Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq445 259 4e-64 >seq445 Length=79264 Score = 259 bits (286), Expect = 4e-64 Identities = 844/1298 (65%), Gaps = 31/1298 (2%) Strand=Plus/Plus Query 35662 CAAGCCAATATGCATAGCGTTGAGCAAATCGCCGTTGTCCGCATCGATTTCCCATGCGAA 35721 ||| || || | ||||||||| || ||||| || ||||| ||||| |||||||| ||||| Sbjct 26529 CAAACCCATGTTCATAGCGTTCAGTAAATCACCATTGTCGGCATCAATTTCCCACGCGAA 26588 Query 35722 TAATCCGCCGAGTCTACGCTGAAGCACGTATTCGCCTTTGGCCAGTACCGATCTTTCGCT 35781 | || |||||| || | || |||| || || | | || |||||| | | Sbjct 26589 GAGACCACCGAGTTTATTATTCCTTACATATTTACCCTTTTCAATAACAGATCTTGCATT 26648 Query 35782 GTCATACGATATTAAGTCGCCAGAGGCGCGGTC-GAATACGTACGCAGCCTTGGCCACGT 35840 || || | | | ||| || | | |||| ||| || || | ||||| ||| || | Sbjct 26649 ATCGTAAGTGACGAGGTCCCCGGTAGAT-GGTCTGAAGACATAAGGAGCCTGGGCTACAT 26707 Query 35841 CGTCGAATGCGTATTCGTAAC------GCGAAATGTTTTTAGCAATCTGTCTGTAGTCGA 35894 |||| | | |||| | | | || | || || || | ||| || || | Sbjct 26708 TGTCGTAGTGGAATTCCCATTTTCCTTGGGCTATTTCGTTGGCGATTTCTCTATAATCAA 26767 Query 35895 CCACGCCGTTTTCCCATGTACCCGTGATCGGTCCGACGGCTACGCCACTGAATGGATTGT 35954 || |||| || |||||| || ||| ||||| || ||| |||||||||| | Sbjct 26768 TAACACCGTCTTGCCATGTTCCTTTGACTGGTCCAGTAGCATTGCCTGTGAATGGATTAT 26827 Query 35955 CACTGTTGTAGTTGTGGACGCCCGTCCAACCGCGGCCGTACATTGCTACGCCCAACACGA 36014 | | ||| | || || ||||| || || || ||||| || || || | |||| Sbjct 26828 TTCCCTCGTAACCATTAACCCCAGTCCATCCTCGACCATACATAGCAACACCAACTACGA 26887 Query 36015 GtttttttGGATTCACTCGTTGCGCGAGCAAAGCGTCCACGGCCACGTTGGCGGTGTACG 36074 ||||| || ||| | ||| || | |||| | ||| | | || || ||||| | Sbjct 26888 TCTTTTTCGGTGACACACCTTGAGCTAACAAATATTTCACACCGAAGTCGGTTGTGTAAG 26947 Query 36075 GTTCGTTAGGTTTCCACGCGGAACCGTACAGTGCCGTCTGATGACCGAGATCGGTATTAG 36134 || ||||| ||||| || | | |||| | || ||||| || | | ||| | Sbjct 26948 TCTCTTTAGGATTCCATGCCGGTGCATACAACGGAGTTTGATGTCCCAAAGTATCATTTG 27007 Query 36135 ACCAAGCTCCTTTGAAATCATAACTCATCACGAAAATTTTATCTAAATACTGTTGTGCTC 36194 |||| |||||||||||||| |||||||| |||||||| | || | || ||||| ||| Sbjct 27008 ACCATGCTCCTTTGAAATCGTAACTCATAACGAAAATGTGGTCCATGTATTGTTGCGCTT 27067 Query 36195 GGTCGTAATTAACCGCGGCGATCTTGTCTATGCCAGCGCTAATCGCTGTGGTGAGTTCTA 36254 |||||| || | || ||||| ||||| || || |||| ||| ||||| Sbjct 27068 TTGCGTAATCGACAACCTGAATTTTGTCCCATCCAGCACTGATTGCTGAGGTCAGTTC-- 27125 Query 36255 AAGTACGATT---CGTTTGTATTTGA-ACTTGATCGAGCATGGCGCGCAATTCGCCCAAT 36310 ||||| || | | ||| || | | ||| ||||| | || ||||| ||| Sbjct 27126 --GTACGTTTTACCAGTGGTAGCAGATAAATCATCAAGCATTTCACGTAATTCTTCCATC 27183 Query 36311 AAAGCGA--TATAC-GTGTTATTGTCGCGTTCCACATCGCCAACGTTTGGATTGGCGCCT 36367 ||| | || || | || || | | || | | || ||| || || ||| Sbjct 27184 AAACTAACGTAAACAGCACCATCTTCTGGG----CTTC--CGAGGTCTGGGTTAGCACCT 27237 Query 36368 TTGCCGCCCGGAAATTCCCAATCAATATCGATGCCGTCGAAAAATTTCCATGTCAACACA 36427 || || || || || ||||| |||||||| | ||||| || |||||||| || || | Sbjct 27238 TTACCACCAGGGAACTCCCAGTCAATATCAACACCGTCAAAGAATTTCCAGGTTAAAAGG 27297 Query 36428 AATTCACGCACGGATTCGACAAAAATTTGTCGCGTTCGCGCATC-GTGCATATGATAGAA 36486 || || || ||||| ||||| |||||| | | | ||| ||| | | || |||| Sbjct 27298 AAATCTTTAACAGATTCTACAAATCGCTGTCGCTTACTCTTATCAGTGAAGAAGA-AGAA 27356 Query 36487 GGGATCGGACAGTGTCCAACCGCCGATTGATGCCAACACTTTTAGATTGGGATTGGCCAA 36546 ||||| | | ||||| || || ||||||| || | || | | || || || Sbjct 27357 AGGATCAGCTAAAGTCCACCCACCAATTGATGGTAAAATCTTCAAGTCTGGTTTAGCTTG 27416 Query 36547 TTTTGCTGCCATTAATTGACCAAAATTGCCTTTGTAGGGTTCGTTCCATGCGCTAACGCC 36606 ||| || ||| |||||||||||||||||||| || ||||| ||||| | | | || Sbjct 27417 TTTCAATGACATCAATTGACCAAAATTGCCTTTATAAGGTTCATTCCAGGAGGATAGACC 27476 Query 36607 TGTTTGTGGTTTTTGGAGCGCCGCCCACGGATCGTGTATGGAAACTTTAAAATTGTCCCT 36666 | |||| ||||| || | || ||||| ||||| || |||||||| ||||||| |||| Sbjct 27477 TCTTTGAGGTTTCTGTAAAGCAGCCCAAGGATCATGGATGGAAACCTTAAAATCTTCCCG 27536 Query 36667 GCCAGCGCACGATCTTTGCAACGCTTCAAAACTCCCCGTGATAGATTTTAAACTGTCGTT 36726 ||| ||| || | || | |||| |||||| ||| ||| |||||||||||| || Sbjct 27537 ACCACTGCATGAACGCTGTAGTGCTTGAAAACTTCCCTCGATTTCTTTTAAACTGTCATT 27596 Query 36727 TATACCGTCACCGCCGCAAATCGGTATAAATCCGTATAAAATGTGCGAAAGGTTCGGCGT 36786 || || ||||| || || |||||||| || ||||| | || || | || || || | Sbjct 27597 AATGCCATCACCCCCACATATCGGTATGAAACCGTAAAGAAGATGTGTGAGATTTGGAAT 27656 Query 36787 GGGCACTTTGTCCACGGGAAAAGATCGACCGTAAACGCCCCATTCGACAAAATAGGCCGC 36846 ||||| || ||||| || | ||| || |||||||| || || || || | Sbjct 27657 CGGCACACGATCGACGGGGAATTTCCTGGGGTATACACCCCATTCAACGAAGTAAGCTCC 27716 Query 36847 TACGGTGTGATCAG--TGTTGTACGTATACGGTTTATTGTTTTCTTGCCACGTGTATTGT 36904 ||| | | ||| |||| | || ||||| || |||||| | | |||| | Sbjct 27717 AACGACTTTACCAGACGTTTGTTTGAAT--GGTTTGTTCTTTTCTCCCATTGAATATTCT 27774 Query 36905 AACGGTTTTAAATGTTTACCATCGGTGTCTGCGATCAC 36942 |||||| | ||| | || |||||||| || || || Sbjct 27775 AACGGTGGAAGATGACTTCCGTCGGTGTCAGCAATTAC 27812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418276495858400