Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq10 131 1e-25 seq64 102 6e-17 seq131 87.8 1e-12 seq221 86.0 5e-12 >seq10 Length=3673010 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 13216 ACTGGCCCCGTTGTATGAAGCAGAGACCCGAGCAGATGGCGGATGCCGGTTTCTTCTACA 13275 ||||||| || ||||| |||| ||||| || |||| || ||||| ||||| |||| Sbjct 115743 ACTGGCCGCGGAGTATGCGCCAGAAGCCCGAAGAGCTGGCCGAAGCCGGATTCTTTTACA 115684 Query 13276 CTGGCTACGGTGACAATACAAAGTGCTTCTATTGTGACGGCGGATTGAAAGATTGGGAGC 13335 | ||| | ||||| || || || ||||| | || |||||||| | || || |||||| Sbjct 115683 CCGGCCAGGGTGATAAAACTAAATGCTTTTTCTGCGACGGCGGTCTCAAGGACTGGGAGA 115624 Query 13336 CGGAAGATGTACCTTGGGAACAGCATGTAAGATGGTTCGACCGTTGCGCCTACGTTCAGC 13395 || || || || ||||||||||| | | |||||| | ||||| |||||||||| Sbjct 115623 ATGACGACGTCCCCTGGGAACAGCACGCTCGTTGGTTCAGTAGGTGCGCTTACGTTCAGC 115564 Query 13396 TAGTCAAGGGTAGAGACTACGTACAGAAAGTCATC 13430 | |||||||| || || ||| || |||| || ||| Sbjct 115563 TCGTCAAGGGCAGGGAGTACATAGAGAAGGTGATC 115529 >seq64 Length=1946208 Score = 102 bits (112), Expect = 6e-17 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 45107 TCGCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCG 45166 || || ||||| | ||| || || | |||| || ||||| ||||| ||||||||| Sbjct 785698 TCACCTCCTCTAAGTCTCAACACAAGATGCAAGGTAGATTCCTTTTGAATATTGTAGTCG 785757 Query 45167 T-TCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGG 45225 | || | ||| | || |||| ||||||||| ||||||||||| ||||| || || || Sbjct 785758 GATAAGGTA-CGACCATCTTCCAATTGTTTTCCAGCGAATATCAATCGCTGCTGATCTGG 785816 Query 45226 AGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTC 45285 || | ||| |||||||| || || ||| || | | | | |||| |||| Sbjct 785817 TGGAATACCTTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCAGAGGCCTC 785876 Query 45286 CACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||||| | |||||| || || ||||| || ||||| || || || ||||| ||| Sbjct 785877 AACCTCTAGGGTAATGGTTTTACCCGTTAGGGTCTTAACGAAAATCTGCATTTTG 785931 >seq131 Length=856804 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||||||||||| |||||||||||| || ||||| ||||||||||| || | Sbjct 308797 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308856 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || | || || ||||| || || | | ||| ||||| || || Sbjct 308857 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308916 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| ||||| ||||| | | | |||| || || Sbjct 308917 ATTCCTTCCTTGTCCTGGATTTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308976 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||| || ||||| ||||| || | || |||||||| || ||||| ||| Sbjct 308977 TCCAAAGTGATCGTTTTGCCAGTTAAGGTTTTCACAAAAATCTGCATCTTG 309027 >seq221 Length=486136 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| ||| || |||| ||||| || || || || || Sbjct 78379 CTCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAA 78438 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| ||||||||||| ||||| | || |||||||| |||||| ||| || Sbjct 78439 GATCAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATTTTTGCCTTTACATT 78498 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| || || || | ||| || || ||||| |||| ||||| || Sbjct 78499 CTCTATGGTGTCGGAGGGTTCGACTTCTAGGGTGATGGTTTTGCCAGTCAAGGTCTTGAC 78558 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 78559 GAAGATCTGCAT 78570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395049223188295