Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq221 138 8e-28 seq64 118 8e-22 seq131 98.7 7e-16 >seq221 Length=486136 Score = 138 bits (152), Expect = 8e-28 Identities = 162/218 (74%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| | |||||| || || |||||||| |||||||||||| ||| | | |||| Sbjct 79271 AAAACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAAAGAGTACGTCCGTCC 79330 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || |||||||| || || | ||||| ||||| || || ||| ||||| |||||||| Sbjct 79331 TCCAATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCCTCTTTGTCT 79390 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||||| || ||| |||| || ||||| | ||| || || || || ||||| Sbjct 79391 TGAATTTTGGCTTTAACATTTTCAATAGTATCCGAAGGTTCGACTTCCAAAGTTATGGTC 79450 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369 || || || || |||||||||||||| ||||| ||||| Sbjct 79451 TTTCCAGTAAGCGTTTTTACAAAAATCTGCAT-TTTGA 79487 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | || | || || | ||| || || || || || || |||||||| ||| Sbjct 79028 CCACCACGCAGACGTAGTACGAGATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCGGAG 79087 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | |||||||||||||| |||||| | |||||||||||||| || || Sbjct 79088 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGGGGG 79147 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| ||||| ||| || |||| || ||||| | ||||| Sbjct 79148 ATGCCTTCCTTGTCTTGGATTTTAGCCTTCACGTTTTCAATAGTATCAGAAGGCTCTACC 79207 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || || |||||||| || || ||||| ||||| || |||||| Sbjct 79208 TCTAACGTTATAGTTTTACCCGTAAGGGTTTTAACAAAGATCTGCATA 79255 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | ||||| || || | ||| || || || || || || |||||||| || Sbjct 78800 CCACCACGCAATCGTAGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGAA 78859 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | ||||||| | || || ||||| | |||| ||| ||||||||| || Sbjct 78860 AGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGG 78919 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||||||||| ||||| ||| |||||| | || || || || | ||| || Sbjct 78920 ATACCTTCTTTGTCTTGGATTTTCGCT-TTTACATTCTCAATTGTGTCTGAAGGTTCGAC 78978 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||||| |||||||| || |||| || || || || || |||||| Sbjct 78979 TTCTAAGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCATA 79027 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | ||||| || || | ||| || || || || || || |||||||| || Sbjct 78572 CCACCACGCAATCGTAGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGAA 78631 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | ||||||| | || || ||||| | |||| ||| ||||||||| || Sbjct 78632 AGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGG 78691 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||||||||| ||||| ||| |||||| | || || || || | ||| || Sbjct 78692 ATACCTTCTTTGTCTTGGATTTTCGCT-TTTACATTCTCAATTGTGTCTGAAGGTTCGAC 78750 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| ||| |||||||| || |||| || || || || || |||||| Sbjct 78751 TTCTAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCATA 78799 >seq64 Length=1946208 Score = 118 bits (130), Expect = 8e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| | ||| || || | ||| | ||| || || ||||| || ||||| ||| | Sbjct 785701 CCTCCTCTAAGTCTCAACACAAGATGCAAGGTAGATTCCTTTTGAATATTGTAGTCGGAT 785760 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||| |||||||| |||||| ||||||| || || || || |||| Sbjct 785761 AAGGTACGACCATCTTCCAATTGTTTTCCAGCGAATATCAATCGCTGCTGATCTGGTGGA 785820 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| || ||| ||||||| | || ||||| || || || Sbjct 785821 ATACCTTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCAGAGGCCTCAACC 785880 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 |||| ||||||||||||||| || || || || || ||||| ||||| || Sbjct 785881 TCTAGGGTAATGGTTTTACCCGTTAGGGTCTTAACGAAAATCTGCATTTT 785930 >seq131 Length=856804 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||||||||| || || || ||||| || || ||||| ||||||||||| Sbjct 308113 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308172 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | |||||||| || ||||| || | || | | || ||||| ||| Sbjct 308173 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308232 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| ||||| || || ||| || ||| | || || || ||| ||| || Sbjct 308233 ATTCCTTCCTTGTCCTGGATCTTAGCT-TTAACATTCTCGATCGTGTCGGAGGGTTCAAC 308291 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| || || | ||||||||||| |||||||| Sbjct 308292 TTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308339 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||||||||| || || || ||||| || || ||||| ||||||||||| Sbjct 308341 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308400 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | |||||||| || ||||| || | || | | || ||||| ||| Sbjct 308401 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308460 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| ||||| || || ||| || ||| | || || || ||| ||| || Sbjct 308461 ATTCCTTCCTTGTCCTGGATCTTAGCT-TTAACATTCTCGATCGTGTCGGAGGGTTCAAC 308519 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| || || | ||||||||||| |||||||| Sbjct 308520 TTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308567 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||||||||| || || || ||||| || || ||||| ||||||||||| Sbjct 308569 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308628 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | |||||||| || ||||| || | || | | || ||||| ||| Sbjct 308629 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308688 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| ||||| || || ||| || ||| | || || || ||| ||| || Sbjct 308689 ATTCCTTCCTTGTCCTGGATCTTAGCT-TTAACATTCTCGATCGTGTCGGAGGGTTCAAC 308747 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| || || | ||||||||||| |||||||| Sbjct 308748 TTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308795 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||||||||| || || || ||||| || || ||||| ||||||||||| Sbjct 308797 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308856 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | |||||||| || ||||| || | || | | || ||||| ||| Sbjct 308857 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308916 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| ||||| ||||| ||| || ||| | || || || ||| ||| || Sbjct 308917 ATTCCTTCCTTGTCCTGGATTTTAGCT-TTAACATTCTCGATCGTGTCGGAGGGTTCAAC 308975 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || || || ||||| || || | ||||| |||||||| ||||| || Sbjct 308976 TTCCAAAGTGATCGTTTTGCCAGTTAAGGTTTTCACAAAAATCTGCATCTT 309026 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||| |||||||| ||||| || ||||| || || ||||| ||||| ||||| Sbjct 307885 CCCCCTCGCAATCTTAGTACTAAGTGCAGGGTTGATTCCTTTTGAATGTTATAATCAGAC 307944 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | |||||||| || ||||| || | || | | || ||||| ||| Sbjct 307945 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308004 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| ||||| || || ||| || ||| | || || || ||| ||| || Sbjct 308005 ATTCCTTCCTTGTCCTGGATCTTAGCT-TTAACATTCTCGATCGTGTCGGAGGGTTCAAC 308063 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| || || | ||||||||||| |||||||| Sbjct 308064 TTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362155386151695