Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq221 159 8e-34 seq64 156 1e-32 seq131 141 2e-28 seq41 96.9 8e-15 seq149 87.8 4e-12 >seq221 Length=486136 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | ||||| ||||| ||||| || || || || ||||| | ||||| || Sbjct 79274 ACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAAAGAGTACGTCCGTCCTCC 79333 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | ||||||||| ||||| || | | || ||||| || || ||||| ||||| || ||| Sbjct 79334 AATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCCTCTTTGTCTTGA 79393 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || || ||||| |||||||| | ||||| |||||| || || | || || ||||| Sbjct 79394 ATTTTGGCTTTAACATTTTCAATAGTATCCGAAGGTTCGACTTCCAAAGTTATGGTCTTT 79453 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 |||||||| ||||||||||| |||||||||||| Sbjct 79454 CCAGTAAGCGTTTTTACAAAAATCTGCATTTTG 79486 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| ||||| | ||| ||||| ||||| || || |||||||| || || | |||||| Sbjct 78587 AGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCGTCT 78646 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || |||||||| || || | |||||| || ||||| || |||||||| || Sbjct 78647 TCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGGATACCTTCTTTGTCT 78706 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || || || ||||||||||| || | || || |||||| || ||||| || || || Sbjct 78707 TGGATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGACTTCTAGGGTGATGGTT 78766 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | || || || || |||||||| Sbjct 78767 TTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 78798 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| ||||| | ||| ||||| ||||| || || |||||||| || || | |||||| Sbjct 78815 AGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCGTCT 78874 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || |||||||| || || | |||||| || ||||| || |||||||| || Sbjct 78875 TCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGGATACCTTCTTTGTCT 78934 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || || || ||||||||||| || | || || |||||| || |||| || || || Sbjct 78935 TGGATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGACTTCTAAGGTGATGGTT 78994 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | || || || || |||||||| Sbjct 78995 TTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 79026 >seq64 Length=1946208 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || || | || ||||| || |||||||| || |||||||| ||||| ||| Sbjct 785701 CCTCCTCTAAGTCTCAACACAAGATGCAAGGTAGATTCCTTTTGAATATTGTAGTCGGAT 785760 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | || | ||| ||||| | |||||||||||| || || | | ||| ||||| || || Sbjct 785761 AAGGTACGACCATCTTCCAATTGTTTTCCAGCGAATATCAATCGCTGCTGATCTGGTGGA 785820 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || || || ||||| || |||||||| || | ||| || | || ||| Sbjct 785821 ATACCTTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCAGAGGCCTCAACC 785880 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| ||||| || ||||| || || || || || || |||||||||||| Sbjct 785881 TCTAGGGTAATGGTTTTACCCGTTAGGGTCTTAACGAAAATCTGCATTTTG 785931 >seq131 Length=856804 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 |||||||| | || ||||||| || | || ||||| || ||||| ||||| ||||| Sbjct 307884 TCCCCCTCGCAATCTTAGTACTAAGTGCAGGGTTGATTCCTTTTGAATGTTATAATCAGA 307943 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || || | || ||||||| || || || ||||| || || ||||| || || || || Sbjct 307944 CAGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGG 308003 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 |||||||| || ||||| ||||| ||||| ||||| || | || ||| ||||| || Sbjct 308004 AATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAAC 308063 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || | || || || || ||||| | |||||||||||| || ||||| Sbjct 308064 TTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308111 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || ||||| | || | || ||||| || ||||| || || ||| Sbjct 308110 ATCCCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCA 308169 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||||| || || || ||||| || || ||||| || || || Sbjct 308170 GACAGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGG 308229 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || ||||| ||||| ||||| ||||| || | || ||| ||||| Sbjct 308230 GGAATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCA 308289 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || || || ||||| | |||||||||||| || ||||| Sbjct 308290 ACTTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308339 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || ||||| | || | || ||||| || ||||| || || ||| Sbjct 308338 ATCCCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCA 308397 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||||| || || || ||||| || || ||||| || || || Sbjct 308398 GACAGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGG 308457 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || ||||| ||||| ||||| ||||| || | || ||| ||||| Sbjct 308458 GGAATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCA 308517 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || || || ||||| | |||||||||||| || ||||| Sbjct 308518 ACTTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308567 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || ||||| | || | || ||||| || ||||| || || ||| Sbjct 308566 ATCCCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCA 308625 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||||| || || || ||||| || || ||||| || || || Sbjct 308626 GACAGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGG 308685 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || ||||| ||||| ||||| ||||| || | || ||| ||||| Sbjct 308686 GGAATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCA 308745 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || || || ||||| | |||||||||||| || ||||| Sbjct 308746 ACTTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308795 >seq41 Length=2363699 Score = 96.9 bits (106), Expect = 8e-15 Identities = 176/252 (70%), Gaps = 7/252 (3%) Strand=Plus/Plus Query 238526 AAATGATAGAAGAAAA--TATATTTACTCTTTAAAACAGCTCGAGAGAGCCGAAACTCAC 238583 |||||| | ||||| | ||||| ||| ||| || ||| || | ||| ||||| || Sbjct 735288 AAATGACAAAAGAACACATATATATACACTTGAA--CAGTTCTGCAAAGCAGAAACCCAT 735345 Query 238584 GATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTC 238643 || ||| ||||| || || || ||||||||||| | | || || |||||| | || Sbjct 735346 GACGACCTGTGGAACTCGGCTCAAATACAAATGGTTAAAGAGGGGAAGATGCATGGGTTT 735405 Query 238644 TTACGAATGTATTGGGCTAAAAAGATACTTGAATGGA-CTAGATCTCCAAAGGAAGCTCT 238702 || ||||||| ||| ||| ||||| || || |||| || || ||| | || || | Sbjct 735406 CTAAGAATGTACTGGTGTAAGAAGATCCTAGAGTGGACCTCGA-GTCCGGAAGAGGCATT 735464 Query 238703 TAGATATAGTATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGATA 238762 | |||| || ||| |||||||| | ||| | ||||| | ||| |||| |||||| Sbjct 735465 GAAATATGCCATATATTTGAACGATCATTACAGTGTTGACGGCAGGGACCCTAGCGGATA 735524 Query 238763 CGTAGGT-TGTA 238773 || ||| |||| Sbjct 735525 TGTTGGTGTGTA 735536 >seq149 Length=636072 Score = 87.8 bits (96), Expect = 4e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 268859 GCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAA 268918 ||||||||||| | |||||||| || || || ||||| ||||| |||| || Sbjct 238975 GCGTTTTTTGCGGCATCAGATGGTATAGTAAATGAGAATCTCGTAGAACGCTTCTCCCAG 239034 Query 268919 GAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATT 268978 || || ||| | |||| || ||||| || || || |||||||| ||||| |||||| || Sbjct 239035 GAAGTTCAGGTGACTGAGGCGAGATGCTTCTATGGTTTCCAGATTGCTATGGAAAATGTT 239094 Query 268979 CATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 || || || ||||| || | || ||||| ||||| Sbjct 239095 CACTCGGAAATGTATTCACTTCTGATTGATACATATAT 239132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151318811384660