Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq219 156 6e-33 seq149 86.0 9e-12 seq66 86.0 9e-12 seq212 84.2 3e-11 >seq219 Length=603346 Score = 156 bits (172), Expect = 6e-33 Identities = 320/470 (68%), Gaps = 18/470 (4%) Strand=Plus/Minus Query 97800 GCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCTGAATCTTTTGAACCG 97859 || || |||||||| || |||| | ||| | | || ||| |||||| |||||||| Sbjct 377599 GCGCCAATGCCCACTGCCTCCACCGCTCAAATACTAGGAAATAATGAATCGTTTGAACCT 377540 Query 97860 TTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTTCAATTGACCAACGTG 97919 || || |||||||| ||||| ||||| |||||||||||||||| || |||| Sbjct 377539 TTTACATCAAACATTTACCAAAGACGAGTTTTGTCTGGAGAGTTTCAAGTGGTCAACCAT 377480 Query 97920 CACTTGGTTCGAGACTTGG----AACGGCTCAATCTGTGGAACGATGACATGGCCCAGTT 97975 || | | ||| ||| | ||| |||| ||| | || || ||| | | Sbjct 377479 CATCTTTTAACAGATTTGACTCAAGCGG----ATCTATGGGATGAAGAAATGAAGAATCT 377424 Query 97976 GATCATGTACAACAATGGGTCCATTCAAAACATT--ACCATCATCCCGGAAGAGTTGCGC 98033 || || | |||||||| |||||||| |||||| | || || || |||| | | Sbjct 377423 CATTATACATAACAATGGTTCCATTCAGAACATTGAAGCA--ATACCCAAAGACAT---C 377369 Query 98034 AGA-ATCT--ACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCC 98090 ||| |||| | || || || ||||||||| | |||||| || | |||||||| Sbjct 377368 AGAGATCTGTATAAAACAGTATGGGAGATTTCCGTCAAGACAACAATTCAAATGGCTGCG 377309 Query 98091 GACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACC 98150 |||||||| | || || ||||| ||||| || || || | | || || || || | Sbjct 377308 GACAGAGGAGCCTTTATAGACCAAAGTCAGTCATTTAACATACATGTCGCAGAACCAAAT 377249 Query 98151 TACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATG 98210 || | | || || |||||||||||||||||||| | ||| || || || |||||| Sbjct 377248 TATGGAAAATTAACATCCATACACTTTTACGCATGGAAAATGGGTCTGAAAACTGGCATG 377189 Query 98211 TACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGA 98260 |||||| | ||||||| | || ||||||| |||| ||| || || || Sbjct 377188 TACTATTTACGAACAAAACCAGCTGCCAATGCTATACAATTCACCGTAGA 377139 Score = 89.7 bits (98), Expect = 8e-13 Identities = 319/496 (64%), Gaps = 2/496 (0%) Strand=Plus/Minus Query 96824 TGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAGGGCGG 96883 ||| || || || ||| | || |||| ||| | || |||| ||| || || || Sbjct 378584 TGGACTCGTTCCGATGTTGAGGGTGTATAATAACACAGCAAGATATGTTGATCAAGGGGG 378525 Query 96884 CAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGA 96943 ||||||||| || || || | ||| |||| |||| || ||||| | || | || || Sbjct 378524 CAATAAACGTCCGGGAGCATTCGCCATCTATGTGGAGCCGTGGCATTCTGATATCTTCGA 378465 Query 96944 CTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTA 97003 ||| | || | || ||| | || ||||| | | ||||| || |||||||| Sbjct 378464 GTTTTTGGATTTAAAGAAGAACACAGGAAAGGAAGAAGTGAGGGCCAGAGAATTGTTTTA 378405 Query 97004 TGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCT 97063 ||| || ||| | |||||||||||||||||| | || | || | ||||| || Sbjct 378404 TGCTCTATGGATACCAGATTTGTTCATGAAGAGGGTTGAGAGAAATGAAAATTGGAGTCT 378345 Query 97064 AATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAA 97123 ||||| ||| | | || || || | ||||| | || ||||| ||||| || Sbjct 378344 GATGTGTCCCCATAACTGTCCAGGGCTTTATGATTGTTACGGTGAAGAATTTGAAGCGTT 378285 Query 97124 GTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGA-ACTGT 97182 ||| | || || ||||| | ||| || || | ||| || | ||| | | | Sbjct 378284 GTATGAGAAATATGAACAAGAAAACAGATTTGTCAGGCAAGTACGCGCTC-AGATATTAT 378226 Query 97183 GGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATA 97242 |||| ||||| | || || || || ||||| ||||| ||||| || ||||| ||| Sbjct 378225 GGAAAGCCATTATTGAAGCGCAAGTCGAAACTGGTACTCCATACATGCTGTACAAAGATG 378166 Query 97243 CCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCA 97302 | || | || || || ||| | | || || ||||| || ||| |||| | Sbjct 378165 CATGTAACAGAAAAAGTAATCAAAAAAATCTTGGAACTATCAAATGCAGTAATTTGTGTA 378106 Query 97303 CGGAAATTGTAGAGTA 97318 | |||||||| || || Sbjct 378105 CTGAAATTGTTGAATA 378090 >seq149 Length=636072 Score = 86.0 bits (94), Expect = 9e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 125784 TACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAAC 125843 |||||| | |||||||| ||||| ||||||| | || || || ||||||||||| ||| Sbjct 239842 TACAACACAAAGAATCCTTTTGACTTCATGAACTTAATTTCCCTGGAGGGTAAGACGAAC 239901 Query 125844 TTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || || |||||||||||| | |||||| Sbjct 239902 TTCTTTGAGAAGAAGGTCGGGGAGTAC 239928 >seq66 Length=711337 Score = 86.0 bits (94), Expect = 9e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 49960 GACTGTGTCTACATTTCATCAGTGGAACGGTGTAGCCAGTCATGTGGTGCCCTTTATATT 50019 ||| ||||| |||||||||||||||||||| |||| |||| |||||||| | | | Sbjct 66435 GACAGTGTCAACATTTCATCAGTGGAACGGCATAGCTGGTCACGTGGTGCCGCTGCTGCT 66494 Query 50020 GGCCTTTTTCCTAGGATCCTATAGTGATAGGCGCGGTAGAAAGATTGTACTCGTATGTGG 50079 ||| || ||||| || || || || || | |||||| || ||| | || | | || Sbjct 66495 GGCGTTCTTCCTCGGCTCGTACAGCGACAAGCGCGGCAGGAAGGTGGTGTTGCTGGCAGG 66554 Query 50080 ACTCGTAGGTAAACTCTTTTTCTCGGCAATGCTAACCGTAAA 50121 || |||| ||||||| ||||| ||| ||||||| || Sbjct 66555 CCTGTTAGGCAAACTCTACTTCTCTATCATGATAACCGTGAA 66596 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 50926 AGGCGTAGCCTATGCCTTTCTGTCGGTGATGGAGAATGCCGTTGGAATGTTTGCTGCGGT 50985 ||||||||| | || ||||| || ||||||||||||||||||| |||||| || | || Sbjct 68996 AGGCGTAGCGTTCGCTTTTCTATCTGTGATGGAGAATGCCGTTGCAATGTTCGCGTCCGT 69055 Query 50986 GGCGTACTCTCAGCTCTACAAAAACACTCTGGACAC 51021 | ||||| ||||| |||||| ||| ||||||| Sbjct 69056 GCTTTACTCGCAGCTATACAAAGCCACCTTGGACAC 69091 >seq212 Length=884508 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 50926 AGGCGTAGCCTATGCCTTTCTGTCGGTGATGGAGAATGCCGTTGGAATGTTTGCTGCGGT 50985 ||||||||| | || ||||| || ||||||||||||||||||| |||||| || | || Sbjct 295904 AGGCGTAGCGTTCGCTTTTCTATCTGTGATGGAGAATGCCGTTGCAATGTTCGCGTCCGT 295963 Query 50986 GGCGTACTCTCAGCTCTACAAAAACACTCTGGACAC 51021 | ||||| ||||| |||||| ||| ||||||| Sbjct 295964 GCTTTACTCGCAGCTATACAAAGCCACCTTGGACAC 295999 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 50926 AGGCGTAGCCTATGCCTTTCTGTCGGTGATGGAGAATGCCGTTGGAATGTTTGCTGCGGT 50985 ||||||||| | || ||||| || ||||||||||||||||||| |||||| || | || Sbjct 299900 AGGCGTAGCGTTCGCTTTTCTATCTGTGATGGAGAATGCCGTTGCAATGTTCGCGTCCGT 299841 Query 50986 GGCGTACTCTCAGCTCTACAAAAACACTCTGGACAC 51021 | ||||| ||||| |||||| ||| ||||||| Sbjct 299840 GCTTTACTCGCAGCTATACAAAGCCACCTTGGACAC 299805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741009224820200