Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq445 199 4e-46 seq219 134 1e-26 seq221 113 4e-20 seq131 98.7 1e-15 >seq445 Length=79264 Score = 199 bits (220), Expect = 4e-46 Identities = 662/1014 (65%), Gaps = 32/1014 (3%) Strand=Plus/Plus Query 20341 TAATCGACCACACCGTCTTCCCAAGTGCCGGCGACGGGACCGGTGGCCGTGCCCGCGAAA 20400 ||||| | |||||||||| ||| || || ||| || || || || |||| | ||| Sbjct 26761 TAATCAATAACACCGTCTTGCCATGTTCCTTTGACTGGTCCAGTAGCATTGCCTGTGAAT 26820 Query 20401 GGATTATCACTATCG---CTCTTCACACCGGTCCAACCGCGCCCGTACATTGCTACACCC 20457 ||||||| | ||| | || || || ||||| || || || ||||| || ||||| Sbjct 26821 GGATTATTTCCCTCGTAACCATTAACCCCAGTCCATCCTCGACCATACATAGCAACACCA 26880 Query 20458 AGTGCAATTTTACTTTTTGGT---ACGTGTTGCGCGAGCAACGCTTCTACGGCACGATCT 20514 | | | || || ||| ||| || ||| || | ||| || || | || Sbjct 26881 ACTACGATCTT---TTTCGGTGACACACCTTGAGCTAACAAATATTTCACACCGAAGTCG 26937 Query 20515 GCGCAATAAGGTTCGTCGGGTTTCCAGGCGGGTGCAAACAATGCGGTTTGATGTCCCAGA 20574 | |||| || | || ||||| || |||||| |||| | ||||||||||||| | Sbjct 26938 GTTGTGTAAGTCTCTTTAGGATTCCATGCCGGTGCATACAACGGAGTTTGATGTCCCAAA 26997 Query 20575 TCCGTAGTGGACCAGGCTCCTTTGAAATCGTACGACATTAAGAATATGGTATCGAGGTAT 20634 | | ||||| ||||||||||||||||| ||| | ||| ||| || | |||| Sbjct 26998 GTATCATTTGACCATGCTCCTTTGAAATCGTAACTCATAACGAAAATGTGGTCCATGTAT 27057 Query 20635 TTTTGCGCTTCGGTGTAATCGACCACAGCAATCTTATCGTCGCCCGCGCTTATCGCGCTC 20694 | |||||||| | ||||||||| || ||| || || || || || || || Sbjct 27058 TGTTGCGCTTTTGCGTAATCGACAACCTGAATTTTGTCCCATCCAGCACTGATTGCTGAG 27117 Query 20695 GTCAACAGATAGTAACGATT-----GTGATGTATGCCGAGGG--CGTCGAGCATGCCGCG 20747 |||| | | ||| || || ||| ||| || || | || ||||| | || Sbjct 27118 GTCA---GTTCGTA-CGTTTTACCAGTG--GTA-GCAGATAAATCATCAAGCATTTCACG 27170 Query 20748 AAGTTCACGCAGCAGGATCGTGTACGTGGCTCGATCGCGTTCGGCGTCGCCGACATTGGG 20807 | ||| || || | ||| || | ||| ||| | | |||| | || Sbjct 27171 TAATTCTTCCATCAAACTAACGTAAACAGCACCATC---TTCTGGGCTTCCGAGGTCTGG 27227 Query 20808 GTTCGCGCCATTGCCGCCCGGAAACTCCCAATCAATGTCGACGCCATCAAAGAATTTCCA 20867 ||| || || || || || || |||||||| ||||| || || || |||||||||||||| Sbjct 27228 GTTAGCACCTTTACCACCAGGGAACTCCCAGTCAATATCAACACCGTCAAAGAATTTCCA 27287 Query 20868 CGTTTCTAGATACTCTTGGACCGAATCGATAAACGTTTGGCGCACGATCTTGTC-GTGCA 20926 ||| || | |||| || || || | ||| || ||| |||| || ||| | Sbjct 27288 GGTTAAAAGGAAATCTTTAACAGATTCTACAAATCGCTGTCGCTTACTCTTATCAGTGAA 27347 Query 20927 TATGGAAAAATGGGTCCGAAAGTGTCCAGCCCCCGATAGACGGTAACACTTTGAGATGCG 20986 | | | ||| || || | | ||||| || || || || ||||| | || | | | Sbjct 27348 GAAGAAGAAA-GGATCAGCTAAAGTCCACCCACCAATTGATGGTAAAATCTTCAAGTCTG 27406 Query 20987 GGTTCGCCAATTTCGCGGCCATAAGTTGGCCAAAGTTGCCTTTGTACGGTTCGTTCCATG 21046 | || || |||| | ||| | ||| ||||| |||||||| || ||||| ||||| | Sbjct 27407 GTTTAGCTTGTTTCAATGACATCAATTGACCAAAATTGCCTTTATAAGGTTCATTCCAGG 27466 Query 21047 CGCTGACACCTTTCTGGGGTTTCTGTATGGCCGCCCACGGATCGTGAATGGCCACCTTAA 21106 | | |||| | || |||||||||| || ||||| ||||| || |||| ||||||| Sbjct 27467 AGGATAGACCTCTTTGAGGTTTCTGTAAAGCAGCCCAAGGATCATGGATGGAAACCTTAA 27526 Query 21107 AGTCGGCACGGCCCGCGCACGAACGTTGCAACGCTTCGAAACTGCCCGGGACA-CTTTTG 21165 | || | || || ||| ||||| || | |||| ||||| ||| || ||||| Sbjct 27527 AATCTTCCCGACCACTGCATGAACGCTGTAGTGCTTGAAAACTTCCCTCGATTTCTTTTA 27586 Query 21166 AGCGCATCGTTGATGCCTTCGCCTCCGCACATGGGCACGAAACCGTACAACAAATGCGAC 21225 | | || || ||||| || || || || || || | ||||||||| | | ||| | Sbjct 27587 AACTG-TCATTAATGCCATCACCCCCACATATCGGTATGAAACCGTAAAGAAGATGTGTG 27645 Query 21226 AAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGGCGCGGATACACACCCCATTCGACA 21285 | || || | ||||| ||||||||| || | | || || ||||||||||| || Sbjct 27646 AGATTTGGAATCGGCACACGATCGACGGGGAATTTCCTGGGGTATACACCCCATTCAACG 27705 Query 21286 AAGTATGCTCCAATGATCTTGTCCGAGCGCTT-TTCGAAACGTTTATTGTTTTC 21338 ||||| ||||||| || ||| || || || || ||| |||| || ||||| Sbjct 27706 AAGTAAGCTCCAACGA-CTTTACCAGACGTTTGTTTGAATGGTTTGTTCTTTTC 27758 >seq219 Length=603346 Score = 134 bits (148), Expect = 1e-26 Identities = 478/739 (65%), Gaps = 6/739 (1%) Strand=Plus/Plus Query 153070 GGTTGACAACTTGAAATTCGCCCGACAATACACGTCTCAAAAACAAATTAC-TGTGAAAC 153128 ||||||| |||||||| || || ||||| || ||||| | | || ||| ||| Sbjct 377482 GGTTGACCACTTGAAACTCTCCAGACAAAACTCGTCTTTGGTAAATGTTTGATGTAAAA- 377540 Query 153129 GGTTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCC 153188 ||||||||||| || || || |||||||| ||||| | ||| || ||||| ||| Sbjct 377541 GGTTCAAACGATTCATTATTTCCTAGTATTTGAGCGGTGGAGGCAGTGGGCATTGGCGCT 377600 Query 153189 ACAAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGT-GACCAGTC 153247 | || | |||||||| | || || ||| || || |||| || | | ||| || Sbjct 377601 AATAGAAGGGAATTACGAAGACCATGCTTTGCAATTTTT-TCTTTAAGAGCAGCCCAATC 377659 Query 153248 CCATAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTT 153307 ||| | || ||| | ||||||| |||||| || | |||||||||||||| Sbjct 377660 CCAAAGATCTGTGGGTGTTTTGTTCCACATATCGTACTGTAGAATCCCTTGGCTAGCAGG 377719 Query 153308 GCTACCGGCAAACGTGCTATACGGCTCACTGTCAGACGCCAGTTTCA-AACTGGCATCGA 153366 || || | | ||||| || || | || || | ||| |||| || |||| Sbjct 377720 ACTTCCCTCGTAAGTGCTGTAAACACCA-TCTCTCTCGGCTAACTCACAACTTGCCTCGA 377778 Query 153367 GCGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCTCA 153426 |||| | | ||| | ||||| | || || | || ||||| | || || ||| Sbjct 377779 GCGCACCGTAATAGATCGTTTCAAATATTTGCTGATTAAGTAATATTGCCTTCTCACTCT 377838 Query 153427 CGTACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGG 153486 | ||||||| | || | ||||||||||| || || || |||| ||| || || |||| Sbjct 377839 CATACGGTAATCTCATAAGAACAAATGCATCCGCTAATCCCTGAACGCCGATACCAATGG 377898 Query 153487 GACGATGGCGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTGCGGTCGATAA 153546 | | || |||||| || ||||| || | |||||||| || ||| || |||| Sbjct 377899 GCCTGTGTTTCATATTCGAGTTTTTCGCCTCCGGTACAGGATAAAAGTTGACATCAATAA 377958 Query 153547 TTTTATTTAAACTAATCACGACATGTTTCACCACAGAATGCAACAGTTGAAAATCAAACG 153606 |||| || | | | ||| ||| || | || || ||||| || Sbjct 377959 TTTTGTTCAGATTTTGTGTAACAGTTTTAGTTACTTCTTTCAGTTTTTTGAAATCGAATT 378018 Query 153607 TTCCATTAATGATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGT 153666 || || | | | | || | || || || || | ||||| |||||| || | Sbjct 378019 TTTTGTTTTCAACAAACATATTTAGAGCTATTGAGGCGAGATTGCACACGGCAACCTCAT 378078 Query 153667 CGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAAT 153726 | | ||||| || ||||| | ||||||||| |||||||| || || || Sbjct 378079 CTTCCGATGTATATTCAACAATTTCAGTACACAAATTACTGCATTTGATAGTTCCAAGAT 378138 Query 153727 TACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTT 153786 | ||||||| ||||| | |||||| || || ||||| ||||||||||| || || |||| Sbjct 378139 TTTTTTGATTACTTTTTCTGTTACATGCATCTTTGTACAGCATGTATGGAGTACCAGTTT 378198 Query 153787 CGGCTTGAATTTCTATAAT 153805 || |||| ||| ||||| Sbjct 378199 CGACTTGCGCTTCAATAAT 378217 >seq221 Length=486136 Score = 113 bits (124), Expect = 4e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 |||||| ||||| ||||||||| |||||||||| || || |||||||| || |||||||| Sbjct 78643 GTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGGATACCTTCTTT 78702 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| |||||| ||||| | || | |||||| | || || || || | ||| | Sbjct 78703 GTCTTGGATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGACTTCTAGGGTGAT 78762 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || ||||| ||||| || || ||||| || |||||| Sbjct 78763 GGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCATA 78799 Score = 113 bits (124), Expect = 4e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 |||||| ||||| ||||||||| |||||||||| || || |||||||| || |||||||| Sbjct 78871 GTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGGATACCTTCTTT 78930 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| |||||| ||||| | || | |||||| | || || || || | ||| | Sbjct 78931 GTCTTGGATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGACTTCTAAGGTGAT 78990 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || ||||| ||||| || || ||||| || |||||| Sbjct 78991 GGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCATA 79027 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||||||| | |||| |||||||||||||||||||| |||||| Sbjct 79256 CCTCCGCGAAGACGCAAAACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAA 79315 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| || | ||||| || ||| |||||| ||||||||||| || || Sbjct 79316 AGAGTACGTCCGTCCTCCAATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGTGGG 79375 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || |||||||| ||| |||| | |||| | | ||| | || || | || || || Sbjct 79376 ATTCCCTCTTTGTC-TTGAATTTTGGCTTTAACATTTTCAATAGTATCCGAAGGTTCGAC 79434 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || || | ||||||||| || || ||||| Sbjct 79435 TTCCAAAGTTATGGTCTTTCCAGTAAGCGTTTTTACAAAAATCTGCAT 79482 >seq131 Length=856804 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| || | | |||||||| | || || || ||||||||||||||||| | Sbjct 307885 CCCCCTCGCAATCTTAGTACTAAGTGCAGGGTTGATTCCTTTTGAATGTTATAATCAGAC 307944 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || | ||||| | ||| || || ||| |||| || | ||||| || || || Sbjct 307945 AGGGTGCGTCCA-TCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGG 308003 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || ||| | | || | ||||||| ||| || || Sbjct 308004 AATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAAC 308063 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||| || || || || |||||||| || |||||||| Sbjct 308064 TTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308111 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTC 139614 || ||||| | || || || ||||||||||| ||||| || |||| || | ||||| Sbjct 308131 ACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCA-TCTTC 308189 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | ||| || || ||| |||| || | ||||| || || || || ||||| ||||| Sbjct 308190 TAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTG 308249 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || ||| | | || | ||||||| ||| || || || | || | ||| || Sbjct 308250 GATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTT 308309 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || |||||||| || |||||||| Sbjct 308310 TCCAGTTAATGTTTTTACAAAGATTTGCAT 308339 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTC 139614 || ||||| | || || || ||||||||||| ||||| || |||| || | ||||| Sbjct 308359 ACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCA-TCTTC 308417 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | ||| || || ||| |||| || | ||||| || || || || ||||| ||||| Sbjct 308418 TAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTG 308477 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || ||| | | || | ||||||| ||| || || || | || | ||| || Sbjct 308478 GATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTT 308537 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || |||||||| || |||||||| Sbjct 308538 TCCAGTTAATGTTTTTACAAAGATTTGCAT 308567 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTC 139614 || ||||| | || || || ||||||||||| ||||| || |||| || | ||||| Sbjct 308587 ACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCA-TCTTC 308645 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | ||| || || ||| |||| || | ||||| || || || || ||||| ||||| Sbjct 308646 TAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTG 308705 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || ||| | | || | ||||||| ||| || || || | || | ||| || Sbjct 308706 GATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTT 308765 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || |||||||| || |||||||| Sbjct 308766 TCCAGTTAATGTTTTTACAAAGATTTGCAT 308795 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTC 139614 || ||||| | || || || ||||||||||| ||||| || |||| || | ||||| Sbjct 308815 ACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCA-TCTTC 308873 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | ||| || || ||| |||| || | ||||| || || || || ||||| ||||| Sbjct 308874 TAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTG 308933 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 |||||| ||| | | || | ||||||| ||| || || || | || | ||| || Sbjct 308934 GATTTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTT 308993 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| || || ||||| || || || ||||| Sbjct 308994 GCCAGTTAAGGTTTTCACAAAAATCTGCAT 309023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496030546684000