Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_006633.1 Length=27346 Score E Sequences producing significant alignments: (Bits) Value seq35 542 5e-150 >seq35 Length=1540723 Score = 542 bits (600), Expect = 5e-150 Identities = 448/542 (83%), Gaps = 17/542 (3%) Strand=Plus/Plus Query 9993 TACTTCTTTCTTCATGTTTTTTCTTAAACTCAACAAATAACTCATTCTGAATTTATAATA 10052 ||||||||||||||| ||| ||||||||||||||||| |||||||| ||||||||||||| Sbjct 46422 TACTTCTTTCTTCATTTTTGTTCTTAAACTCAACAAACAACTCATTTTGAATTTATAATA 46481 Query 10053 TTTT-TTCCGAGATATTGGCTGAGATACTCAGCAAATTGTATTTTATTCCTTTTCATTGT 10111 ||| |||||| | |||||||||||||||||| |||||||||||||||||||||| |||| Sbjct 46482 CTTTATTCCGAAAAATTGGCTGAGATACTCAGTAAATTGTATTTTATTCCTTTTCGTTGT 46541 Query 10112 ATTAGCAATCAAAAATAAAAttt-ttttATCTCTTTGTTAAGAAATATAACTAATATTGG 10170 | |||||||||||||||||||| |||||| ||| | |||||||| ||||||||| | Sbjct 46542 AA-AGCAATCAAAAATAAAATTTATTTTATTGTTTTATACAGAAATATGACTAATATTTG 46600 Query 10171 AATTTTTTGCGTTTATTCAGCAGGTAATCCTATAGTTAACAACGGAAAT------GCACC 10224 ||||| |||| || |||||| ||||||||||||||| || || |||| ||||| Sbjct 46601 AATTTCTTGCTATTTTTCAGCGGGTAATCCTATAGTTCACGACAGAAACTCGGACGCACC 46660 Query 10225 GGAGGCGCCTCCACGTGAAATCATTCAATATCTCAACTGCTCTGACTTGCACAAGTATTC 10284 ||||||||||| |||| | || ||||||| ||||||||||||||| ||| || ||||| Sbjct 46661 GGAGGCGCCTCGACGTCATAT---TCAATATATCAACTGCTCTGACTGGCAAAAATATTC 46717 Query 10285 ATTGGCAGAAGATACCATTCAACTAAGTCATAGCATCATTGTGGACGCGTCCAACCCTTG 10344 |||| || ||| ||||||| |||||||| | ||||||| |||| |||||||| |||| Sbjct 46718 ATTGATGGACGATGCCATTCAGCTAAGTCACACCATCATTTTGGAAGCGTCCAAAACTTG 46777 Query 10345 CATCATGAAAGCGTCGGTAATTATTCTGGAAAACAATATTTTTCCCGGTTACGGATATGC 10404 |||||||||||| ||||||||||||||| ||||||| ||||| ||||| | |||| Sbjct 46778 CATCATGAAAGCATCGGTAATTATTCTGAGAAACAATCAATTTCCGGGTTATCAACATGC 46837 Query 10405 TTATAACATAACTGGAAAGAGAATAGTAATGGATGGTAATGAATTCAAAGGACCAGAACA 10464 || ||||||||||||||| ||| ||||| || |||||||||| |||||||||||| Sbjct 46838 TTTCAACATAACTGGAAAGGAAATCATAATGTTTGATAATGAATTCGGAGGACCAGAACA 46897 Query 10465 AAATTATTACATAGTTGGAGTTAATATACTTCTAGTTAATAATACATATGAAGGCAACCT 10524 || |||| ||||||| | || |||||| ||| |||||||||||| ||||| |||| Sbjct 46898 CAA-----ACATTGTTGGAGATGATGTACTTCCAGTAAATAATACATATCAAGGCCACCT 46952 Query 10525 CC 10526 || Sbjct 46953 CC 46954 Score = 526 bits (582), Expect = 4e-145 Identities = 446/551 (81%), Gaps = 21/551 (4%) Strand=Plus/Plus Query 12978 ACTTCTTTCTTTATTGTTTTTCTTAAATTAAACTTAACAAATAACTCATTTTGAATTTAT 13037 ||||||||||| ||| || |||||||| || |||||| |||||||||||||||||| Sbjct 46423 ACTTCTTTCTTCATTTTTGTTCTTAAA-----CTCAACAAACAACTCATTTTGAATTTAT 46477 Query 13038 AATATTTT-TTCCGAGAAATTGGCTGAGATACTCAGTAAATTGTATTTTATTTCTTTTCG 13096 |||| ||| |||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 46478 AATACTTTATTCCGAAAAATTGGCTGAGATACTCAGTAAATTGTATTTTATTCCTTTTCG 46537 Query 13097 TTGTATTAGCAATCAAANNNNNNNNNNNNNNNATTGTTTTATTAAGAAATATAACTAATA 13156 ||||| |||||||||| |||||||||| |||||||| ||||||| Sbjct 46538 TTGTAA-AGCAATCAAAAATAAAATTTATTTTATTGTTTTATACAGAAATATGACTAATA 46596 Query 13157 TTGGAATTTTTTGCATTTATTCAGCAGGTAATCCTATAGTTAACAACAGAAAT------G 13210 || |||||| |||| || |||||| ||||||||||||||| || ||||||| | Sbjct 46597 TTTGAATTTCTTGCTATTTTTCAGCGGGTAATCCTATAGTTCACGACAGAAACTCGGACG 46656 Query 13211 CACCGGAGGCGCCTCCACGTGAAATCATTCAATATCTCAACTGCTCTGACTTGCACAAGT 13270 ||||||||||||||| |||| | || ||||||| ||||||||||||||| ||| || | Sbjct 46657 CACCGGAGGCGCCTCGACGTCATAT---TCAATATATCAACTGCTCTGACTGGCAAAAAT 46713 Query 13271 ATTCATTGGCAGAAGATACCATTCAACTAAGTTATAGCATCATTTTGGCCGCGTCCAACC 13330 |||||||| || ||| ||||||| |||||| | | ||||||||||| |||||||| Sbjct 46714 ATTCATTGATGGACGATGCCATTCAGCTAAGTCACACCATCATTTTGGAAGCGTCCAAAA 46773 Query 13331 CTTGCATCATGAAAGCGTCGGTAATTATTCTGGAAAACAATATTTTTCCCGGTTACGGAT 13390 |||||||||||||||| ||||||||||||||| ||||||| ||||| ||||| | Sbjct 46774 CTTGCATCATGAAAGCATCGGTAATTATTCTGAGAAACAATCAATTTCCGGGTTATCAAC 46833 Query 13391 ATGCTTATAACATAACTGGAAAGAGAATAGTAATGGTTGCTAATGAATTCAAAGGACCAG 13450 |||||| ||||||||||||||| ||| ||||| ||| |||||||||| |||||||| Sbjct 46834 ATGCTTTCAACATAACTGGAAAGGAAATCATAATGTTTGATAATGAATTCGGAGGACCAG 46893 Query 13451 AACAAAATCATTACATAGTTGGAGATAATGTACTTCTAGTTAATAATACATATCAAGGCA 13510 |||| || |||| ||||||||| ||||||||| ||| |||||||||||||||||| Sbjct 46894 AACACAA-----ACATTGTTGGAGATGATGTACTTCCAGTAAATAATACATATCAAGGCC 46948 Query 13511 ACCTCCAAGTT 13521 |||||| |||| Sbjct 46949 ACCTCCGAGTT 46959 Score = 473 bits (524), Expect = 2e-129 Identities = 325/369 (88%), Gaps = 12/369 (3%) Strand=Plus/Minus Query 13513 CTCCAAGTTCATGAAGTAGCGGGATATGAAGTCACTGCATTCTACAATGTATTTGACGGT 13572 |||||||||||||||||||| |||||||| |||||||| ||| | ||||||||||| ||| Sbjct 47311 CTCCAAGTTCATGAAGTAGCAGGATATGACGTCACTGCGTTCCAAAATGTATTTGATGGT 47252 Query 13573 AAATACAGAGTCCATCAGTACGCAGCAACTAGTATCCTGGTATTTGATAACGAATCTAAA 13632 ||||||||||||| || ||||||||||| ||||||||||| |||||||||||||| ||| Sbjct 47251 GAATACAGAGTCCACCAATACGCAGCAACCAGTATCCTGGTGTTTGATAACGAATCCAAA 47192 Query 13633 GGAAATCCCTTTGATGTTATACTTACGGAAAATCCCCCGAACTTAACGTATGGTTTGTAC 13692 ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 47191 GGAAATCAGTTTGATGTTATACTTACGGAAAATCCCCCGAACTTTACGTATGGTTTGTAC 47132 Query 13693 CCTAACGTTCTGTCAAATTATGAAACTGGAGCCTTTAATAATGTAAAACTACAAACAGAA 13752 ||||||||||||||||||||||||||||||||||| | | |||||| || |||||||||| Sbjct 47131 CCTAACGTTCTGTCAAATTATGAAACTGGAGCCTTAACTGATGTAAGACCACAAACAGAA 47072 Query 13753 TACAGTTTAGGCAAAATGAGTCAAGAAACGTTCGACTTAACGCCTATGAGCGTTACCAGA 13812 |||||||||||||||||||||| ||||||||||||||||||||| |||| || Sbjct 47071 TACAGTTTAGGCAAAATGAGTCCAGAAACGTTCGACTTAACGCCCATGAACG-------- 47020 Query 13813 TTTCTAGAAGAAGTGAAGTTTGGATCAAAAATTAATCGTCCTGTAGGTGCTACTATCGTT 13872 ||||||||||||| ||||||| |||||||| ||||||| ||||||| ||| |||| Sbjct 47019 ----AAGAAGAAGTGAAGCTTGGATCCAAAATTAAACGTCCTGCAGGTGCTCCTACCGTT 46964 Query 13873 GGAAAACTC 13881 ||||||| Sbjct 46963 AAAAAACTC 46955 Score = 471 bits (522), Expect = 7e-129 Identities = 387/468 (83%), Gaps = 16/468 (3%) Strand=Plus/Plus Query 6929 CTGAGATACTCAGCAAATTGTATTTTATTCCTTTTCATTGTATTAGCAATCAAAAATAAA 6988 ||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 46501 CTGAGATACTCAGTAAATTGTATTTTATTCCTTTTCGTTGTAA-AGCAATCAAAAATAAA 46559 Query 6989 Attt-ttttATCTCTTTGTTAAGAAATATAACTAATATTGGAATTTTTTGCGTTTATTCA 7047 |||| |||||| ||| | |||||||| ||||||||| |||||| |||| || |||| Sbjct 46560 ATTTATTTTATTGTTTTATACAGAAATATGACTAATATTTGAATTTCTTGCTATTTTTCA 46619 Query 7048 GCAGGTAATTCTATAGTTAACAACAGAAAT------GCACCGGAGGCGCCTCCACGTGAA 7101 || |||||| |||||||| || ||||||| |||||||||||||||| |||| | Sbjct 46620 GCGGGTAATCCTATAGTTCACGACAGAAACTCGGACGCACCGGAGGCGCCTCGACGTCAT 46679 Query 7102 ATCATTCAATATCTCAACTGCTCTGACTTGCACAAGTATTCATTGGCAGAAGATACCATT 7161 || ||||||| ||||||||||||||| ||| || ||||||||| || ||| ||||| Sbjct 46680 AT---TCAATATATCAACTGCTCTGACTGGCAAAAATATTCATTGATGGACGATGCCATT 46736 Query 7162 CAACTAAGTCATAGCATCATTGTGGACGCGTCCAACCCTTGCATCATGAAAGCGTCGGTA 7221 || |||||||| | ||||||| |||| |||||||| |||||||||||||||| |||||| Sbjct 46737 CAGCTAAGTCACACCATCATTTTGGAAGCGTCCAAAACTTGCATCATGAAAGCATCGGTA 46796 Query 7222 ATTATTCTGAAAAACAATATTTTTCCTGGTTACGGATATGCTTATAACATAACTGGAAAG 7281 |||||||||| ||||||| ||||| ||||| | |||||| ||||||||||||||| Sbjct 46797 ATTATTCTGAGAAACAATCAATTTCCGGGTTATCAACATGCTTTCAACATAACTGGAAAG 46856 Query 7282 AGAATAGTAATGGTTGATAATGAATTCAAAGGACCAGAACAAAATCATTACATAGTTGGA 7341 ||| ||||| |||||||||||||| |||||||||||| || |||| |||||| Sbjct 46857 GAAATCATAATGTTTGATAATGAATTCGGAGGACCAGAACACAA-----ACATTGTTGGA 46911 Query 7342 GATAATGTACTTCTAGTTAATAATACATATCAAGGCAACCTCCAAGTT 7389 ||| ||||||||| ||| |||||||||||||||||| |||||| |||| Sbjct 46912 GATGATGTACTTCCAGTAAATAATACATATCAAGGCCACCTCCGAGTT 46959 Score = 300 bits (332), Expect = 3e-77 Identities = 291/373 (78%), Gaps = 12/373 (3%) Strand=Plus/Minus Query 7381 CTCCAAGTTCATGAAGTAGCGGGATATGAAGTCACTGCGTTTCACAATGTATATGATAGT 7440 |||||||||||||||||||| |||||||| ||||||||||| || ||||||| |||| || Sbjct 47311 CTCCAAGTTCATGAAGTAGCAGGATATGACGTCACTGCGTTCCAAAATGTATTTGATGGT 47252 Query 7441 ATATGCAGAATCCATCAATATGCAGGAACTAGTGTACTGGTGTTCGATAATGAATCTAGA 7500 || |||| |||| ||||| |||| ||| ||| | |||||||| ||||| ||||| | | Sbjct 47251 GAATACAGAGTCCACCAATACGCAGCAACCAGTATCCTGGTGTTTGATAACGAATCCAAA 47192 Query 7501 GGAAATCCGTTTGATGTCTTACTTCTGGAAAAACCCGTGAACTTAATGCATGAATTGTAT 7560 ||||||| ||||||||| ||||| |||||| ||| |||||| | | ||| ||||| Sbjct 47191 GGAAATCAGTTTGATGTTATACTTACGGAAAATCCCCCGAACTTTACGTATGGTTTGTAC 47132 Query 7561 CCTAACGATCTGTCAAATTATAAAAGTGGAGCCTTTAATGATATAAAAGAACATACAGAA 7620 ||||||| ||||||||||||| ||| ||||||||| | |||| ||| | ||| |||||| Sbjct 47131 CCTAACGTTCTGTCAAATTATGAAACTGGAGCCTTAACTGATGTAAGACCACAAACAGAA 47072 Query 7621 TACTCTTTAGGTAAAATTGGTTACGCAACGCTCGATTTAACGACTGTAAACATGCAAAGA 7680 ||| |||||| ||||| || | |||| |||| |||||| | |||| || || Sbjct 47071 TACAGTTTAGGCAAAATGAGTCCAGAAACGTTCGACTTAACGCC------CATG-AACGA 47019 Query 7681 TTTCTACAAGATGTGAAGTTTGGATTAAAAATTAAACGTCCTGAAAGTGCTGCTATCGTT 7740 | |||| |||||| |||||| |||||||||||||||| | ||||| ||| |||| Sbjct 47018 -----AGAAGAAGTGAAGCTTGGATCCAAAATTAAACGTCCTGCAGGTGCTCCTACCGTT 46964 Query 7741 CAAAGATTCGAAG 7753 ||| | ||| || Sbjct 46963 AAAAAACTCGGAG 46951 Score = 141 bits (156), Expect = 2e-29 Identities = 124/154 (81%), Gaps = 9/154 (6%) Strand=Plus/Plus Query 25143 CATACTACATATCAGTAATCTGATTAGTTAGGGATGTTTCGTATTTAAGTGTGTAAATCC 25202 |||| || |||||||||||||||||||||||||| ||| || ||||| |||||||||| Sbjct 47321 CATA-TATATATCAGTAATCTGATTAGTTAGGGAGGTTATGTGCTTAAGGGTGTAAATCC 47379 Query 25203 ACTAAGTTTTTCAGCAC--------CCAGTATAACAACTACCGTTGATACACACACGGAA 25254 |||||||| || |||| | |||||||||| |||| |||||||| ||||||| Sbjct 47380 GCTAAGTTTGTCTGCACCTAGTATACTAGTATAACAAGTACCCTTGATACATACACGGAG 47439 Query 25255 AGTCACTATGTAAGAAATGAGAGCTCTGAGTTAA 25288 ||| ||||||| ||||| || |||||| ||| || Sbjct 47440 AGTTACTATGTGAGAAACGAAAGCTCTCAGTGAA 47473 Score = 138 bits (152), Expect = 2e-28 Identities = 102/118 (86%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 26189 TTTTTAGGACGGGAAGCGAGAACTTAAGCAAACGTTAGTGACGTCACACCGAATTCAAAA 26248 |||| || ||| |||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 43349 TTTTCAGAACGAGAAGCGAGAACTCGAGCAAACGTTAGTGACGTCACACCGAGTTCAAAA 43408 Query 26249 CAAAAACCACCCCGAGTAAATGACCTTGACTATACATTCGCTTACATAAGGGGTTGAT 26306 | ||| |||||||||| ||| |||||||||||| |||| ||| |||||||||||| Sbjct 43409 C--AAAGCACCCCGAGTCGATGCCCTTGACTATACGTTCGGTTAGGTAAGGGGTTGAT 43464 Score = 138 bits (152), Expect = 2e-28 Identities = 161/215 (75%), Gaps = 13/215 (6%) Strand=Plus/Minus Query 10559 GAACTTAATGCATGAATTGTATCCTAACGATCTGTCAAATTATAAAAGTGGAGCCTTTAA 10618 |||||| | | ||| ||||| ||||||| ||||||||||||| ||| ||||||||| | Sbjct 47153 GAACTTTACGTATGGTTTGTACCCTAACGTTCTGTCAAATTATGAAACTGGAGCCTTAAC 47094 Query 10619 TGATATAAAAGAACATACAGAATACTCTTTAGGTAAAATG-GTTACGCAACACTCGATTT 10677 |||| ||| | ||| ||||||||| |||||| |||||| || | ||| |||| || Sbjct 47093 TGATGTAAGACCACAAACAGAATACAGTTTAGGCAAAATGAGTCCAGAAACGTTCGACTT 47034 Query 10678 AACGACTGTAAACATGCAAAGATTTCTACAAGATGTGAAGTTTGGATTAAAAATTAAACG 10737 |||| | |||| || || | |||| |||||| |||||| ||||||||||| Sbjct 47033 AACGCC------CATG-AACGA-----AGAAGAAGTGAAGCTTGGATCCAAAATTAAACG 46986 Query 10738 TCCTGAAAGTGCTGCTATCGTTCAAAGATTCGAAG 10772 ||||| | ||||| ||| |||| ||| | ||| || Sbjct 46985 TCCTGCAGGTGCTCCTACCGTTAAAAAACTCGGAG 46951 Score = 138 bits (152), Expect = 2e-28 Identities = 108/129 (84%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 25964 TATAAATCACACTGGGtttttttGAAGGTTATAATTGACACGCAATAAAGGCGTGATAAA 26023 || |||| | | | | ||||||||| |||| ||| |||||||| ||| || ||||||| Sbjct 47493 TAGAAATAAAATTAGTTTTTTTTGACGGTTTTAACTGACACGCGGTAAGGGTATGATAAA 47552 Query 26024 ATAATTTAAAAACAAACAAGtttttttGGCATTTAGAATTCTAATTTTCGACAACAAAAA 26083 |||||| |||||||||| ||||||||| || ||| ||||||||| |||||||||| |||| Sbjct 47553 ATAATTAAAAAACAAACGAGTTTTTTTAGCGTTTGGAATTCTAAATTTCGACAACGAAAA 47612 Query 26084 GACTCCTGG 26092 ||||||||| Sbjct 47613 GACTCCTGG 47621 Score = 127 bits (140), Expect = 4e-25 Identities = 87/97 (90%), Gaps = 1/97 (1%) Strand=Plus/Plus Query 26420 ATTAATTGATTTGGCAATTATAGGGGTGTTCTATTAAGGGTGAATTTAACTATTGAATAT 26479 ||| ||||||||||||||||| |||||||| ||||||||| ||||| ||||||||||||| Sbjct 43463 ATTGATTGATTTGGCAATTATTGGGGTGTTTTATTAAGGG-GAATTCAACTATTGAATAT 43521 Query 26480 ATTTCCCACTATCGAGATATTAGTGCAGAATTATTTA 26516 | | | |||||| ||||||||||||||||||||||| Sbjct 43522 AGTCCTTACTATCAAGATATTAGTGCAGAATTATTTA 43558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 87383348713965