Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq177 125 4e-24 seq1129 123 1e-23 seq71 122 5e-23 seq131 120 2e-22 seq1 118 6e-22 seq201 116 2e-21 seq507 114 7e-21 seq163 114 7e-21 seq157 114 7e-21 seq196 113 2e-20 seq36 89.7 3e-13 >seq177 Length=689700 Score = 125 bits (138), Expect = 4e-24 Identities = 80/88 (91%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| ||| |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 632427 AAAAAAAGAAAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 632486 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||| |||||||||||||||||||||| Sbjct 632487 GCTCTAACCAACTGAGCTAATGGGCCGT 632514 >seq1129 Length=4530 Score = 123 bits (136), Expect = 1e-23 Identities = 79/87 (91%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | |||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 4012 AAAAAAAAAGATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 4071 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||||||||| Sbjct 4072 GCTCTAACCAACTGAGCTAATGGGCCG 4098 >seq71 Length=974514 Score = 122 bits (134), Expect = 5e-23 Identities = 84/95 (88%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 11439 TTAATA--AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||| ||||| || |||||||||| |||||||||| ||||||||||||||||| Sbjct 700118 TTAATAGCAAAAACGAACATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 700177 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||||||| |||||||||||||||||||||| Sbjct 700178 GCACGACGCTCTAACCAACTGAGCTAATGGGCCGT 700212 >seq131 Length=856804 Score = 120 bits (132), Expect = 2e-22 Identities = 79/87 (91%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 696613 AAAAAATTTA-TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 696671 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||||||||| Sbjct 696672 GCTCTAACCAACTGAGCTAATGGGCCG 696698 Score = 120 bits (132), Expect = 2e-22 Identities = 79/87 (91%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 710752 AAAAAATTTA-TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 710810 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||||||||| Sbjct 710811 GCTCTAACCAACTGAGCTAATGGGCCG 710837 Score = 116 bits (128), Expect = 2e-21 Identities = 82/92 (89%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 11441 AATAA-AAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||||| |||| ||| |||||||||| |||||||||| ||||||||||||||||||| Sbjct 736837 AATAACAAAAGGTAATGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 736778 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||| ||||||||||||||||||||| Sbjct 736777 ACGACGCTCTAACCAACTGAGCTAATGGGCCG 736746 Score = 95.1 bits (104), Expect = 6e-15 Identities = 96/124 (77%), Gaps = 10/124 (8%) Strand=Plus/Plus Query 11414 TACAAGAATCCAGGGAAATATAG-AATTAATAAAAAAT-------CAAATTGGCCCATGA 11465 |||||| || | || ||||||| ||| ||||||||| ||| |||||||||| Sbjct 699358 TACAAGTATACTGG--AATATAGTAATAAATAAAAAAATTTATAACAATCTGGCCCATGA 699415 Query 11466 AAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATG 11525 |||||| ||| | || || ||||||||||||| |||||||| ||||||||| ||||| Sbjct 699416 GGGGATCGTACCCTAGATCTCCGCGTTATTAGCATGACGCTCTAACCAACTGACCTAATA 699475 Query 11526 GGCC 11529 |||| Sbjct 699476 GGCC 699479 Score = 95.1 bits (104), Expect = 6e-15 Identities = 96/124 (77%), Gaps = 10/124 (8%) Strand=Plus/Plus Query 11414 TACAAGAATCCAGGGAAATATAG-AATTAATAAAAAAT-------CAAATTGGCCCATGA 11465 |||||| || | || ||||||| ||| ||||||||| ||| |||||||||| Sbjct 713496 TACAAGTATACTGG--AATATAGTAATAAATAAAAAAATTTATAACAATCTGGCCCATGA 713553 Query 11466 AAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATG 11525 |||||| ||| | || || ||||||||||||| |||||||| ||||||||| ||||| Sbjct 713554 GGGGATCGTACCCTAGATCTCCGCGTTATTAGCATGACGCTCTAACCAACTGACCTAATA 713613 Query 11526 GGCC 11529 |||| Sbjct 713614 GGCC 713617 Score = 86.0 bits (94), Expect = 3e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||| || |||| | ||||||| ||||||| | | |||||||||||||||||| ||||| Sbjct 748025 TTGTCCTATGAGGGATTCGAACCCTCGACCTCCTCATTATTAGCACGACGCTCTAACCAA 747966 Query 11515 CTGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 747965 TTGAGCTAATGGGCCG 747950 >seq1 Length=6243310 Score = 118 bits (130), Expect = 6e-22 Identities = 78/87 (90%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || |||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 6208627 AAAAAAGAACGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 6208568 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGT 11531 |||| |||||||||||||||||||||| Sbjct 6208567 CTCTAACCAACTGAGCTAATGGGCCGT 6208541 >seq201 Length=310956 Score = 116 bits (128), Expect = 2e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 283897 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 283838 Query 11516 TGAGCTAATGGGCCGT 11531 |||||||||||||||| Sbjct 283837 TGAGCTAATGGGCCGT 283822 Score = 116 bits (128), Expect = 2e-21 Identities = 83/95 (87%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTG--GCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 ||| || |||||| || ||| |||||||| |||||||||| ||||||||||||||| Sbjct 291318 AATAAAAAAAAAAGGAAGTTGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTAT 291259 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||||||||||||||||||| Sbjct 291258 TAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 291224 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 105160 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 105219 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 105220 TGAGCTAATGGGCC 105233 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 106920 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 106979 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 106980 TGAGCTAATGGGCC 106993 Score = 113 bits (124), Expect = 2e-20 Identities = 88/103 (85%), Gaps = 6/103 (6%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAAT---TGGCCCATGAAAGGA--TCGAACCTTCGACCTTCGCGTTA 11493 ||||||||||| || |||||||||| ||| ||||||| |||||||||||||| Sbjct 109150 TTAATAAAAAAAGGTATGTGTGGCCCATGAGGGGAGATCGAACCCGCGACCTTCGCGTTA 109209 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC-GTCGAC 11535 ||||||||||||||| |||||||||||||||||||| |||||| Sbjct 109210 TTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCTGTCGAC 109252 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 294655 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 294596 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 294595 TGAGCTAATGGGCC 294582 >seq507 Length=52535 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 9124 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 9065 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 9064 TGAGCTAATGGGCCG 9050 >seq163 Length=385688 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 88728 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 88787 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 88788 TGAGCTAATGGGCCG 88802 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 92307 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 92366 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 92367 TGAGCTAATGGGCCG 92381 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 96716 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 96775 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 96776 TGAGCTAATGGGCCG 96790 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 99290 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 99349 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 99350 TGAGCTAATGGGCCG 99364 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 101694 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 101753 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 101754 TGAGCTAATGGGCCG 101768 >seq157 Length=398309 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 166591 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 166532 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 166531 TGAGCTAATGGGCCG 166517 >seq196 Length=822064 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 763974 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 764033 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 764034 TGAGCTAATGGGCC 764047 >seq36 Length=956708 Score = 89.7 bits (98), Expect = 3e-13 Identities = 73/87 (84%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGG--ATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 |||||||||||| || | |||||| ||||||||| |||||||| ||||||||| || Sbjct 228449 ATTGGCCCATGATCGGGGACCGAACCCGCGACCTTCGAGTTATTAGATCGACGCTCTAAC 228508 Query 11512 CAACTGAGCTAATGGG-CCGTCGACGA 11537 | |||||||||||||| || ||||||| Sbjct 228509 CGACTGAGCTAATGGGACCATCGACGA 228535 Lambda K H 0.637 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261474006545020