Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq219 419 2e-112 seq149 105 6e-18 >seq219 Length=603346 Score = 419 bits (464), Expect = 2e-112 Identities = 1011/1510 (67%), Gaps = 35/1510 (2%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || ||||||| ||||| ||| | || | |||||||| | ||| ||||| |||||| Sbjct 377139 TCTACGGTGAATTGTATAGCATTGGCAGCTGGTTTTGTTCGTAAATAGTACATGCCAGTT 377198 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || || |||| | ||||| ||||||| || || || | |||| | || | || | Sbjct 377199 TTCAGACCCATTTTCCATGCGTAAAAGTGTATGGATGTTAATTTTCCATAATTTGGTTCT 377258 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | || ||| | | ||| |||||||| |||||||| || |||||||| || |||||| Sbjct 377259 GCGACATGTATGTTAAATGACTGACTTTGGTCTATAAAGGCTCCTCTGTCCGCAGCCATT 377318 Query 36970 TCTAAAATACATTTTTGA--GATATCTCCCAAACCGTTTTATATATTTGTTTTATATTAT 37027 | || | | |||| || |||||||| || |||||||| | | | | || | | Sbjct 377319 TG--AATTGTTGTCTTGACGGAAATCTCCCATACTGTTTTATACAGATCTCTGATGTCTT 377376 Query 37028 CTGGTAAATCTA-AATGTT--GAATAGAACCATT---ATGTAACACAATTGTATTCTTTA 37081 |||| || |||||| |||| |||||||| ||||| ||| |||||| | Sbjct 377377 TGGGTATTGCTTCAATGTTCTGAATGGAACCATTGTTATGTAT---AATGAGATTCTTCA 377433 Query 37082 TGTCATTATTCCACATATTTCTACTTA--TTAGTTCTCTCAATAGGTGTGGATTTACAAC 37139 | || | || ||| | || | ||| | | ||| | || || || | || || || Sbjct 377434 TTTCTTCATCCCATAGAT--CCGCTTGAGTCAAATCTGTTAAAAGATGATGGTTGACCAC 377491 Query 37140 CTGAAAATCTCCAGATAATACTCTTCTT--GTATATATATTGCTAGTATATGGTTCAATG 37197 ||||| |||||||| || |||| |||| ||| || | ||| | ||| | ||||||| Sbjct 377492 TTGAAACTCTCCAGACAAAACTCGTCTTTGGTAAATGT-TTGAT-GTAAAAGGTTCAAAC 377549 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 || |||||||| | || |||||||| || || ||||| |||||||| |||| ||||||| Sbjct 377550 GATTCATTATTTCCTAGTATTTGAGCGGTGGAGGCAGTGGGCATTGGCGCTAATAGAAGG 377609 Query 37258 CTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCT 37317 ||| | | ||||| | |||| | | ||| || || ||||||||| | |||| Sbjct 377610 GAATTACGAAGACCATGCTTTGCAATTTTTTCTTTAAGAGCAGCCCAATCCCAAAGATCT 377669 Query 37318 GTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTA 37377 || || | || ||||||||| || |||||||| |||| || || ||| | | Sbjct 377670 GTGGGTGTTTTGTTCCACATATCGTACTGTAGAATCCCTTGGCTAGCAGGACTTCCCTCG 377729 Query 37378 TATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAA 37437 || || ||| || | | | |||| || ||||| | || || || | ||| Sbjct 377730 TAAGTGCTGTAAACACCATCTCTCTCGGCTAACTCACAACTTGCCTCGAGCGCACCGTAA 377789 Query 37438 TATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAG 37497 || || ||||| || ||||| ||| | || | |||| | || || || | | | Sbjct 377790 TAGATCGTTTCAAATATTTGCTGATTAAGTAATATTGCCTTCTCACTCTCATACGGTAAT 377849 Query 37498 CCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTC 37557 | || | | ||| |||| || || |||||||| |||||||| ||||| || |||||| Sbjct 377850 CTCATAAGAACAAATGCATCCGCTAATCCCTGAACGCCGATACCAATGGGCCTGTGTTTC 377909 Query 37558 TTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGA 37617 |||| || | || || || |||||| | |||| ||| || ||||| || ||| Sbjct 377910 ATATTCGAGTTTTTCGCCTCCGGTACAGGATAAAAGTTGACATCAATAATTTTGTTCAGA 377969 Query 37618 TTTT---TAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTATTA 37674 |||| |||| ||| ||| || | | | ||| || | ||| ||| || || Sbjct 377970 TTTTGTGTAAC-AGT--TTTAGTTACTTCTTTCAGTTTTTTGAAATCGAATTTTTTGTTT 378026 Query 37675 TTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTA 37734 | |||||| || | | | || || | ||||| || || ||||| |||||||| Sbjct 378027 TCAACAAACATATTTAGAGCTATTGAGGCGAGATTGCACACGGCAACCTCATCTTCCGAT 378086 Query 37735 CTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGA 37794 || ||| | ||| || ||||| | |||||| || | || ||||| | ||| ||||| Sbjct 378087 GTATATTCAACAATTTCAGTACACAAATTACTGCATTTGATAGTTCCAAGATTTTTTTGA 378146 Query 37795 TTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGA 37854 || |||| | ||||| | |||||| || || || || || || || ||| | ||| Sbjct 378147 TTACTTTTTCTGTTACATGCATCTTTGTACAGCATGTATGGAGTACCAGTTTCGACTTGC 378206 Query 37855 GCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTA---AtttttttC 37911 || || ||||| | ||||||||| | || || | || | | || | ||| Sbjct 378207 GCTTCAATAATGGCTTTCCATAATATCTGAGCGCGTAC--TTGCCTGACAAATCTGTTTT 378264 Query 37912 TTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACA-TCGCATAATCC 37970 ||||| | |||| ||| || | ||| || ||| || ||| || | | || Sbjct 378265 CTTGTT-CATATTTCTCATACAACGCTTCAAATTC-TTCACCGTAACAATCATAAAGCCC 378322 Query 37971 TGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAA 38030 |||||| | |||||||| ||| ||| | ||||| | | || || | | ||| || Sbjct 378323 TGGACAGTTATGGGGACACATCAGACTCCAATTTTCATTTCTCTCAACCCTCTTCATGAA 378382 Query 38031 TAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTAC 38090 ||||| |||| ||||| ||| ||| || ||| ||| || |||||| || ||| Sbjct 378383 CAAATCTGGTATCCATAGAGCATAAAACAATTCTCTGGCCCTCACTTCTTCCTTTCCTGT 378442 Query 38091 ATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGA 38150 ||||| |||| | ||| ||||| ||||||| ||||| || || | ||| || | Sbjct 378443 GTTCTTCTTTAAATCCAAAAACTCGAAGATATCAGAATGCCACGGCTCCACATAGATGGC 378502 Query 38151 CATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATAT 38210 | |||||| || | ||||| || || |||| || |||||| ||||||||||||| | Sbjct 378503 GAATGCTCCCGGACGTTTATTGCCCCCTTGATCAACATATCTTGCTGTGTTATTATACAC 378562 Query 38211 TCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTT 38270 || ||||| || || | ||||| || | || ||| |||| | ||| ||||| || || Sbjct 378563 CCTCAACATCGGAACGAGTCCATTTGAAATACCATTTGTACCAGCTATGTAAGTTCCTTT 378622 Query 38271 AGCTCGTATA 38280 ||||| |||| Sbjct 378623 AGCTCTTATA 378632 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 38350 ATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAAT 38409 || ||||| ||||| || || || || | | |||||| |||| ||||| | Sbjct 378657 ATTCCTTCAATACTATCGTCTTTCATGCCAATAAGAAAACAGGATGACAACTGAGGTCTT 378716 Query 38410 GGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAA 38469 ||||| | || || ||||||||| |||||| |||| |||| || ||||| || Sbjct 378717 GGAGTCGCAGCTGAGAACAATGTAGGACTCGCATGTGTGAAATATTTCTCAGACAACAAA 378776 Query 38470 TTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATT 38529 || ||||| | ||| || |||| ||||| ||||||| || | || || | ||| Sbjct 378777 TTGTATGTGTTTATAGCAGCATCAATATCTTTATCGTGAATTCCAATAGCAACACGCATC 378836 Query 38530 AGCATATGTTGTGGTCTTTC 38549 |||||||||||||| | ||| Sbjct 378837 AGCATATGTTGTGGACGTTC 378856 >seq149 Length=636072 Score = 105 bits (116), Expect = 6e-18 Identities = 167/238 (70%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 11880 TTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATAT 11939 ||||| || || || | ||||||||| || | | ||||||||| || |||| || Sbjct 239149 TTTCTTTAGGGTCCCTAATATATGTATCAATCAGAAGTGAATACATTTCCGAGTGAACAT 239090 Query 11940 TTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACAT 11999 |||||||||| || || || |||||||| |||| ||||| | ||| || ||| Sbjct 239089 TTTCCATAGCAATCTGGAAACCATAGAAGCATCTCGCCTCAGTCACCTGAACTTCCTGGG 239030 Query 12000 AAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTA 12059 | || | ||| | | |||||||||||| |||||||| | |||||||| || | || Sbjct 239029 AGAAGCGTTCTACGAGATTCTCATTTACTATACCATCTGATGCCGCAAAAAACGCCAATA 238970 Query 12060 TATGTTTTATAAAGTATTTTTC---GTCTTTAGTTAATTTATCCCAATCATCTAAATC 12114 ||| || ||||||| | |||| ||| | |||| | ||||||||| ||||| Sbjct 238969 CATGCTTAATAAAGTGTCTTTCACAGTCCT---TTAAACTTTCCCAATCACTCAAATC 238915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468493203858800