||||| Sbjct 308988 CGTTTTGCCAGTTAAGGTTTTCACAAAAATCTGCATC 309024 Score = 89.7 bits (98), Expect = 3e-13 Identities = 154/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 34175 CTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCG 34234 || || |||| ||| | || ||| || || |||||||| || ||||| || | Sbjct 308125 CTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCA 308184 Query 34235 TCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTG 34294 || || ||||||||||| || || || || | ||||||||| ||| | | |||||| Sbjct 308185 TCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTG 308244 Query 34295 TCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGAT 34353 || ||| || ||||| | || | |||| |||| | ||| || |||| ||||| Sbjct 308245 TCCTGGATC-TTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGAT 308303 Query 34354 GGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 ||||| || || | ||||| |||||||| |||||| ||| Sbjct 308304 CGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCATCCCTC 308344 Score = 89.7 bits (98), Expect = 3e-13 Identities = 154/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 34175 CTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCG 34234 || || |||| ||| | || ||| || || |||||||| || ||||| || | Sbjct 308353 CTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCA 308412 Query 34235 TCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTG 34294 || || ||||||||||| || || || || | ||||||||| ||| | | |||||| Sbjct 308413 TCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTG 308472 Query 34295 TCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGAT 34353 || ||| || ||||| | || | |||| |||| | ||| || |||| ||||| Sbjct 308473 TCCTGGATC-TTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGAT 308531 Query 34354 GGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 ||||| || || | ||||| |||||||| |||||| ||| Sbjct 308532 CGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCATCCCTC 308572 Score = 89.7 bits (98), Expect = 3e-13 Identities = 154/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 34175 CTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCG 34234 || || |||| ||| | || ||| || || |||||||| || ||||| || | Sbjct 308581 CTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCA 308640 Query 34235 TCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTG 34294 || || ||||||||||| || || || || | ||||||||| ||| | | |||||| Sbjct 308641 TCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTG 308700 Query 34295 TCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGAT 34353 || ||| || ||||| | || | |||| |||| | ||| || |||| ||||| Sbjct 308701 TCCTGGATC-TTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGAT 308759 Query 34354 GGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 ||||| || || | ||||| |||||||| |||||| ||| Sbjct 308760 CGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCATCCCTC 308800 Score = 87.8 bits (96), Expect = 1e-12 Identities = 163/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 || ||| || |||| || || || | ||| | || ||| || || ||||| || || Sbjct 307881 GACTCCCCCTCGCAATCTTAGTACTAAGTGCAGGGTTGATTCCTTTTGAATGTTATAATC 307940 Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGAC 34278 ||||| || | || || ||||||||||| || || || || | ||||||||| Sbjct 307941 AGACAGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGG 308000 Query 34279 GGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATT 34337 ||| | | |||||||| ||| || ||||| | || | |||| |||| | || Sbjct 308001 GGGAATTCCTTCCTTGTCCTGGATC-TTAGCTTTAACATTCTCGATCGTGTCGGAGGGTT 308059 Query 34338 CGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 | || |||| ||||| ||||| || || | ||||| |||||||| |||||| ||| Sbjct 308060 CAACTTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCATCCCTC 308116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323050757511200