Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_006646.1 Length=31972 Score E Sequences producing significant alignments: (Bits) Value seq320 86.0 1e-12 seq367 84.2 4e-12 >seq320 Length=175372 Score = 86.0 bits (94), Expect = 1e-12 Identities = 81/103 (79%), Gaps = 9/103 (9%) Strand=Plus/Plus Query 23702 CAGTCAAAAGTTATTGCAGTTTGAAAATTCATAAAATAAGTAGTGTTGGATGAAACTTCT 23761 || |||||||||||| | |||||||||||| |||||| ||||| ||||||||||| Sbjct 21838 CATTCAAAAGTTATTACGGTTTGAAAATTCCAAAAATA----GTGTTCCATGAAACTTCT 21893 Query 23762 ATCAGACTTTTGAGCTTAAATTAAAAAGCTCAAAAGCGTAGAA 23804 |||||||||| |||| | | | |||||||| || ||||| Sbjct 21894 ATCAGACTTTCGAGC-----TGAGAGAGCTCAAATGCATAGAA 21931 >seq367 Length=136493 Score = 84.2 bits (92), Expect = 4e-12 Identities = 92/122 (75%), Gaps = 9/122 (7%) Strand=Plus/Minus Query 23702 CAGTCAAAAGTTATTGCAGTTTGAAAATTCATAAAATAAGTAGTGTTGGATGAAACTTCT 23761 || |||||||||||| |||||||||||| |||||| ||||| ||||||||||| Sbjct 24778 CATTCAAAAGTTATTATGGTTTGAAAATTCCAAAAATA----GTGTTCTATGAAACTTCT 24723 Query 23762 ATCAGACTTTTGAGCTTAAATTAAAAAGCTCAAAAGCGTAGAACAGCTATCTTTTTGAGC 23821 |||||||||| |||| | | | |||||||| || ||||| ||| | ||||| | Sbjct 24722 ATCAGACTTTCGAGC-----TGAGAGAGCTCAAATGCATAGAAATATTATTTCTTTGAAC 24668 Query 23822 TC 23823 || Sbjct 24667 TC 24666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 102182253210660