Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_006645.1 Length=21388 Score E Sequences producing significant alignments: (Bits) Value seq3509 80.6 4e-11 >seq3509 Length=436 Score = 80.6 bits (88), Expect = 4e-11 Identities = 119/165 (72%), Gaps = 3/165 (2%) Strand=Plus/Minus Query 2773 AATTCCCGGAACTGCAGGACAAATATTTATAATTTTCCCAGAGGGATGAAAATACGGTCA 2832 || || || || || ||||| ||||||||||||||| ||| | | |||||||||| | Sbjct 197 AACTCTCGAAATTGTAGGACCAATATTTATAATTTTTACAGGGAGCTGAAAATACGCCCG 138 Query 2833 AAAACGGGTACTTTGACTTGTGTAAGCCACGCCTCCTTTGGACACTttattaatgaaaat 2892 |||||||| ||| || || | |||||| |||| | | ||||| || |||| Sbjct 137 AAAACGGGAACTCTGGTTTCCACACGCCACG-AACCTTCGAGCGCTTTA-AAAAAAAAAA 80 Query 2893 tatttaaaaatattacatataaaatttaagaaatgaaaaaaatca 2937 |||||||| |||||| || | |||||| |||||||| ||| Sbjct 79 TATTTAAACATATTAAATGT-TGATTTAAACTTTGAAAAAATTCA 36 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 68318938020135