Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017
-06-23] 5,395 sequences; 248,577,651 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq219 489 2e-133
seq149 134 2e-26
>seq219
Length=603346
Score = 489 bits (542), Expect = 2e-133
Identities = 1021/1504 (68%), Gaps = 24/1504 (2%)
Strand=Plus/Plus
Query 62013 ACCACTTGTGGTTTTAT-TTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGG 62071
|||| | ||| ||||| |||| ||| || | |||||||| || | | || || ||
Sbjct 377111 ACCATTGGTGATTTTAACTTTAGACTTATCTACGGTGAATTGTATAGCATTGGCAGCTGG 377170
Query 62072 TTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCAT 62131
||| || |||| ||||||||| || ||||| ||||| | ||||| ||||||| || ||
Sbjct 377171 TTTTGTTCGTAAATAGTACATGCCAGTTTTCAGACCCATTTTCCATGCGTAAAAGTGTAT 377230
Query 62132 ACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATC 62191
|||| ||| |||| | || ||||| | ||| || || | || |||||||| ||
Sbjct 377231 GGATGTTAATTTTCCATAATTTGGTTCTGCGACATGTATGTTAAATGACTGACTTTGGTC 377290
Query 62192 GATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAAT 62251
|| |||||||| ||||| |||||||||| || | ||||| | ||| ||||| |
Sbjct 377291 TATAAAGGCTCCTCTGTCCGCAGCCATTTGAATTGTTGTCTTGACGGAAATCTCCCATAC 377350
Query 62252 AGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG-GTTTGTAT--TCTGAATGGATCCAC 62307
|||||||| | || || | | |||| || | | || || |||||||||| |||
Sbjct 377351 TGTTTTATACAGATCTCTGA-TGTCTTTGGGTATTGCTTCAATGTTCTGAATGGAACCAT 377409
Query 62308 CATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCG-GTTAAAACT 62366
| ||||| |||||| || || |||| ||||| | | || | || ||| ||
Sbjct 377410 TGTTATGTATAATGAGATTCTTCATTTCTTCATCCCATAGATC-CGCTTGAGTCAAATCT 377468
Query 62367 CTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATA 62426
| | ||||| |||| || ||||| || ||||||||||| |||| | ||||||
Sbjct 377469 GTTAAAAGATGATGGTTGACCACTTGAAACTCTCCAGACAAAACTCGTCTTTGGTAAATG 377528
Query 62427 TTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTC 62486
|| ||| | ||||| | ||| ||||||||||| | |||||||| || || |||||
Sbjct 377529 TTTGATGTAAAAGGTTCAAACGATTCATTATTTCCTAGTATTTGAGCGGTGGAGGCAGTG 377588
Query 62487 GGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTA 62544
||||| || || | | | ||| | |||||| ||| | || ||||| ||||| |
Sbjct 377589 GGCATTGGCGCTAATAGAAGGGAATTACGAAGACC--ATGCTTTGCAATTTTTTCTTTAA 377646
Query 62545 GATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATAC 62604
|| |||||| ||||||||| | ||| || |||||||| |
Sbjct 377647 GAGCAGCCCAATCCCAAAGATCTGTGGGTGTTTTGTTCCACATATCGTACTGTAGAATCC 377706
Query 62605 CGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTA 62663
| | || || | || ||| | || || || || || |||| |||| | |
Sbjct 377707 CTTGGCTAGCAGGACTTCCCT-CGTAAGTGCTGTAAACACCATCTCTCTCGGCTAACTCA 377765
Query 62664 CAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGT 62723
||||| ||||| | ||||||||||| || |||||||| || | || ||| || | |
Sbjct 377766 CAACTTGCCTCGAGCGCACCGTAATAGATCGTTTCAAATATTTGCTGATTAAGTAATATT 377825
Query 62724 GCTTCCGGGCTATCAAATGGATAATTTAAGA-GAATAAACGCGTCCGCTAATCCTTGAAC 62782
|| | | || ||| | || |||| | | | ||| ||| || ||||||||||| |||||
Sbjct 377826 GCCTTCTCACTCTCATACGG-TAATCTCATAAGAACAAATGCATCCGCTAATCCCTGAAC 377884
Query 62783 ACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATA 62842
|| ||||| || || || ||| || |||| ||| ||| || || || | ||||||| |
Sbjct 377885 GCCGATACCAATGGGCCTGTGTTTCATATTCGAGTTTTTCGCCTCCGGTACAGGATAAAA 377944
Query 62843 ATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACC-ACATCCTTCAGTT 62901
|| | ||| |||||||| || |||||| || | | ||| | || || |||||||
Sbjct 377945 GTTGACATCAATAATTTTGTTCAGATTT-TGTGTAACAGTTTTAGTTACTTCTTTCAGTT 378003
Query 62902 TGAGAAAATCAAATCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTAC 62961
| ||||| ||| | | |||||||| || | || | || || ||||| |
Sbjct 378004 TTTTGAAATCGAATTTTTTGTTTTCAACAAACATATTTAGAGCTATTGAGGCGAGATTGC 378063
Query 62962 ACACGGCTACCTCATTAGCATCCGC---ATATTGTATTATCTCAGTGCAAAGATTACTAC 63018
||||||| ||||||| | |||| ||||| | || ||||| || | |||||| |
Sbjct 378064 ACACGGCAACCTCAT---CTTCCGATGTATATTCAACAATTTCAGTACACAAATTACTGC 378120
Query 63019 ACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 63078
| ||||||||||| | ||||| ||||||||| ||| ||||||| ||||| || || || |
Sbjct 378121 ATTTGATAGTTCCAAGATTTTTTTGATTACTTTTTCTGTTACATGCATCTTTGTACAGCA 378180
Query 63079 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 63138
|| |||||||||||||||| | || | ||| ||||| |||||||| | | ||||
Sbjct 378181 TGTATGGAGTACCAGTTTCGACTTGCGCTTCAATAATGGCTTTCCATAATATCTGAGCGC 378240
Query 63139 TTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGT 63198
|| | |||| ||||| ||| ||| |||||| ||| || || |
Sbjct 378241 GTACTTGCCTGACAAATCTGTTTTCTTGTTCATATTTCTCATACAACGCTTCAAATTCTT 378300
Query 63199 CTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGT 63258
| || || || | | | ||||| | || |||||||||| ||| | | | |
Sbjct 378301 CACCGTAACAATCATAAAGCCCTGGACAGTTATGGGGACACATCAGACTCCAATTTTCAT 378360
Query 63259 CATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTG 63318
|| || | ||||| || | ||| || ||||| ||||| ||| | ||||| |
Sbjct 378361 TTCTCTCAACCCTCTTCATGAACAAATCTGGTATCCATAGAGCATAAAACAATTCTCTGG 378420
Query 63319 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 63378
|| ||| || |||||||| ||||| || | ||| | ||| | | ||||||||||
Sbjct 378421 CCCTCACTTCTTCCTTTCCTGTGTTCTTCTTTAAATCCAAAAACTCGAAGATATCAGAAT 378480
Query 63379 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 63438
||||||| |||| || ||||| | |||| || ||||| || || || ||||| | |
Sbjct 378481 GCCACGGCTCCACATAGATGGCGAATGCTCCCGGACGTTTATTGCCCCCTTGATCAACAT 378540
Query 63439 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGG 63498
|||| || ||||||||||| || |||||||| |||| | || ||||| |||||||| |
Sbjct 378541 ATCTTGCTGTGTTATTATACACCCTCAACATCGGAACGAGTCCATTTGAAATACCATTTG 378600
Query 63499 TACC 63502
||||
Sbjct 378601 TACC 378604
>seq149
Length=636072
Score = 134 bits (148), Expect = 2e-26
Identities = 142/187 (76%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 33847 TAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCT 33906
||| ||| ||||| |||| ||| |||||||||||| |||| ||||| || || ||||
Sbjct 239134 TAATATATGTATCAATCAGAAGTGAATACATTTCCGAGTGAACATTTTCCATAGCAATCT 239075
Query 33907 GAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTA 33966
| || || ||||| ||||| ||||| || | ||| ||||| | || |||||| | |
Sbjct 239074 GGAAACCATAGAAGCATCTCGCCTCAGTCACCTGAACTTCCTGGGAGAAGCGTTCTACGA 239015
Query 33967 AATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 34026
||| ||||| ||||| ||||| || |||||||||||||||||||| || ||||| |
Sbjct 239014 GATTCTCATTTACTATACCATCTGATGCCGCAAAAAACGCCAATACATGCTTAATAAAGT 238955
Query 34027 ATTTTTC 34033
| ||||
Sbjct 238954 GTCTTTC 238948
Score = 95.1 bits (104), Expect = 2e-14
Identities = 79/97 (81%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127
||||||| || |||||||| || ||||| || || ||||||||||| || ||||| | |
Sbjct 238709 TTAGATAAGTCAACTTCTTCAACAGTCCAGAAAGAAGCCTCTGCCTTCTTGTACATTTGC 238650
Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAATC 34164
|| || ||| |||| ||||| ||||| ||||||||||
Sbjct 238649 CATATATCAGGATACTGGATGGGGAATATAACAAATC 238613
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629775126675600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |