Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq221 111 1e-19 seq131 104 1e-17 >seq221 Length=486136 Score = 111 bits (122), Expect = 1e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| || | ||| | || ||||||||||| || |||||||| || | | | || | Sbjct 79268 CGCAAAACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAAAGAGTACGTCCG 79327 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||| ||||| ||| || || |||||||| || | || || || ||||| Sbjct 79328 TCCTCCAATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCCTCTTTG 79387 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || ||| ||| || || |||| || |||| |||||| Sbjct 79388 TCTTGAATTTTGGCTTTAACATTTTCAATAGTATCCGAAGGTTCGACTTCCAAAGTTATG 79447 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTAT 33375 || ||||| ||||| |||||||| ||||| ||||| || || Sbjct 79448 GTCTTTCCAGTAAGCGTTTTTACAAAAATCTGCATTTTGAT 79488 >seq131 Length=856804 Score = 104 bits (114), Expect = 1e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| || | | ||||| |||| || || || ||||| || |||||||||||| Sbjct 308113 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308172 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | || || || || || ||||| || ||| || | | |||||||| | ||| Sbjct 308173 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308232 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || ||||| || || ||| ||| || | | ||||||||| ||||| ||| Sbjct 308233 ATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308292 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| ||| ||||||||||| || | |||||||| || |||||||| Sbjct 308293 TCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308339 Score = 104 bits (114), Expect = 1e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| || | | ||||| |||| || || || ||||| || |||||||||||| Sbjct 308341 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308400 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | || || || || || ||||| || ||| || | | |||||||| | ||| Sbjct 308401 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308460 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || ||||| || || ||| ||| || | | ||||||||| ||||| ||| Sbjct 308461 ATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308520 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| ||| ||||||||||| || | |||||||| || |||||||| Sbjct 308521 TCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308567 Score = 104 bits (114), Expect = 1e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| || | | ||||| |||| || || || ||||| || |||||||||||| Sbjct 308569 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308628 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | || || || || || ||||| || ||| || | | |||||||| | ||| Sbjct 308629 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308688 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || ||||| || || ||| ||| || | | ||||||||| ||||| ||| Sbjct 308689 ATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308748 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| ||| ||||||||||| || | |||||||| || |||||||| Sbjct 308749 TCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308795 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 || || |||| || || || ||||| || || |||||||||| || || || || Sbjct 307903 ACTAAGTGCAGGGTTGATTCCTTTTGAATGTTATAATCAGACAGGGTGCGTCCATCTTCT 307962 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 || ||||| || ||| || | | |||||||| | ||| || ||||| || || Sbjct 307963 AACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 308022 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| ||| || | | ||||||||| ||||| ||| |||| ||| ||||||||| Sbjct 308023 ATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTT 308082 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || | |||||||| || |||||||| Sbjct 308083 CCAGTTAATGTTTTTACAAAGATTTGCAT 308111 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/236 (69%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| || | | ||||| |||| || || || ||||| || |||||||||||| Sbjct 308797 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308856 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | || || || || || ||||| || ||| || | | |||||||| | ||| Sbjct 308857 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308916 Query 33263 ATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 || ||||| || || | | | || ||| || | | ||||||||| ||||| | Sbjct 308917 ATTCCTTCCTTGTCCTGGATTTTAGC---TTTAACATTCTCGATCGTGTCGGAGGGTTCA 308973 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTAT 33375 || |||| ||| |||||||| || || | ||||| || ||||| ||||| || || Sbjct 308974 ACTTCCAAAGTGATCGTTTTGCCAGTTAAGGTTTTCACAAAAATCTGCATCTTGAT 309029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318756639874710