Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq64 114 1e-20 seq221 109 4e-19 seq131 86.0 5e-12 >seq64 Length=1946208 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 42880 TCGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCG 42939 || ||||| | ||||| ||||| | ||| | || |||||||| | |||||| ||| Sbjct 785698 TCACCTCCTCTAAGTCTCAACACAAGATGCAAGGTAGATTCCTTTTGAATATTGTAGTCG 785757 Query 42940 GACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCC 42999 || || ||||| | || ||||||||||| || || || ||||||||||| ||||| | Sbjct 785758 GATAAGGTACGACCATCTTCCAATTGTTTTCCAGCGAATATCAATCGCTGCTGATCTGGT 785817 Query 43000 GGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCG 43059 || | |||||| || || |||| | || || | | | ||||| ||||| Sbjct 785818 GGAATACCTTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCAGAGGCCTCA 785877 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || |||| || || ||||| || ||||| || || || ||||| |||||||| Sbjct 785878 ACCTCTAGGGTAATGGTTTTACCCGTTAGGGTCTTAACGAAAATCTGCATTTT 785930 >seq221 Length=486136 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || | || || | ||| | ||| ||| ||||| | ||||||||||| Sbjct 79256 CCTCCGCGAAGACGCAAAACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAA 79315 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| |||| ||||||||||| || ||||| |||||||| || ||||| | || Sbjct 79316 AGAGTACGTCCGTCCTCCAATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGTGGG 79375 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || ||||| || || |||| || | ||| || || || ||||| Sbjct 79376 ATTCCCTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATAGTATCCGAAGGTTCGACT 79435 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | ||||| || ||||| || || ||||| |||||||| |||||||| Sbjct 79436 TCCAAAGTTATGGTCTTTCCAGTAAGCGTTTTTACAAAAATCTGCATTTT 79485 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | || || | ||||| || ||||| || | ||||| ||||| Sbjct 79028 CCACCACGCAGACGTAGTACGAGATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCGGAG 79087 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || || |||||||| || || |||||||| || |||||||| | || Sbjct 79088 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGGGGG 79147 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || ||| | || || | ||| || || || ||| || Sbjct 79148 ATGCCTTCCTTGTCTTGGATTTTAGCCTTCACGTTTTCAATAGTATCAGAAGGCTCTACC 79207 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| |||||||||||| || || || ||||| ||||| || ||||| Sbjct 79208 TCTAACGTTATAGTTTTACCCGTAAGGGTTTTAACAAAGATCTGCAT 79254 >seq131 Length=856804 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || ||||| ||||| || | || |||||||| | |||||||| ||| Sbjct 308113 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308172 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| | || || || || ||||||||||| || | || ||| || || | || Sbjct 308173 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308232 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| |||| || | | | |||||| | || || Sbjct 308233 ATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308292 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||| |||| ||||| ||||| |||||||| Sbjct 308293 TCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308339 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || ||||| ||||| || | || |||||||| | |||||||| ||| Sbjct 308341 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308400 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| | || || || || ||||||||||| || | || ||| || || | || Sbjct 308401 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308460 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| |||| || | | | |||||| | || || Sbjct 308461 ATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308520 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||| |||| ||||| ||||| |||||||| Sbjct 308521 TCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308567 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || ||||| ||||| || | || |||||||| | |||||||| ||| Sbjct 308569 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308628 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| | || || || || ||||||||||| || | || ||| || || | || Sbjct 308629 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308688 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| |||| || | | | |||||| | || || Sbjct 308689 ATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308748 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||| |||| ||||| ||||| |||||||| Sbjct 308749 TCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308795 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || ||||| ||||| || | || |||||||| | |||||||| ||| Sbjct 308797 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308856 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| | || || || || ||||||||||| || | || ||| || || | || Sbjct 308857 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308916 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || ||| |||| || | | | |||||| | || || Sbjct 308917 ATTCCTTCCTTGTCCTGGATTTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308976 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || ||||| || |||| |||||||||||||| ||||| || Sbjct 308977 TCCAAAGTGATCGTTTTGCCAGTTAAGGTTTTCACAAAAATCTGCATCTT 309026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381344524352910