Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq219 489 2e-133 seq149 134 2e-26 >seq219 Length=603346 Score = 489 bits (542), Expect = 2e-133 Identities = 1021/1504 (68%), Gaps = 24/1504 (2%) Strand=Plus/Plus Query 62013 ACCACTTGTGGTTTTAT-TTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGG 62071 |||| | ||| ||||| |||| ||| || | |||||||| || | | || || || Sbjct 377111 ACCATTGGTGATTTTAACTTTAGACTTATCTACGGTGAATTGTATAGCATTGGCAGCTGG 377170 Query 62072 TTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCAT 62131 ||| || |||| ||||||||| || ||||| ||||| | ||||| ||||||| || || Sbjct 377171 TTTTGTTCGTAAATAGTACATGCCAGTTTTCAGACCCATTTTCCATGCGTAAAAGTGTAT 377230 Query 62132 ACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATC 62191 |||| ||| |||| | || ||||| | ||| || || | || |||||||| || Sbjct 377231 GGATGTTAATTTTCCATAATTTGGTTCTGCGACATGTATGTTAAATGACTGACTTTGGTC 377290 Query 62192 GATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAAT 62251 || |||||||| ||||| |||||||||| || | ||||| | ||| ||||| | Sbjct 377291 TATAAAGGCTCCTCTGTCCGCAGCCATTTGAATTGTTGTCTTGACGGAAATCTCCCATAC 377350 Query 62252 AGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG-GTTTGTAT--TCTGAATGGATCCAC 62307 |||||||| | || || | | |||| || | | || || |||||||||| ||| Sbjct 377351 TGTTTTATACAGATCTCTGA-TGTCTTTGGGTATTGCTTCAATGTTCTGAATGGAACCAT 377409 Query 62308 CATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCG-GTTAAAACT 62366 | ||||| |||||| || || |||| ||||| | | || | || ||| || Sbjct 377410 TGTTATGTATAATGAGATTCTTCATTTCTTCATCCCATAGATC-CGCTTGAGTCAAATCT 377468 Query 62367 CTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATA 62426 | | ||||| |||| || ||||| || ||||||||||| |||| | |||||| Sbjct 377469 GTTAAAAGATGATGGTTGACCACTTGAAACTCTCCAGACAAAACTCGTCTTTGGTAAATG 377528 Query 62427 TTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTC 62486 || ||| | ||||| | ||| ||||||||||| | |||||||| || || ||||| Sbjct 377529 TTTGATGTAAAAGGTTCAAACGATTCATTATTTCCTAGTATTTGAGCGGTGGAGGCAGTG 377588 Query 62487 GGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTA 62544 ||||| || || | | | ||| | |||||| ||| | || ||||| ||||| | Sbjct 377589 GGCATTGGCGCTAATAGAAGGGAATTACGAAGACC--ATGCTTTGCAATTTTTTCTTTAA 377646 Query 62545 GATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATAC 62604 || |||||| ||||||||| | ||| || |||||||| | Sbjct 377647 GAGCAGCCCAATCCCAAAGATCTGTGGGTGTTTTGTTCCACATATCGTACTGTAGAATCC 377706 Query 62605 CGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTA 62663 | | || || | || ||| | || || || || || |||| |||| | | Sbjct 377707 CTTGGCTAGCAGGACTTCCCT-CGTAAGTGCTGTAAACACCATCTCTCTCGGCTAACTCA 377765 Query 62664 CAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGT 62723 ||||| ||||| | ||||||||||| || |||||||| || | || ||| || | | Sbjct 377766 CAACTTGCCTCGAGCGCACCGTAATAGATCGTTTCAAATATTTGCTGATTAAGTAATATT 377825 Query 62724 GCTTCCGGGCTATCAAATGGATAATTTAAGA-GAATAAACGCGTCCGCTAATCCTTGAAC 62782 || | | || ||| | || |||| | | | ||| ||| || ||||||||||| ||||| Sbjct 377826 GCCTTCTCACTCTCATACGG-TAATCTCATAAGAACAAATGCATCCGCTAATCCCTGAAC 377884 Query 62783 ACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATA 62842 || ||||| || || || ||| || |||| ||| ||| || || || | ||||||| | Sbjct 377885 GCCGATACCAATGGGCCTGTGTTTCATATTCGAGTTTTTCGCCTCCGGTACAGGATAAAA 377944 Query 62843 ATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACC-ACATCCTTCAGTT 62901 || | ||| |||||||| || |||||| || | | ||| | || || ||||||| Sbjct 377945 GTTGACATCAATAATTTTGTTCAGATTT-TGTGTAACAGTTTTAGTTACTTCTTTCAGTT 378003 Query 62902 TGAGAAAATCAAATCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTAC 62961 | ||||| ||| | | |||||||| || | || | || || ||||| | Sbjct 378004 TTTTGAAATCGAATTTTTTGTTTTCAACAAACATATTTAGAGCTATTGAGGCGAGATTGC 378063 Query 62962 ACACGGCTACCTCATTAGCATCCGC---ATATTGTATTATCTCAGTGCAAAGATTACTAC 63018 ||||||| ||||||| | |||| ||||| | || ||||| || | |||||| | Sbjct 378064 ACACGGCAACCTCAT---CTTCCGATGTATATTCAACAATTTCAGTACACAAATTACTGC 378120 Query 63019 ACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 63078 | ||||||||||| | ||||| ||||||||| ||| ||||||| ||||| || || || | Sbjct 378121 ATTTGATAGTTCCAAGATTTTTTTGATTACTTTTTCTGTTACATGCATCTTTGTACAGCA 378180 Query 63079 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 63138 || |||||||||||||||| | || | ||| ||||| |||||||| | | |||| Sbjct 378181 TGTATGGAGTACCAGTTTCGACTTGCGCTTCAATAATGGCTTTCCATAATATCTGAGCGC 378240 Query 63139 TTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGT 63198 || | |||| ||||| ||| ||| |||||| ||| || || | Sbjct 378241 GTACTTGCCTGACAAATCTGTTTTCTTGTTCATATTTCTCATACAACGCTTCAAATTCTT 378300 Query 63199 CTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGT 63258 | || || || | | | ||||| | || |||||||||| ||| | | | | Sbjct 378301 CACCGTAACAATCATAAAGCCCTGGACAGTTATGGGGACACATCAGACTCCAATTTTCAT 378360 Query 63259 CATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTG 63318 || || | ||||| || | ||| || ||||| ||||| ||| | ||||| | Sbjct 378361 TTCTCTCAACCCTCTTCATGAACAAATCTGGTATCCATAGAGCATAAAACAATTCTCTGG 378420 Query 63319 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 63378 || ||| || |||||||| ||||| || | ||| | ||| | | |||||||||| Sbjct 378421 CCCTCACTTCTTCCTTTCCTGTGTTCTTCTTTAAATCCAAAAACTCGAAGATATCAGAAT 378480 Query 63379 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 63438 ||||||| |||| || ||||| | |||| || ||||| || || || ||||| | | Sbjct 378481 GCCACGGCTCCACATAGATGGCGAATGCTCCCGGACGTTTATTGCCCCCTTGATCAACAT 378540 Query 63439 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGG 63498 |||| || ||||||||||| || |||||||| |||| | || ||||| |||||||| | Sbjct 378541 ATCTTGCTGTGTTATTATACACCCTCAACATCGGAACGAGTCCATTTGAAATACCATTTG 378600 Query 63499 TACC 63502 |||| Sbjct 378601 TACC 378604 >seq149 Length=636072 Score = 134 bits (148), Expect = 2e-26 Identities = 142/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 33847 TAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCT 33906 ||| ||| ||||| |||| ||| |||||||||||| |||| ||||| || || |||| Sbjct 239134 TAATATATGTATCAATCAGAAGTGAATACATTTCCGAGTGAACATTTTCCATAGCAATCT 239075 Query 33907 GAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTA 33966 | || || ||||| ||||| ||||| || | ||| ||||| | || |||||| | | Sbjct 239074 GGAAACCATAGAAGCATCTCGCCTCAGTCACCTGAACTTCCTGGGAGAAGCGTTCTACGA 239015 Query 33967 AATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 34026 ||| ||||| ||||| ||||| || |||||||||||||||||||| || ||||| | Sbjct 239014 GATTCTCATTTACTATACCATCTGATGCCGCAAAAAACGCCAATACATGCTTAATAAAGT 238955 Query 34027 ATTTTTC 34033 | |||| Sbjct 238954 GTCTTTC 238948 Score = 95.1 bits (104), Expect = 2e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 ||||||| || |||||||| || ||||| || || ||||||||||| || ||||| | | Sbjct 238709 TTAGATAAGTCAACTTCTTCAACAGTCCAGAAAGAAGCCTCTGCCTTCTTGTACATTTGC 238650 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAATC 34164 || || ||| |||| ||||| ||||| |||||||||| Sbjct 238649 CATATATCAGGATACTGGATGGGGAATATAACAAATC 238613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629775126675600