Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq445 269 2e-67 seq10 114 1e-20 seq131 107 1e-18 seq221 82.4 6e-11 >seq445 Length=79264 Score = 269 bits (298), Expect = 2e-67 Identities = 592/878 (67%), Gaps = 18/878 (2%) Strand=Plus/Plus Query 91168 GTGGTGTACAACTCGTTCGGGTTCCATTGCGGGGCGTATAGTGTCGTTTGATAGCCCAAA 91227 || ||||| ||| || || |||||| ||| || || | | ||||||| |||||| Sbjct 26938 GTTGTGTAAGTCTCTTTAGGATTCCATGCCGGTGCATACAACGGAGTTTGATGTCCCAAA 26997 Query 91228 TCGGTATTTGACCAAGCTCCTTTAAAATCGTAAGTCATGACATATATTTTACTCAAAAAC 91287 ||||||||| |||||||| ||||||||| |||| || | || | || | Sbjct 26998 GTATCATTTGACCATGCTCCTTTGAAATCGTAACTCATAACGAAAATGTGGTCCATGTAT 27057 Query 91288 TTTTGTGCAGCGTCATAATCGACAAGTTCGATCTTGTCATAACCGGCACCGATTGCGCTT 91347 | ||| || | |||||||||| | || ||||| | || |||| |||||| Sbjct 27058 TGTTGCGCTTTTGCGTAATCGACAACCTGAATTTTGTCCCATCCAGCACTGATTGCTGAG 27117 Query 91348 GTCAATTCGTACACTTTACCTGTTTGTGCTTGCAAATCATCCAACATGTCACGCAACTCT 91407 |||| ||||||| |||||| || || |||||||| | ||| ||||| || ||| Sbjct 27118 GTCAGTTCGTACGTTTTACCAGTGGTAGCAGATAAATCATCAAGCATTTCACGTAATTCT 27177 Query 91408 TTTAGCAAAACAATGTATGTAGCAGCGTCGCGTTTCGGATCGCCAATGGCCGGATTAGCG 91467 | | |||| || ||| |||| | || | | || | || | | | || ||||| Sbjct 27178 TCCATCAAACTAACGTAAACAGCACCATCT--TCTGGGCTT-CCGAGGTCTGGGTTAGCA 27234 Query 91468 CCTTTACCGCCCGGAAATTCCCAATCAATATCTACACCGTCAAAAAATTTCCAAACTTGC 91527 |||||||| || || || ||||| |||||||| ||||||||||| |||||||| | Sbjct 27235 CCTTTACCACCAGGGAACTCCCAGTCAATATCAACACCGTCAAAGAATTTCCAGGTTAAA 27294 Query 91528 AAAAATTCTTTAACCGAATCAACGAA-CAC-GTTTCTT-CGTTTGACATCGTGCATAAAA 91584 | || |||||||| || || || || | | || ||| | || || ||| | || | Sbjct 27295 AGGAAATCTTTAACAGATTCTACAAATCGCTGTCGCTTACTCTTATCA--GTGAAGAAGA 27352 Query 91585 TAGAACGGGTCCGACAAAGTCCAGCCACCGATGGACGGTAAAACTTTTAAATGCGGGTTG 91644 |||| || || | |||||||| ||||| || || ||||||| || || | || || Sbjct 27353 -AGAAAGGATCAGCTAAAGTCCACCCACCAATTGATGGTAAAATCTTCAAGTCTGGTTTA 27411 Query 91645 GCCAACTTGGCGGCCATTATCTGACCAAAGTTGCCCTTGTAAGGCTCGTTCCAAGCGGAT 91704 || || | ||| | |||||||| ||||| || ||||| || ||||| | |||| Sbjct 27412 GCTTGTTTCAATGACATCAATTGACCAAAATTGCCTTTATAAGGTTCATTCCAGGAGGAT 27471 Query 91705 ACACCTTTTTGTGGTTTTTGTATGGCTGCCCACGGATCGTGTATGGAAACTTTAAAATCA 91764 | |||| |||| ||||| |||| || ||||| ||||| || |||||||| |||||||| Sbjct 27472 AGACCTCTTTGAGGTTTCTGTAAAGCAGCCCAAGGATCATGGATGGAAACCTTAAAATCT 27531 Query 91765 TCGCGTCCTTTGCACGATCGTTGCAAATTTTCAAAACTACCAGGTATTGTTTTGAGGGCA 91824 || || || |||| || || || | || |||||| || ||| ||| | Sbjct 27532 TCCCGACCACTGCATGAACGCTGTAGTGCTTGAAAACTTCCCTCGATTTCTTTTAAACTG 27591 Query 91825 TCGTTTAATCCATCGCCTCCGCAAATGGGTATAAAACCGTACAACAGATGGGACAAATTT 91884 || || | ||||| || || || || ||||| |||||||| | ||||| | | |||| Sbjct 27592 TCATTAATGCCATCACCCCCACATATCGGTATGAAACCGTAAAGAAGATGTGTGAGATTT 27651 Query 91885 GGCAGCGGCACCTTGTCGATTGGAAAGTTGCGTCCGTACACGCCCCATTCAACAAAGTAC 91944 || | |||||| |||| || || || | ||| || ||||||||||| ||||| Sbjct 27652 GGAATCGGCACACGATCGACGGGGAATTTCCTGGGGTATACACCCCATTCAACGAAGTAA 27711 Query 91945 GCGGCGACGGTCGCGTTA------TTGCGTCTACCAGGTTTGTTGTTTTCTCGCCAAACA 91998 || | ||| | ||| | || | |||||||| ||||||| | | Sbjct 27712 GCTCCAACG---ACTTTACCAGACGTTTGTTTGAATGGTTTGTTCTTTTCTCCCATTGAA 27768 Query 91999 TATTCTAGCGGAGTCAAATGACCACCGTCAGTGTCAGC 92036 ||||||| ||| | | ||||| ||||| |||||||| Sbjct 27769 TATTCTAACGGTGGAAGATGACTTCCGTCGGTGTCAGC 27806 >seq10 Length=3673010 Score = 114 bits (126), Expect = 1e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 20120 CCTTTGACAAGCAGCAAGTATCCACAGTTACTAAACCAACGTGCGTGTTGTTCCCATGGA 20179 || ||||| ||| | | ||| | || |||| |||||||| ||||| |||||||| || Sbjct 115554 CCCTTGACGAGCTGAACGTAAGCGCACCTACTGAACCAACGAGCGTGCTGTTCCCAGGGG 115613 Query 20180 ATGTCATCATTTTCCCAATCTTTAAGGCCGCCATTGCAATAAAAACACAAAGTTTTATCA 20239 | ||| ||||| ||||| || || || ||||| | ||| |||| || |||||||||| Sbjct 115614 ACGTCGTCATTCTCCCAGTCCTTGAGACCGCCGTCGCAGAAAAAGCATTTAGTTTTATCA 115673 Query 20240 CCGCGCGACGTATAATAAAATCCCGCTTCGGCCAATTCATCGGGCCTTTGCTTCATGCTG 20299 || | || ||| | ||||| |||||||||| || |||||| | || ||| || Sbjct 115674 CCCTGGCCGGTGTAAAAGAATCCGGCTTCGGCCAGCTCTTCGGGCTTCTGGCGCATACTC 115733 Query 20300 CGCGGCCA 20307 |||||||| Sbjct 115734 CGCGGCCA 115741 >seq131 Length=856804 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | | ||| ||||||| ||| || |||||||| |||||||||||||| || | | Sbjct 308113 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308172 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| || || ||||| ||| |||||||||| || || || ||| Sbjct 308173 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308232 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || || | | || || || | | | ||||| ||| || Sbjct 308233 ATTCCTTCCTTGTCCTGGATCT-TAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAAC 308291 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||||| |||| || || |||||||||||||| |||||||| Sbjct 308292 TTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308339 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | | ||| ||||||| ||| || |||||||| |||||||||||||| || | | Sbjct 308341 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308400 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| || || ||||| ||| |||||||||| || || || ||| Sbjct 308401 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308460 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || || | | || || || | | | ||||| ||| || Sbjct 308461 ATTCCTTCCTTGTCCTGGATCT-TAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAAC 308519 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||||| |||| || || |||||||||||||| |||||||| Sbjct 308520 TTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308567 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | | ||| ||||||| ||| || |||||||| |||||||||||||| || | | Sbjct 308569 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308628 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| || || ||||| ||| |||||||||| || || || ||| Sbjct 308629 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308688 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || || | | || || || | | | ||||| ||| || Sbjct 308689 ATTCCTTCCTTGTCCTGGATCT-TAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAAC 308747 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||||| |||| || || |||||||||||||| |||||||| Sbjct 308748 TTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308795 Score = 107 bits (118), Expect = 1e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | | ||| ||||||| ||| || |||||||| |||||||||||||| || | | Sbjct 308797 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308856 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| || || ||||| ||| |||||||||| || || || ||| Sbjct 308857 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308916 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || |||| | || || || | | | ||||| ||| || Sbjct 308917 ATTCCTTCCTTGTCCTGGATTT-TAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAAC 308975 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||| | ||||| ||||||| || || ||||| |||||||| ||||| || Sbjct 308976 TTCCAAAGTGATCGTTTTGCCAGTTAAGGTTTTCACAAAAATCTGCATCTT 309026 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || | ||| ||||| | ||| || |||||||| ||||||||||| || || | Sbjct 307884 TCCCCCTCGCAATCTTAGTACTAAGTGCAGGGTTGATTCCTTTTGAATGTTATAATCAGA 307943 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | |||||| || || ||||| ||| |||||||||| || || || ||| Sbjct 307944 CAGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGG 308003 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | |||||||| || || | | || || || | | | ||||| ||| || Sbjct 308004 AATTCCTTCCTTGTCCTGGATCT-TAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAA 308062 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||||| |||| || || |||||||||||||| |||||||| Sbjct 308063 CTTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308111 >seq221 Length=486136 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || || ||||||||||||||||| |||| | || | || ||||||||| Sbjct 79280 TGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAAAGAGTACGTCCGTCCTCCAATTGT 79339 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| | || ||| ||||| || | || || || || ||||| | Sbjct 79340 TTTCCTGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCCTCTTTGTCTTGAATTT-T 79398 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || || || | | ||| ||| || || ||| ||| | || ||| | || || || Sbjct 79399 GGCTTTAACATTTTCAATAGTATCCGAAGGTTCGACTTCCAAAGTTATGGTCTTTCCAGT 79458 Query 18302 CAATGTTTTTACAAAAATTTGCATTTT 18328 | |||||||||||||| |||||||| Sbjct 79459 AAGCGTTTTTACAAAAATCTGCATTTT 79485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379319057539275