Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq445 266 3e-66 seq10 105 6e-18 seq221 95.1 1e-14 seq131 91.5 1e-13 >seq445 Length=79264 Score = 266 bits (294), Expect = 3e-66 Identities = 653/983 (66%), Gaps = 13/983 (1%) Strand=Plus/Plus Query 100996 TAATTCGTTTTTAATTTGGCGATAATCGACAACGCCGTCTTCCCAAGTACCGGTCACGGG 101055 || |||||| |||| | |||||| | ||| ||||||| ||| || || | || || Sbjct 26739 TATTTCGTTGGCGATTTCTCTATAATCAATAACACCGTCTTGCCATGTTCCTTTGACTGG 26798 Query 101056 CCCGGCAGCTGTGCCTGTGAAATAGTTGTCACCGTCATAGCCTGCCACGCCTGTCCAACC 101115 || | ||| |||||||||| || | || || || || || || ||||| || Sbjct 26799 TCCAGTAGCATTGCCTGTGAATGGATTATTTCCCTCGTAACCATTAACCCCAGTCCATCC 26858 Query 101116 GCGGCCGTACATGGCAACGCCCACAATAATTTTGCGCGGGTCTACGCCCTGGTTCGTGAG 101175 || || ||||| ||||| || || | || || ||| || || || | Sbjct 26859 TCGACCATACATAGCAACACCAACTACGATCTTTTTCGGTGACACACCTTGAGCTAACAA 26918 Query 101176 CGATTTAACAGCGTAATCCGTGTTGTACAGCTCGTTTGGGTTCCAACTCGGCGCGTAGAG 101235 |||| ||| || | || || |||| ||| || || ||||| ||| || || | Sbjct 26919 ATATTTCACACCGAAGTCGGTTGTGTAAGTCTCTTTAGGATTCCATGCCGGTGCATACAA 26978 Query 101236 TGTAGTTTGATAGCCCAGATCGATGTTTGACCACGCGCCTTTGAAATCGTAGCTCATGAG 101295 | |||||||| |||| | |||||||| || |||||||||||||| ||||| | Sbjct 26979 CGGAGTTTGATGTCCCAAAGTATCATTTGACCATGCTCCTTTGAAATCGTAACTCATAAC 27038 Query 101296 AAATATTTTATCGAGGAACTTTTGCGCAAGATCGTATTTTACTACAGCAATTTTGTCGTG 101355 || || | || | | | | |||||| |||| | || || ||||||||| Sbjct 27039 GAAAATGTGGTCCATGTATTGTTGCGCTTTTGCGTAATCGACAACCTGAATTTTGTCCCA 27098 Query 101356 ACCCGAACTAATTGCACTTGTTAATTCGTATGTTTTGCCCGT--TTGCAGTTGCAACTCG 101413 || | ||| ||||| || | |||||| ||||| || || | |||| | || || Sbjct 27099 TCCAGCACTGATTGCTGAGGTCAGTTCGTACGTTTTACCAGTGGTAGCAGAT--AAATCA 27156 Query 101414 TCCAGCATTGCGCGCAATTCTTTCAGTAAAATGTTGTACGTGTCAGCGTCGCGTTCTTTG 101473 || |||||| | || ||||||| || ||| | ||| || | || |||| | Sbjct 27157 TCAAGCATTTCACGTAATTCTTCCATCAAACTAACGTAAACAGCACCATC---TTCTGGG 27213 Query 101474 TTGCCGAGTGTTGGGTTGGCGCCTTTACCACCCGGAAACTCCCAATCGATGTCTACCCCG 101533 | ||||| |||||| || ||||||||||| || |||||||| || || || || ||| Sbjct 27214 CTTCCGAGGTCTGGGTTAGCACCTTTACCACCAGGGAACTCCCAGTCAATATCAACACCG 27273 Query 101534 TCAAAAAATTTCCAAACCTGCAAA--AATTCTTTGACAGAATCCACAAACACACGCCGTT 101591 ||||| |||||||| | ||| || ||||| ||||| || ||||| | || | Sbjct 27274 TCAAAGAATTTCCAGG--TTAAAAGGAAATCTTTAACAGATTCTACAAATCGCTGTCGCT 27331 Query 101592 TTATCGCGTC-GTGCATATAATAGAACGGGTCGGACAATGTCCAGCCGCCGATGGACGGC 101650 | || || ||| | | | |||| || || | || ||||| || || || || || Sbjct 27332 TACTCTTATCAGTGAAGAAGA-AGAAAGGATCAGCTAAAGTCCACCCACCAATTGATGGT 27390 Query 101651 AAAATTTTAAGGTGTGGATTGGCCAATTTGGCCGCCATTAGCTGACCAAAGTTGCCTTTG 101710 ||||| || | || ||| || || ||| | ||| | |||||||| |||||||| Sbjct 27391 AAAATCTTCAAGTCTGGTTTAGCTTGTTTCAATGACATCAATTGACCAAAATTGCCTTTA 27450 Query 101711 TAGGGCTCGTTCCAAGCAGATACACCTTTCTGCGGTTTTTGTATTGCGGCCCAAGGATCG 101770 || || || ||||| | |||| |||| | || ||||| |||| || ||||||||||| Sbjct 27451 TAAGGTTCATTCCAGGAGGATAGACCTCTTTGAGGTTTCTGTAAAGCAGCCCAAGGATCA 27510 Query 101771 TGGATAGCAACTTTAAAATCTGAACGGCCCTGGCAAGAACGTTGCAACGCTTCAAAACTA 101830 ||||| | ||| ||||||||| || || ||| ||||| || | |||| |||||| Sbjct 27511 TGGATGGAAACCTTAAAATCTTCCCGACCACTGCATGAACGCTGTAGTGCTTGAAAACTT 27570 Query 101831 CCGGGTATGGTTTTGAGGGCGTCGTTAAGGCCATCGCCGCCACAAATGGGTATGAACCCG 101890 || || ||| | ||| |||| |||||| || ||||| || |||||||| ||| Sbjct 27571 CCCTCGATTTCTTTTAAACTGTCATTAATGCCATCACCCCCACATATCGGTATGAAACCG 27630 Query 101891 TACAACAAATGTGAGAGGTTGGGCAGCGGCACTTTGTCCACCGGAAAGTTGCGACCATAC 101950 || | | ||||| ||| || || | |||||| || || || || || | || Sbjct 27631 TAAAGAAGATGTGTGAGATTTGGAATCGGCACACGATCGACGGGGAATTTCCTGGGGTAT 27690 Query 101951 ACGCCCCATTCTACAAAATACGC 101973 || |||||||| || || || || Sbjct 27691 ACACCCCATTCAACGAAGTAAGC 27713 >seq10 Length=3673010 Score = 105 bits (116), Expect = 6e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 23552 GCCCTTTACGAGCCGCACGTATGTGCAGCGATCAAACCAACGTGCGTGTTCTTCCCACGG 23611 |||||| |||||| | ||||| | ||| | | |||||||| ||||| | |||||| || Sbjct 115553 GCCCTTGACGAGCTGAACGTAAGCGCACCTACTGAACCAACGAGCGTGCTGTTCCCAGGG 115612 Query 23612 CTCGTCGGTGCTTTCCCAGTCTTTGAGGCCGCCGTCGCAATGAAAACATTTGACCCTGTC 23671 ||||| | |||||||| ||||| ||||||||||| ||| ||||| | || Sbjct 115613 GACGTCGTCATTCTCCCAGTCCTTGAGACCGCCGTCGCAGAAAAAGCATTTAGTTTTATC 115672 Query 23672 ACCCTTGCCGGTGTAATAAAAACCGGCTTCAGCTAATTGCTCTGGCTTTTG 23722 ||||| |||||||||| | || |||||||| || | | || ||||| || Sbjct 115673 ACCCTGGCCGGTGTAAAAGAATCCGGCTTCGGCCAGCTCTTCGGGCTTCTG 115723 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 23892 AACGGGCACTGCGGTGCCCATCGTTTATGATCTACGGCCGGGTCATCGCCCTCCAACCAG 23951 |||||||||||||| ||||| || | |||||| ||| ||||||||||| ||| ||| Sbjct 115905 AACGGGCACTGCGGCGCCCAGCGCTGATGATCCGTGGCGGGGTCATCGCCGACCATCCAC 115964 Query 23952 CGCATTATTTCCACTTTGCAAAACGCGCAGCGCACCTCGTCCGAGCGCCTCAAATAGTAA 24011 ||| || || || ||||| || ||||| | |||||||| | | | | ||||| Sbjct 115965 TTCATGATCTCGACCTTGCAGAAGGCGCACCTGACCTCGTCGCCTCTCTTGAGGTAGTAG 116024 Query 24012 AACCCGTTGGCGGCCATTTGACTTGGTTCCAAAAATGACACGGGCCAGT 24060 |||||||| |||| | | || || |||| ||||||||||| Sbjct 116025 AACCCGTTCCGCGCCAGTAGCTCCGGCGACAGGAATGGCACGGGCCAGT 116073 >seq221 Length=486136 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||| || | | ||| || | ||| || ||||| |||||||| |||||||||||| Sbjct 79256 CCTCCGCGAAGACGCAAAACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAA 79315 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| || ||||||||||| || ||| | || | | || ||||| || Sbjct 79316 AGAGTACGTCCGTCCTCCAATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGTGGG 79375 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | || |||||||| |||||| ||| || | ||| || ||| |||||| | Sbjct 79376 ATTCCCTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATAGTATCCGAAGGTTCGACT 79435 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 |||| || ||||| || || || | |||||| |||||||| |||||||| Sbjct 79436 TCCAAAGTTATGGTCTTTCCAGTAAGCGTTTTTACAAAAATCTGCATTTT 79485 >seq131 Length=856804 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| || || | ||||| || || || ||||| ||||| ||||||||||| | Sbjct 308797 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308856 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || |||||| || || ||||| ||| | ||||| ||||| || || ||| Sbjct 308857 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308916 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| ||||| ||||| ||| || | | | | ||| ||||| | Sbjct 308917 ATTCCTTCCTTGTCCTGGATTTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308976 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 |||| || || |||||||| || || ||||| |||||||| ||||| || Sbjct 308977 TCCAAAGTGATCGTTTTGCCAGTTAAGGTTTTCACAAAAATCTGCATCTT 309026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419559611485995