Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq445 196 4e-45 >seq445 Length=79264 Score = 196 bits (216), Expect = 4e-45 Identities = 796/1243 (64%), Gaps = 25/1243 (2%) Strand=Plus/Minus Query 30184 GACAACAACAAACCATACACTAGAGCGACGGATCATGTGGTGGCCGGTTACTTTGTAGAG 30243 || || |||||||||| || | || | | | | || || | | |||||| || || Sbjct 27758 GAAAAGAACAAACCATTCAAACAAACGTCTGGTAAAGTCGTTGGAGCTTACTTCGTTGAA 27699 Query 30244 TGGGGTGTTTACGACAGACAATATCCAGCAGACTTAGTTCCCGTCCCCAACCTTACGCAT 30303 |||||||| ||| ||| ||| || | || || || | || || || || ||| Sbjct 27698 TGGGGTGTATACCCCAGGAAATTCCCCGTCGATCGTGTGCCGATTCCAAATCTCACACAT 27639 Query 30304 CTTTTGTATGGCTTTGTGCCTCTCTGCGGTGGAGATGGTATAAACGATAGCTTAAAGCAA 30363 ||| | || || || | || | || || || ||||| || || || || ||||| || Sbjct 27638 CTTCTTTACGGTTTCATACCGATATGTGGGGGTGATGGCATTAATGACAGTTTAAAAGAA 27579 Query 30364 GTGCCGGGTTCGTTTGAGGCTTTACAAAAATCTTGCGCGGGTCGAGAGGATTTTAAAGTG 30423 | ||| ||| | || |||| || ||| ||||| || |||||||| || Sbjct 27578 ATCGAGGGAAGTTTTCAAGCACTACAGCGTTCATGCAGTGGTCGGGAAGATTTTAAGGTT 27519 Query 30424 ACGATTCACGATATTTGGGGCGCTCTTCAAAAACCACAAAAAGGAGTGGGCGCTTGGGAC 30483 | || || ||| ||||| ||| | || ||||| |||| ||| | | | ||| | Sbjct 27518 TCCATCCATGATCCTTGGGCTGCTTTACAGAAACCTCAAAGAGGTCTATCCTCCTGGAAT 27459 Query 30484 GATCCGTATAAAGGAAATTTTGGCCAACTGATGGCGATTAAAAGACAC-AATCCCGACCT 30542 || || |||||||| |||||||| ||| ||||| | ||| ||| | | || || ||| | Sbjct 27458 GAACCTTATAAAGGCAATTTTGGTCAATTGATGTC-ATTGAAACAAGCTAAACCAGACTT 27400 Query 30543 TACGATTTTACCGTCTATTGGCGGGTGGACACTTAGC-GACCCTTTCTTTAAATTGAGTT 30601 | ||||||||| || ||||| |||||||| ||||| || |||||||| || | | Sbjct 27399 GAAGATTTTACCATCAATTGGTGGGTGGACT-TTAGCTGATCCTTTCTTCTTCTTCACTG 27341 Query 30602 CTGCCGAAAATCG-CGCCGTTTTCGTTGAGTCCGCACGAGAGTATTTGCGCACATGGAAA 30660 | || || | || ||| || || || | ||| | | || |||||| Sbjct 27340 ATAAGAGTAAGCGACAGCGATTT-GTAGAATCTGTTAAAGATTTCCTTTTAACCTGGAAA 27282 Query 30661 TTTTTTGACGGACTAGACATCGACTGGGAGTTTCCGGGCGGTAAAGGTGCTAATCCCGAA 30720 || |||||||| | || || ||||||||||| || || |||||||||||||| || || Sbjct 27281 TTCTTTGACGGTGTTGATATTGACTGGGAGTTCCCTGGTGGTAAAGGTGCTAACCCAGAC 27222 Query 30721 TTAGGAGATCCAGAAAAGGATGGAGTAACATATGTGCAGTTATTGAAAGAGCTCAGAGAA 30780 | ||| |||||| ||||| | || || || || |||| | | ||| Sbjct 27221 CTCGGAAGCCCAGAA---GATGGTGCTGTTTACGTTAGTTTGATGGAAGAATTACGTGAA 27165 Query 30781 ATGCTAAACGATCTTTCTAAAGAAACAGGGAAAAAATACCAGCTCACCTCGGCGATTAGC 30840 ||||| | ||| | ||| || || |||| ||| | || ||||| || || || Sbjct 27164 ATGCTTGATGATTTATCTGCTACCACTGGTAAAACGTACGAACTGACCTCAGCAATCAGT 27105 Query 30841 GCGGGGTACGATAAAATCTCTATAGTTAATTATGAAAATGCGCAAGAGTATCTTGATCAC 30900 || || | || ||||| | || |||| | ||| |||||| | || | || ||| Sbjct 27104 GCTGGATGGGACAAAATTCAGGTTGTCGATTACGCAAAAGCGCAACAATACATGGACCAC 27045 Query 30901 ATTTTTGTTATGACGTACGATTTTAAAGGCGCTTGGTCTAACACGGACTTGGGATATCAC 30960 ||||| ||||||| |||||||| ||||| || ||||| || |||||| |||| Sbjct 27044 ATTTTCGTTATGAGTTACGATTTCAAAGGAGCATGGTCAAATGATACTTTGGGACATCAA 26985 Query 30961 ACTACACTTTATTCACCCTCTTGGAACGCTGAAGAAAAATATACTGCCGAGTACGCGACA 31020 ||| | | ||| |||| | ||||| || |||| | || || |||| | || Sbjct 26984 ACTCCGTTGTATGCACCGGCATGGAATCCTAAAGAGACTTACACAACCGACTTCGGTGTG 26925 Query 31021 AAGGAGTTGTTAAAACAAAACGTCAATAGTAAGAAAATAGTGCTAGCTGTTGCAATGTAC 31080 || | |||||| ||| || || || || || | | |||||| ||||| Sbjct 26924 AAATATTTGTTAGCTCAAGGTGTGTCACCGAAAAAGATCGTAGTTGGTGTTGCTATGTAT 26865 Query 31081 GGAAGAGGGTGGACGGGTGTGCATGACATAAAAAACAACAATCCCTTTACGGGTGTAGCT 31140 || |||| ||||| || || ||| | || ||||| || || || ||| Sbjct 26864 GGTCGAGGATGGACTGGGGTTAATGGTTACGAGGGAAATAATCCATTCACAGGCAATGCT 26805 Query 31141 CAGGGGCCGATTAAAGGAACTTGGGAAAGTGGAGTTGTAGATTACAAAGATTT------- 31193 || || | |||||||| ||| || || ||| | ||||| | ||| | Sbjct 26804 ACTGGACCAGTCAAAGGAACATGGCAAGACGGTGTTATTGATTATAGAGAAATCGCCAAC 26745 Query 31194 GATA----CAAAGGTACACCGACACT-TATTATGACTCTGTAGCGCAAGCGGCATATGCG 31248 || | | |||| | | | | | | || ||| |||||| || || | |||| Sbjct 26744 GAAATAGCCCAAGGAAAATGGGAATTCCACTACGACAATGTAGCCCAGGCTCCTTATGTC 26685 Query 31249 TTCGCAGAGAATGT--TGGTGATCTACTTACTTACGATAACCCAACGAGTGTGCAAGCTA 31306 || |||| || | || || || | ||||||||||| ||| ||| | | Sbjct 26684 TT--CAGACCATCTACCGGGGACCTCGTCACTTACGATAATGCAAGATCTGTTATTGAAA 26627 Query 31307 AGGGAAAGTTTGTAATAGACAACAATTTGGGTGGTTTGTTTGCGTGGGAACTGGACGCCG 31366 |||| || | ||||| | || || | |||||| | || ||||||||| | || |||| Sbjct 26626 AGGGTAAATATGTAAGGAATAATAAACTCGGTGGTCTCTTCGCGTGGGAAATTGATGCCG 26567 Query 31367 ACAATGGCGACATTCTTAACAGCATGAACGAGGGTTTAGGTAA 31409 ||||||| || | || ||| |||||| |||||| ||||| Sbjct 26566 ACAATGGTGATTTACTGAACGCTATGAACATGGGTTTGGGTAA 26524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421223502075395