Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq149 116 3e-21 >seq149 Length=636072 Score = 116 bits (128), Expect = 3e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 13404 TTTCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATAT 13463 |||| ||| ||| |||||| ||||| |||| | ||||||||| || |||| || Sbjct 239149 TTTCTTTAGGGTCCCTAATATATGTATCAATCAGAAGTGAATACATTTCCGAGTGAACAT 239090 Query 13464 TTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGT 13523 ||||||| || || ||||||||||| || ||||| ||||| | ||||||||||| | Sbjct 239089 TTTCCATAGCAATCTGGAAACCATAGAAGCATCTCGCCTCAGTCACCTGAACTTCCTGGG 239030 Query 13524 AAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTA 13583 | || | |||| | | || || || ||||| || || || |||||||| || | || Sbjct 239029 AGAAGCGTTCTACGAGATTCTCATTTACTATACCATCTGATGCCGCAAAAAACGCCAATA 238970 Query 13584 TGTGCTTAATAAAttttttttC 13605 ||||||||||| | | |||| Sbjct 238969 CATGCTTAATAAAGTGTCTTTC 238948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430954062233790