Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq131 140 3e-28 seq221 125 6e-24 seq64 120 3e-22 seq148 82.4 7e-11 >seq131 Length=856804 Score = 140 bits (154), Expect = 3e-28 Identities = 182/252 (72%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 94756 TAACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGA 94815 ||| | |||| ||| ||| || ||||||||||||| | |||||||||| || || Sbjct 308772 TAATGTTTTTACAAAGATTTGCATCCCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGA 308831 Query 94816 TTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAA 94875 ||||||||| | ||| ||||| || ||| ||| || | ||| || ||| |||| Sbjct 308832 TTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAA 308891 Query 94876 GATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGC 94935 ||| | ||| ||||| ||||| ||||| ||||| ||||| | ||||| || || || Sbjct 308892 GATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATTTTAGCTTTAACATT 308951 Query 94936 GCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCAC 94995 ||| ||||| | | | || || || | ||||| ||||| ||||| | |||||||| Sbjct 308952 CTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTGCCAGTTAAGGTTTTCAC 309011 Query 94996 AAAGATCTGCAT 95007 ||| |||||||| Sbjct 309012 AAAAATCTGCAT 309023 Score = 134 bits (148), Expect = 1e-26 Identities = 181/252 (72%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 94756 TAACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGA 94815 ||| | |||| ||| ||| || ||||||||||||| | |||||||||| || || Sbjct 308088 TAATGTTTTTACAAAGATTTGCATCCCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGA 308147 Query 94816 TTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAA 94875 ||||||||| | ||| ||||| || ||| ||| || | ||| || ||| |||| Sbjct 308148 TTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAA 308207 Query 94876 GATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGC 94935 ||| | ||| ||||| ||||| ||||| ||||| ||||| | || || || || || Sbjct 308208 GATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATT 308267 Query 94936 GCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCAC 94995 ||| ||||| | | | || || || | ||||| ||||||||||| | ||||| || Sbjct 308268 CTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTAC 308327 Query 94996 AAAGATCTGCAT 95007 |||||| ||||| Sbjct 308328 AAAGATTTGCAT 308339 Score = 134 bits (148), Expect = 1e-26 Identities = 181/252 (72%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 94756 TAACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGA 94815 ||| | |||| ||| ||| || ||||||||||||| | |||||||||| || || Sbjct 308316 TAATGTTTTTACAAAGATTTGCATCCCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGA 308375 Query 94816 TTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAA 94875 ||||||||| | ||| ||||| || ||| ||| || | ||| || ||| |||| Sbjct 308376 TTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAA 308435 Query 94876 GATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGC 94935 ||| | ||| ||||| ||||| ||||| ||||| ||||| | || || || || || Sbjct 308436 GATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATT 308495 Query 94936 GCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCAC 94995 ||| ||||| | | | || || || | ||||| ||||||||||| | ||||| || Sbjct 308496 CTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTAC 308555 Query 94996 AAAGATCTGCAT 95007 |||||| ||||| Sbjct 308556 AAAGATTTGCAT 308567 Score = 134 bits (148), Expect = 1e-26 Identities = 181/252 (72%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 94756 TAACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGA 94815 ||| | |||| ||| ||| || ||||||||||||| | |||||||||| || || Sbjct 308544 TAATGTTTTTACAAAGATTTGCATCCCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGA 308603 Query 94816 TTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAA 94875 ||||||||| | ||| ||||| || ||| ||| || | ||| || ||| |||| Sbjct 308604 TTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAA 308663 Query 94876 GATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGC 94935 ||| | ||| ||||| ||||| ||||| ||||| ||||| | || || || || || Sbjct 308664 GATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATT 308723 Query 94936 GCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCAC 94995 ||| ||||| | | | || || || | ||||| ||||||||||| | ||||| || Sbjct 308724 CTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTAC 308783 Query 94996 AAAGATCTGCAT 95007 |||||| ||||| Sbjct 308784 AAAGATTTGCAT 308795 Score = 129 bits (142), Expect = 5e-25 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833 ||| ||||| |||| ||||| | || ||||||| || ||||||||||| | |||||| Sbjct 307878 TTAGACTCCCCCTCGCAATCTTAGTACTAAGTGCAGGGTTGATTCCTTTTGAATGTTATA 307937 Query 94834 ATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893 ||| || ||| ||| || | ||| || ||| ||||||| | ||| ||||| || Sbjct 307938 ATCAGACAGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTC 307997 Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG 94953 ||| ||||| ||||| ||||| | || || || || || ||| ||||| | | | Sbjct 307998 TGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGG 308057 Query 94954 GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | ||||| ||||||||||| | ||||| |||||||| ||||| Sbjct 308058 TTCAACTTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308111 >seq221 Length=486136 Score = 125 bits (138), Expect = 6e-24 Identities = 159/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGG 94850 ||||| || | || | |||||| || ||||| | ||| |||||| | ||| || | Sbjct 79268 CGCAAAACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAAAGAGTACGTCCG 79327 Query 94851 AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||||||| |||||||| ||||||| |||| |||||||||||| || || || |||| Sbjct 79328 --TCCTCCAATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCCTCTT 79385 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | |||||| || || || | | ||| || | | ||||| || | || | Sbjct 79386 TGTCTTGAATTTTGGCTTTAACATTTTCAATAGTATCCGAAGGTTCGACTTCCAAAGTTA 79445 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| ||||||||||| ||||| ||||| |||||||| Sbjct 79446 TGGTCTTTCCAGTAAGCGTTTTTACAAAAATCTGCAT 79482 Score = 100 bits (110), Expect = 3e-16 Identities = 166/238 (70%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 94772 TTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTA 94831 ||| | | ||| ||||| | || | || || ||||| ||||| ||||| || | ||| Sbjct 78335 TTTCAAATTCCGCCTCTGAGACGGAGAACTAAATGCAAGGTAGACTCCTTCTGGATGTTG 78394 Query 94832 TAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCT 94889 || || | ||||| | || |||||||| || || ||||||| | | || | Sbjct 78395 TAGTCAG--AAAGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTT 78452 Query 94890 GATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAG 94949 | |||||||| || ||||| ||||| | ||||||||||| || | | ||||| | Sbjct 78453 GGTCTGGAGGGATGCCTTCCTTGTCTTGGATTTTTGCCTTTACATTCTCTATGGTGTCGG 78512 Query 94950 CGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | ||||| || | ||||||||||| ||||| | || || || ||||||||||| Sbjct 78513 AGGGTTCGACTTCTAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 78570 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868 ||||||||||| || | ||| || ||| | || || || ||| || | ||||| | Sbjct 79058 GTAGATTCCTTCTGGATGTTGTAGTCG--GAGAGAGTACGACCATCTTCTAATTGTTTAC 79115 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 | | || || || | ||| |||||||| || || ||||| ||||| | ||||| |||| Sbjct 79116 CAGCGAAAATCAAACGTTGTTGATCTGGGGGGATGCCTTCCTTGTCTTGGATTTTAGCCT 79175 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 | ||| | | ||| |||| | || || || | ||| || ||||| || ||||| | Sbjct 79176 TCACGTTTTCAATAGTATCAGAAGGCTCTACCTCTAACGTTATAGTTTTACCCGTAAGGG 79235 Query 94989 TTTTCACAAAGATCTGCAT 95007 |||| |||||||||||||| Sbjct 79236 TTTTAACAAAGATCTGCAT 79254 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || ||||||| | | || || || ||||| |||||||||||| Sbjct 78644 TCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGGATACCTTCTTTG 78703 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| || || || | | ||||| | | ||||| || | |||||| Sbjct 78704 TCTTGGATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGACTTCTAGGGTGATG 78763 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| | || || || ||||||||||| Sbjct 78764 GTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 78798 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || ||||||| | | || || || ||||| |||||||||||| Sbjct 78872 TCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGGATACCTTCTTTG 78931 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| || || || | | ||||| | | ||||| || | |||||| Sbjct 78932 TCTTGGATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGACTTCTAAGGTGATG 78991 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| | || || || ||||||||||| Sbjct 78992 GTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 79026 >seq64 Length=1946208 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| | || |||||| | ||||| |||||||||||||| | || || ||| Sbjct 785701 CCTCCTCTAAGTCTCAACACAAGATGCAAGGTAGATTCCTTTTGAATATTGTAGTCGG-- 785758 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 ||| || || ||| |||| |||||||| | || || |||| ||||||||||| | Sbjct 785759 ATAAGGTACGACCATCTTCCAATTGTTTTCCAGCGAATATCAATCGCTGCTGATCTGGTG 785818 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||||||||| ||||| | || || ||||| || ||| ||||||| | || | Sbjct 785819 GAATACCTTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCAGAGGCCTCAA 785878 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | || |||||||| || || || || || || || |||||||| Sbjct 785879 CCTCTAGGGTAATGGTTTTACCCGTTAGGGTCTTAACGAAAATCTGCAT 785927 >seq148 Length=419512 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 94883 CTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACA 94942 || ||||| || ||||| || || |||||||| | ||||| || ||||| ||| Sbjct 143737 CTCTGCTGGTCCGGAGGGATTCCCTCTTTGTCTTGTATTTTAGCTTTGACATTCTCGATG 143796 Query 94943 GTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATC 95002 ||||| | | | ||||| || | ||||||||||| || || || |||||||| || ||| Sbjct 143797 GTGTCCGAGGGTTCGACCTCGAGGGTGATGGTTTTCCCCGTGAGGGTTTTCACGAAAATC 143856 Query 95003 TGCAT 95007 ||||| Sbjct 143857 TGCAT 143861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448260968362200