Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq219 450 2e-121 seq149 125 1e-23 >seq219 Length=603346 Score = 450 bits (498), Expect = 2e-121 Identities = 971/1443 (67%), Gaps = 21/1443 (1%) Strand=Plus/Plus Query 70827 TTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCAT 70886 ||| || |||| |||||||||||| ||||| ||||| | ||||| ||||||| || || Sbjct 377171 TTTTGTTCGTAAATAGTACATGCCAGTTTTCAGACCCATTTTCCATGCGTAAAAGTGTAT 377230 Query 70887 ACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATC 70946 |||| ||| ||| | || || || | || || || | ||||||||||| || Sbjct 377231 GGATGTTAATTTTCCATAATTTGGTTCTGCGACATGTATGTTAAATGACTGACTTTGGTC 377290 Query 70947 GATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAAT 71006 || |||||||| ||||| |||||||||| || | ||||| | ||| ||||| | Sbjct 377291 TATAAAGGCTCCTCTGTCCGCAGCCATTTGAATTGTTGTCTTGACGGAAATCTCCCATAC 377350 Query 71007 AGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG-GTTTGTAT--TCTGAATGGATCCAC 71062 |||||||| | || || | | |||| || | | || || |||||||||| ||| Sbjct 377351 TGTTTTATACAGATCTCTGA-TGTCTTTGGGTATTGCTTCAATGTTCTGAATGGAACCAT 377409 Query 71063 CATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCG-GTTAAAACT 71121 | ||||| ||| || || ||||||| ||||| | | || | || ||| || Sbjct 377410 TGTTATGTATAATGAGATTCTTCATTTCTTCATCCCATAGATC-CGCTTGAGTCAAATCT 377468 Query 71122 CTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATA 71181 | | |||||| | || || |||||||| ||||||||||| |||| | |||||| Sbjct 377469 GTTAAAAGATGATGGTTGACCACTTGAAACTCTCCAGACAAAACTCGTCTTTGGTAAATG 377528 Query 71182 TTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTC 71241 || ||| | ||||| | || ||||||||||| | |||||||| || || ||||| Sbjct 377529 TTTGATGTAAAAGGTTCAAACGATTCATTATTTCCTAGTATTTGAGCGGTGGAGGCAGTG 377588 Query 71242 GGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGA 71301 ||||| || || | | || ||| | ||||||||| | ||||| ||||| ||| Sbjct 377589 GGCATTGGCGCTAATAGAAGGGAATTACGAAGACCATGCTTTGCAATTTTTTCTTTAAGA 377648 Query 71302 GATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCG 71361 | |||||| ||||||||| | ||| || || Sbjct 377649 GCAGCCCAATCCCAAAGATCTGTGGGTGTTTTGTTCCACATATCGTACTGTAGAATCCCT 377708 Query 71362 TTACTAGCGTATGA--TCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCAC 71419 | ||||| | || ||| | || || ||| || ||| | ||||||| |||| Sbjct 377709 TGGCTAGC--AGGACTTCCCTCGTAAGTGCTGTAAACACCATCTCTCTCGGCTAACTCAC 377766 Query 71420 AACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTG 71479 |||| ||||| | || || ||||| || ||||| || || | || ||| || | || Sbjct 377767 AACTTGCCTCGAGCGCACCGTAATAGATCGTTTCAAATATTTGCTGATTAAGTAATATTG 377826 Query 71480 CTTCCGGGCTATCAAATGGATAATTTAAGA-GAATAAACGCGTCTGCTAATCCTTGAACG 71538 | | | || ||| | || |||| | | | ||| ||| || || |||||||| |||||| Sbjct 377827 CCTTCTCACTCTCATACGG-TAATCTCATAAGAACAAATGCATCCGCTAATCCCTGAACG 377885 Query 71539 CCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAA 71598 || ||||| || || |||||| || |||| || ||| || || || | ||||||| | Sbjct 377886 CCGATACCAATGGGCCTGTGTTTCATATTCGAGTTTTTCGCCTCCGGTACAGGATAAAAG 377945 Query 71599 TTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACC-ACATCCTTTAGTTT 71657 || | ||| |||||||| || |||||| || || | ||| | || || || ||||| Sbjct 377946 TTGACATCAATAATTTTGTTCAGATTT-TGTGTAACAGTTTTAGTTACTTCTTTCAGTTT 378004 Query 71658 GAGAAAATCAAATCTCCCATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACA 71717 ||||| ||| | | | ||||||| || | || | || || ||||| || Sbjct 378005 TTTGAAATCGAATTTTTTGTTTTCAACAAACATATTTAGAGCTATTGAGGCGAGATTGCA 378064 Query 71718 AACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTT 71777 ||||| ||||||| | | ||||| | ||||||||| || | |||||| || || Sbjct 378065 CACGGCAACCTCATCTTCCGATGTATATTCAACAATTTCAGTACACAAATTACTGCATTT 378124 Query 71778 GATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAA 71837 ||| ||||| | ||||| ||||||||| ||| ||||||| ||||| || || || || | Sbjct 378125 GATAGTTCCAAGATTTTTTTGATTACTTTTTCTGTTACATGCATCTTTGTACAGCATGTA 378184 Query 71838 CGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT 71897 |||||||||||||| | || | ||| ||||| |||||||| | | |||| || Sbjct 378185 TGGAGTACCAGTTTCGACTTGCGCTTCAATAATGGCTTTCCATAATATCTGAGCGCGTAC 378244 Query 71898 TATATTCTTG---TATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTC 71954 | | | || |||| |||||| ||| |||| ||| || ||| || || || Sbjct 378245 T---TGCCTGACAAATCTGTTTTCTTGTTCATATTTCTCATACAACGCTTCAAATTCTTC 378301 Query 71955 TCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATC 72014 || || || | | || ||||| | || |||||||||| ||| | | ||| Sbjct 378302 ACCGTAACAATCATAAAGCCCTGGACAGTTATGGGGACACATCAGACTCCAATTTTCATT 378361 Query 72015 ATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 72074 | || | ||||| || | ||| || ||||| ||||| ||| | ||||||| Sbjct 378362 TCTCTCAACCCTCTTCATGAACAAATCTGGTATCCATAGAGCATAAAACAATTCTCTGGC 378421 Query 72075 TCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 72134 || || || |||||||| ||||| || | ||| | ||| | | ||||||||||| Sbjct 378422 CCTCACTTCTTCCTTTCCTGTGTTCTTCTTTAAATCCAAAAACTCGAAGATATCAGAATG 378481 Query 72135 CCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTA 72194 |||||| |||| || ||||| | ||||||| ||||| || || || ||||| | || Sbjct 378482 CCACGGCTCCACATAGATGGCGAATGCTCCCGGACGTTTATTGCCCCCTTGATCAACATA 378541 Query 72195 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGT 72254 ||| || ||||||||||| || |||||||| |||| | ||||| || |||||| || Sbjct 378542 TCTTGCTGTGTTATTATACACCCTCAACATCGGAACGAGTCCATTTGAAATACCATTTGT 378601 Query 72255 CCC 72257 || Sbjct 378602 ACC 378604 >seq149 Length=636072 Score = 125 bits (138), Expect = 1e-23 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 42330 TAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCT 42389 ||| ||||||||| |||| ||| ||||||||| || |||| ||||| || || |||| Sbjct 239134 TAATATATGTATCAATCAGAAGTGAATACATTTCCGAGTGAACATTTTCCATAGCAATCT 239075 Query 42390 GAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTA 42449 | || || ||||| ||||| ||||| || ||||| ||||| | || ||||| | | Sbjct 239074 GGAAACCATAGAAGCATCTCGCCTCAGTCACCTGAACTTCCTGGGAGAAGCGTTCTACGA 239015 Query 42450 AATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 42509 ||| || || ||||| || || || |||||||||||||||||||| || ||||| | Sbjct 239014 GATTCTCATTTACTATACCATCTGATGCCGCAAAAAACGCCAATACATGCTTAATAAAGT 238955 Query 42510 ATTTTTC 42516 | |||| Sbjct 238954 GTCTTTC 238948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671093940050200