Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq64 100 2e-16 seq221 96.9 2e-15 >seq64 Length=1946208 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||| | ||| ||||| | ||| | || || ||||||||||| || ||| Sbjct 785700 ACCTCCTCTAAGTCTCAACACAAGATGCAAGGTAGATTCCTTTTGAATATTGTAGTCGGA 785759 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| ||| |||| |||||||||||||| || |||||||| || ||||| || | || Sbjct 785760 TAAGGTACGACCATCTTCCAATTGTTTTCCAGCGAATATCAATCGCTGCTGATCTGGTGG 785819 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| || ||| || || || || | | | || || | | ||| || Sbjct 785820 AATACCTTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCAGAGGCCTCAAC 785879 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| |||||||| |||| ||||| || || || ||||| Sbjct 785880 CTCTAGGGTAATGGTTTTACCCGTTAGGGTCTTAACGAAAATCTGCAT 785927 >seq221 Length=486136 Score = 96.9 bits (106), Expect = 2e-15 Identities = 148/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||||||||| || |||||| | ||| | || |||||||||||||||||||| Sbjct 79291 CTCTTTTTGAATGTTGTAATCGGAAAGAGTACGTCCGTCCTCCAATTGTTTTCCTGCAAA 79350 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 ||||| |||||||| || | || | || ||||| ||| |||||| ||| || | Sbjct 79351 GATCAATCGTTGCTGATCTGGTGGGATTCCCTCTTTGTCTTGAATTTTGGCTTTAACATT 79410 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| |||||| | || || || || | || || || || || || | || || || Sbjct 79411 TTCAATAGTATCCGAAGGTTCGACTTCCAAAGTTATGGTCTTTCCAGTAAGCGTTTTTAC 79470 Query 44110 AAATATTTGCATGTCGAGTCTTTGTAACAC 44139 ||| || ||||| | || | | ||||| || Sbjct 79471 AAAAATCTGCATTTTGA-TATCTGTAAAAC 79499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354754272818460