Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq219 520 1e-142 seq149 131 2e-25 >seq219 Length=603346 Score = 520 bits (576), Expect = 1e-142 Identities = 1036/1509 (69%), Gaps = 34/1509 (2%) Strand=Plus/Plus Query 78685 ACCACTGGTGGCTTTATCTT-ATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGG 78743 |||| ||||| |||| ||| | ||| || | |||||||| || | | || || || Sbjct 377111 ACCATTGGTGATTTTAACTTTAGACTTATCTACGGTGAATTGTATAGCATTGGCAGCTGG 377170 Query 78744 TTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCAT 78803 ||| || |||| ||||||||| || ||||| ||||| | ||||| |||| || || || Sbjct 377171 TTTTGTTCGTAAATAGTACATGCCAGTTTTCAGACCCATTTTCCATGCGTAAAAGTGTAT 377230 Query 78804 ACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATC 78863 |||| ||| |||| | || ||||| | ||| || || | || |||||||| || Sbjct 377231 GGATGTTAATTTTCCATAATTTGGTTCTGCGACATGTATGTTAAATGACTGACTTTGGTC 377290 Query 78864 GATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAAT 78923 || |||||||| ||||| |||||||||| || | ||||| | ||| ||||| | Sbjct 377291 TATAAAGGCTCCTCTGTCCGCAGCCATTTGAATTGTTGTCTTGACGGAAATCTCCCATAC 377350 Query 78924 AGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG-GTTTGTAT--TCTGAATGGATCCAC 78979 |||||||| | || || | | |||| || | | || || |||||||||| ||| Sbjct 377351 TGTTTTATACAGATCTCTGA-TGTCTTTGGGTATTGCTTCAATGTTCTGAATGGAACCAT 377409 Query 78980 CATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCG-GTTAAAACT 79038 | ||||| |||||| || ||||||| ||||| | | || | || ||| || Sbjct 377410 TGTTATGTATAATGAGATTCTTCATTTCTTCATCCCATAGATC-CGCTTGAGTCAAATCT 377468 Query 79039 CTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATA 79098 | | ||||| | || || |||||||| ||||||||||| |||| | |||||| Sbjct 377469 GTTAAAAGATGATGGTTGACCACTTGAAACTCTCCAGACAAAACTCGTCTTTGGTAAATG 377528 Query 79099 TTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTT 79158 || ||| | ||||| | ||||||||||||||| | |||||||| || || || || Sbjct 377529 TTTGATGTAAAAGGTTCAAACGATTCATTATTTCCTAGTATTTGAGCGGTGGAGGCAGTG 377588 Query 79159 GGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTG--ATTTTATCTTTTA 79216 ||||| || || | | | ||| | |||||| ||| | || ||||| ||||| | Sbjct 377589 GGCATTGGCGCTAATAGAAGGGAATTACGAAGACC--ATGCTTTGCAATTTTTTCTTTAA 377646 Query 79217 GAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATAC 79276 ||| |||||||||||||||| | || ||||| | ||| || |||||||| | Sbjct 377647 GAGCAGCCCAATCCCAAAGATCTGTGGGTGTTTTGTTCCACATATCGTACTGTAGAATCC 377706 Query 79277 CGTTACTAGCGTATGA--TCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTC 79334 | | ||||| | || ||| ||| || ||| || || | |||||||| || Sbjct 377707 CTTGGCTAGC--AGGACTTCCCTCGTAAGTGCTGTAAACACCATCTCTCTCGGCTAACTC 377764 Query 79335 ACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAG--ATCT 79392 |||||| ||||| | || |||||||| || ||||| || || | || ||| || || | Sbjct 377765 ACAACTTGCCTCGAGCGCACCGTAATAGATCGTTTCAAATATTTGCTGATTAAGTAATAT 377824 Query 79393 TGTGCTTCTAGGCTATCAAATGGATAATTTAAGA-GAATAAACGCGTCTGCTAATCCTTG 79451 || ||||| || ||| | || |||| | | | ||| ||| || || |||||||| || Sbjct 377825 TGC-CTTCTCA-CTCTCATACGG-TAATCTCATAAGAACAAATGCATCCGCTAATCCCTG 377881 Query 79452 AACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATA 79511 ||| || ||||| || || || ||| || |||| || ||| || || || | |||||| Sbjct 377882 AACGCCGATACCAATGGGCCTGTGTTTCATATTCGAGTTTTTCGCCTCCGGTACAGGATA 377941 Query 79512 ATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACC-ACATCCTTTA 79570 | | || | ||| |||||||| || ||||| || || | ||| | || || || | Sbjct 377942 AAAGTTGACATCAATAATTTTGTTCAGATTT-TGTGTAACAGTTTTAGTTACTTCTTTCA 378000 Query 79571 GTTTGAGAAAATCAAATCGTCCATCTATTACAAACATGTTCAACGCGACAGATGCCAGAT 79630 |||| ||||| ||| | | | |||||||| || | || | || || |||| Sbjct 378001 GTTTTTTGAAATCGAATTTTTTGTTTTCAACAAACATATTTAGAGCTATTGAGGCGAGAT 378060 Query 79631 TACAAACGGCTACCTCATTAGCATCCGC---ATATTGTATTATTTCAGTGCAGAGGTTAC 79687 | || ||||| ||||||| | |||| ||||| | |||||||| || | |||| Sbjct 378061 TGCACACGGCAACCTCAT---CTTCCGATGTATATTCAACAATTTCAGTACACAAATTAC 378117 Query 79688 TACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 79747 | || || || ||||| | ||||| ||||||||| ||| ||||||| ||||| || || | Sbjct 378118 TGCATTTGATAGTTCCAAGATTTTTTTGATTACTTTTTCTGTTACATGCATCTTTGTACA 378177 Query 79748 GAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAG 79807 | ||| | |||||||||||||| | || | ||| ||||| |||||||| | | ||| Sbjct 378178 GCATGTATGGAGTACCAGTTTCGACTTGCGCTTCAATAATGGCTTTCCATAATATCTGAG 378237 Query 79808 CCTTTATTATAGACT--TGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAA 79865 | || | | || |||| |||||| ||| |||| ||| || ||| || Sbjct 378238 CGCGTA--CTTGCCTGACAAATCTGTTTTCTTGTTCATATTTCTCATACAACGCTTCAAA 378295 Query 79866 CTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTC 79925 || || || || ||| | | || ||||| | | |||||||||| ||| | Sbjct 378296 TTCTTCACCGTAACAATCATAAAGCCCTGGACAGTTATGGGGACACATCAGACTCCAATT 378355 Query 79926 TCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATC 79985 | ||| || || | ||||| || | ||| || ||||| ||||| ||| | || Sbjct 378356 TTCATTTCTCTCAACCCTCTTCATGAACAAATCTGGTATCCATAGAGCATAAAACAATTC 378415 Query 79986 TCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 80045 ||||| || || || |||||||| ||||| || | ||| | ||| | | ||||| Sbjct 378416 TCTGGCCCTCACTTCTTCCTTTCCTGTGTTCTTCTTTAAATCCAAAAACTCGAAGATATC 378475 Query 80046 AGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATC 80105 |||||||||||| |||| || ||||| | ||||||| ||||| || || || ||||| Sbjct 378476 AGAATGCCACGGCTCCACATAGATGGCGAATGCTCCCGGACGTTTATTGCCCCCTTGATC 378535 Query 80106 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACC 80165 | ||||| || ||||||||||| || |||||||| |||| | ||||| || |||| Sbjct 378536 AACATATCTTGCTGTGTTATTATACACCCTCAACATCGGAACGAGTCCATTTGAAATACC 378595 Query 80166 ATTGGTCCC 80174 ||| || || Sbjct 378596 ATTTGTACC 378604 >seq149 Length=636072 Score = 131 bits (144), Expect = 2e-25 Identities = 141/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 50225 TAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCT 50284 ||| ||| ||||| |||| ||| |||||||||||| |||| ||||| || || |||| Sbjct 239134 TAATATATGTATCAATCAGAAGTGAATACATTTCCGAGTGAACATTTTCCATAGCAATCT 239075 Query 50285 GAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTA 50344 | || || ||||| ||||| ||||| || | ||| ||||| | || ||||| | | Sbjct 239074 GGAAACCATAGAAGCATCTCGCCTCAGTCACCTGAACTTCCTGGGAGAAGCGTTCTACGA 239015 Query 50345 AATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 50404 ||| ||||| ||||| || || || |||||||||||||||||||| || ||||| | Sbjct 239014 GATTCTCATTTACTATACCATCTGATGCCGCAAAAAACGCCAATACATGCTTAATAAAGT 238955 Query 50405 GTTTTTC 50411 || |||| Sbjct 238954 GTCTTTC 238948 Score = 95.1 bits (104), Expect = 2e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 50446 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 50505 ||||||| || |||||||| || ||||| || || ||||||||||| || ||||| | | Sbjct 238709 TTAGATAAGTCAACTTCTTCAACAGTCCAGAAAGAAGCCTCTGCCTTCTTGTACATTTGC 238650 Query 50506 CAGATGTCATGATATTGGATTGGGAAAATAACAAATC 50542 || || ||| |||| ||||| ||||| |||||||||| Sbjct 238649 CATATATCAGGATACTGGATGGGGAATATAACAAATC 238613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718220361747800