Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq445 206 2e-48 seq10 123 2e-23 seq131 100 2e-16 seq221 86.0 5e-12 >seq445 Length=79264 Score = 206 bits (228), Expect = 2e-48 Identities = 645/985 (65%), Gaps = 23/985 (2%) Strand=Plus/Plus Query 100309 TTCGTTTTCAATTTGGCGATAATCGACAACGCCGTCTTCCCAAGTGCCGGTCACGGGCCC 100368 |||||| | |||| | |||||| | ||| ||||||| ||| || || | || || || Sbjct 26742 TTCGTTGGCGATTTCTCTATAATCAATAACACCGTCTTGCCATGTTCCTTTGACTGGTCC 26801 Query 100369 GGCAGCTGTGCCTGTGAAATAGTTGTCACCGTCATAGCCCGCCACGCCTGTCCAACCGCG 100428 | ||| |||||||||| || | || || || || || || ||||| || || Sbjct 26802 AGTAGCATTGCCTGTGAATGGATTATTTCCCTCGTAACCATTAACCCCAGTCCATCCTCG 26861 Query 100429 GCCGTACATGGCAACGCCCACAATAATTTTGCGCGGGTCCACGCCCTGGTTCGTGAGCAA 100488 || ||||| ||||| || || | || || ||| ||| || || | | ||| Sbjct 26862 ACCATACATAGCAACACCAACTACGATCTTTTTCGGTGACACACCTTGA---GCTAACAA 26918 Query 100489 ---TTTCACGGCGTGATCCGTGTTGTACAGCTCGTTCGGGTTCCAACTCGGCGCGTAGAG 100545 |||||| || || || |||| ||| || || ||||| ||| || || | Sbjct 26919 ATATTTCACACCGAAGTCGGTTGTGTAAGTCTCTTTAGGATTCCATGCCGGTGCATACAA 26978 Query 100546 AGTGGTTTGGTAGCCCAAATCGGTGTTTGACCAGGCGCCTTTAAAATCGTAGCTCATAAG 100605 | ||||| | |||||| |||||||| || ||||| |||||||| ||||||| Sbjct 26979 CGGAGTTTGATGTCCCAAAGTATCATTTGACCATGCTCCTTTGAAATCGTAACTCATAAC 27038 Query 100606 AAATATTTTATCGAGAAGCTTTTGCGCAACGTCGTACTGTACCACAGCAATTTTGTCATA 100665 || || | || | | |||||| |||| | || || ||||||||| | Sbjct 27039 GAAAATGTGGTCCATGTATTGTTGCGCTTTTGCGTAATCGACAACCTGAATTTTGTCCCA 27098 Query 100666 GCCGGAACTGATTGCGCTTGTCAACTCGTACGTTTTGCCCGT--TTGCAGTTGTAGCTGG 100723 || | ||||||||| |||| ||||||||||| || || | |||| | | | Sbjct 27099 TCCAGCACTGATTGCTGAGGTCAGTTCGTACGTTTTACCAGTGGTAGCAGATAAATCA-- 27156 Query 100724 TCCAGCATCGCGCGCAATTCCTTCAGTAAAATGTTGTACGTGTCGGCGTCGCGCTCCCCG 100783 || ||||| | || ||||| | || ||| | ||| | | || || | Sbjct 27157 TCAAGCATTTCACGTAATTCTTCCATCAAACTAACGTAAACAGCACCATCT---TCTGGG 27213 Query 100784 TTGCCAAGAGTC-GGGTTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCAATGTCCACGCC 100842 | || || ||| ||||| || ||||| || || || |||||||||||||| || || || Sbjct 27214 CTTCCGAG-GTCTGGGTTAGCACCTTTACCACCAGGGAACTCCCAGTCAATATCAACACC 27272 Query 100843 GTCAAAAAACTTCCACACCTGCAAA--AATTCCTTGACCGAGTCCACAAACACGC-GCCG 100899 |||||| || ||| || | ||| || || || || || || ||||| ||| | || Sbjct 27273 GTCAAAGAATTTC--CAGGTTAAAAGGAAATCTTTAACAGATTCTACAAA-TCGCTGTCG 27329 Query 100900 TTTTTCCGCATC-GTGCATGAAATAGAACGGGTCGGACAACGTCCAGCCGCCGATGGACG 100958 || | ||| ||| | ||| |||| || || | || ||||| || || || || | Sbjct 27330 CTTACTCTTATCAGTG-AAGAAGAAGAAAGGATCAGCTAAAGTCCACCCACCAATTGATG 27388 Query 100959 GCAGAATTTTGAGGTGCGGATTGGCCAGCTTGGCCGCCATTAGCTGACCGAAATTGCCCT 101018 | | ||| || | || || || || | || | ||| | ||||| |||||||| | Sbjct 27389 GTAAAATCTTCAAGTCTGGTTTAGCTTGTTTCAATGACATCAATTGACCAAAATTGCCTT 27448 Query 101019 TGTACGGCTCGTTCCATGCGGACACGCCCTTTTGCGGTTTTTGTATTGCGGCCCAGGGAT 101078 | || || || ||||| | ||| | || |||| ||||| |||| || ||||| |||| Sbjct 27449 TATAAGGTTCATTCCAGGAGGATAGACCTCTTTGAGGTTTCTGTAAAGCAGCCCAAGGAT 27508 Query 101079 CGTGAATGGCGACTTTGAAATCTGAACGACCCTTGCAGGAGCGCTGCAGCGCTTCAAAAC 101138 | || |||| || || |||||| ||||| |||| || ||||| || |||| ||||| Sbjct 27509 CATGGATGGAAACCTTAAAATCTTCCCGACCACTGCATGAACGCTGTAGTGCTTGAAAAC 27568 Query 101139 TGCCGGGAATGGTTTTGAGGGCGTCGTTGAGGCCGTCGCCGCCGCAAATGGGTATGAACC 101198 | || || ||| | ||| || | ||| || || || || || |||||||| | Sbjct 27569 TTCCCTCGATTTCTTTTAAACTGTCATTAATGCCATCACCCCCACATATCGGTATGAAAC 27628 Query 101199 CGTACAACAGATGCGAGAGATTGGGCAGCGGCACTTTGTCTACCGGAAAATTGCGGCCGT 101258 |||| | ||||| | |||||| || | |||||| || || || || || | | || Sbjct 27629 CGTAAAGAAGATGTGTGAGATTTGGAATCGGCACACGATCGACGGGGAATTTCCTGGGGT 27688 Query 101259 ACACGCCCCACTCTACAAAATACGC 101283 | || ||||| || || || || || Sbjct 27689 ATACACCCCATTCAACGAAGTAAGC 27713 >seq10 Length=3673010 Score = 123 bits (136), Expect = 2e-23 Identities = 139/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 24873 ACCTTTTGTACATAATCGCGGCCCTTGACAAGTAGTACGTATGCGCAGCGCCCGAACCAA 24932 ||||| | || || || | ||||||||| || | ||||| ||||| | | ||||||| Sbjct 115533 ACCTTCTCTATGTACTCCCTGCCCTTGACGAGCTGAACGTAAGCGCACCTACTGAACCAA 115592 Query 24933 AGCGCGTGTTGTTGCCACGGCTCGTCATCTTGCTCCCAGTTGTCCAAACCGCCGTCGCAG 24992 | ||||| |||| ||| || |||| || | |||||||| | | ||||||||||||| Sbjct 115593 CGAGCGTGCTGTTCCCAGGGGACGTCGTCATTCTCCCAGTCCTTGAGACCGCCGTCGCAG 115652 Query 24993 TAAAAACATTTGACTTTGTCGCTACGGCCGGTGTAAAAGAAGCCAGCTTCTGCAAGTTTT 25052 |||| ||||| ||| || | |||||||||||||||| || ||||| || || | | Sbjct 115653 AAAAAGCATTTAGTTTTATCACCCTGGCCGGTGTAAAAGAATCCGGCTTCGGCCAGCTCT 115712 Query 25053 TCGGGC 25058 |||||| Sbjct 115713 TCGGGC 115718 >seq131 Length=856804 Score = 100 bits (110), Expect = 2e-16 Identities = 163/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| ||| |||| |||| ||||| || || ||||||||||| |||||||| | | Sbjct 308797 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308856 Query 18875 ATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCAC 18930 | || |||||| || | ||| || || ||| | |||||||||||||| || Sbjct 308857 AGGGT----GCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGG 308912 Query 18931 GGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTC 18990 ||| | || || ||||| ||||| ||| || | ||| || ||| || || Sbjct 308913 GGGAATTCCTTCCTTGTCCTGGATTTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTC 308972 Query 18991 CGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 ||| | || || ||||| || ||||| ||||| |||||||| ||||| || Sbjct 308973 AACTTCCAAAGTGATCGTTTTGCCAGTTAAGGTTTTCACAAAAATCTGCATCTT 309026 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| ||| |||| |||| ||||| || || ||||||||||| |||||||| | | Sbjct 308113 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308172 Query 18875 ATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCAC 18930 | || |||||| || | ||| || || ||| | |||||||||||||| || Sbjct 308173 AGGGT----GCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGG 308228 Query 18931 GGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTC 18990 ||| | || || ||||| || || ||| || | ||| || ||| || || Sbjct 308229 GGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTC 308288 Query 18991 CGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | || || ||||| || ||||| ||||| ||||| |||||||| Sbjct 308289 AACTTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308339 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| ||| |||| |||| ||||| || || ||||||||||| |||||||| | | Sbjct 308341 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308400 Query 18875 ATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCAC 18930 | || |||||| || | ||| || || ||| | |||||||||||||| || Sbjct 308401 AGGGT----GCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGG 308456 Query 18931 GGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTC 18990 ||| | || || ||||| || || ||| || | ||| || ||| || || Sbjct 308457 GGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTC 308516 Query 18991 CGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | || || ||||| || ||||| ||||| ||||| |||||||| Sbjct 308517 AACTTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308567 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| ||| |||| |||| ||||| || || ||||||||||| |||||||| | | Sbjct 308569 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308628 Query 18875 ATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCAC 18930 | || |||||| || | ||| || || ||| | |||||||||||||| || Sbjct 308629 AGGGT----GCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGG 308684 Query 18931 GGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTC 18990 ||| | || || ||||| || || ||| || | ||| || ||| || || Sbjct 308685 GGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTC 308744 Query 18991 CGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | || || ||||| || ||||| ||||| ||||| |||||||| Sbjct 308745 AACTTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308795 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 18814 TCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGC 18873 ||| |||||||| |||| || | ||||| || || ||||||||||| || ||||| | Sbjct 307884 TCCCCCTCGCAATCTTAGTACTAAGTGCAGGGTTGATTCCTTTTGAATGTTATAATCAGA 307943 Query 18874 CATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCA 18929 || || |||||| || | ||| || || ||| | |||||||||||||| || Sbjct 307944 CAGGGT----GCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTG 307999 Query 18930 CGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCT 18989 ||| | || || ||||| || || ||| || | ||| || ||| || | Sbjct 308000 GGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTT 308059 Query 18990 CCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 | ||| | || || ||||| || ||||| ||||| ||||| |||||||| Sbjct 308060 CAACTTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308111 >seq221 Length=486136 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 |||||||| |||||||| |||||||| | | || ||||||||| ||||| || Sbjct 79286 GTAGACTCTTTTTGAATGTTGTAATCGGAAAGAGTACGTCCGTCCTCCAATTGTTTTCCT 79345 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || | || |||||||| || | ||||||||||| |||||| ||| Sbjct 79346 GCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCCTCTTTGTCTTGAATTTTGGCTTTA 79405 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | |||||| ||| || ||| | || ||||| || || || | ||| Sbjct 79406 ACATTTTCAATAGTATCCGAAGGTTCGACTTCCAAAGTTATGGTCTTTCCAGTAAGCGTT 79465 Query 19025 TTGACAAAAATTTGCATTTT 19044 || |||||||| |||||||| Sbjct 79466 TTTACAAAAATCTGCATTTT 79485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414545541190630