Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_006635.1 Length=29874 Score E Sequences producing significant alignments: (Bits) Value seq639 93.3 8e-15 seq80 89.7 1e-13 >seq639 Length=14582 Score = 93.3 bits (102), Expect = 8e-15 Identities = 157/226 (69%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 14455 ACCTGAGTCATATTTGAGGTAGGCCATGTAGAACCTCCATGAATCATTTGGTCGCTCTTT 14514 || ||| |||||||| | | ||||| || | ||||| ||||| ||| ||| || Sbjct 10099 ACTTGATTCATATTTAACGATAGCCATATAACAGCTCCACTTGTCATTGTGTCTCTCCTT 10040 Query 14515 CCTTCTAACGCGTTCTCTCGTTTCCGAGGGATCTTCGTTGTTTGGGTAAGTCACAACTAT 14574 ||| ||||||| ||||| || | | |||||||||| || ||||| | |||| || Sbjct 10039 TCTTTTAACGCGATCTCTGGTGTTGAAAGGATCTTCGTCTTTAGGGTACG---CAACGAT 9983 Query 14575 ---CTTCTGATTTGGGGATTTTCGAAGTATTATCCAGCAATAGGGCACACACACGTAGTC 14631 |||||||| | | ||| || | ||| | ||| | ||||| || |||||||| Sbjct 9982 GGCCTTCTGATCCGTCGCTTTACGTACTATCAGCCAAGCCGACGGCACGCATACGTAGTC 9923 Query 14632 ATCAATGTTCTCGAAAGGTAACTCTGCGAACTGAACTACATAAAAC 14677 |||||| || ||||| || ||| ||||||||| || ||||| Sbjct 9922 ATCAATACCTTCAAAAGGCAATTCTATGAACTGAACGACGGAAAAC 9877 Score = 89.7 bits (98), Expect = 1e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 11201 TGACGTAAACACCAGTTCGAGGTATGAGCTCGACGAGTCCTCGCTTATTCTCTCGGTACT 11260 ||||||||||| || || |||| ||||| || ||||||||| || ||| ||| |||| Sbjct 12364 TGACGTAAACAGCACTTTGAGGCATGAGTTCTACGAGTCCTGGCAGATTGGTTCGATACT 12305 Query 11261 TTAGAGTCCACTTGGTATCATTTGGATCATATTCTGGTGGCAGA 11304 | | ||||| || ||||||| ||||||||||| ||||| ||| Sbjct 12304 TCAATGTCCATTTTGTATCATGAGGATCATATTCCGGTGGTAGA 12261 >seq80 Length=626719 Score = 89.7 bits (98), Expect = 1e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 11201 TGACGTAAACACCAGTTCGAGGTATGAGCTCGACGAGTCCTCGCTTATTCTCTCGGTACT 11260 ||||||||||| || || |||| ||||| || ||||||||| || ||| ||| |||| Sbjct 504443 TGACGTAAACAGCACTTTGAGGCATGAGTTCTACGAGTCCTGGCAGATTGGTTCGATACT 504384 Query 11261 TTAGAGTCCACTTGGTATCATTTGGATCATATTCTGGTGGCAGA 11304 | | ||||| || ||||||| ||||||||||| ||||| ||| Sbjct 504383 TCAATGTCCATTTTGTATCATGAGGATCATATTCCGGTGGTAGA 504340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95469083321640