Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_006647.1 Length=8785 Score E Sequences producing significant alignments: (Bits) Value seq13 297 1e-76 seq247 295 4e-76 seq179 295 4e-76 seq709 291 5e-75 seq545 291 5e-75 seq33 291 5e-75 seq234 279 3e-71 seq121 279 3e-71 seq140 264 6e-67 seq442 260 8e-66 seq135 260 8e-66 seq1258 259 3e-65 seq223 257 9e-65 seq51 239 3e-59 seq64 226 2e-55 seq1 210 1e-50 seq367 197 8e-47 seq127 196 3e-46 seq320 179 2e-41 seq3 109 3e-20 seq56 100 2e-17 >seq13 Length=1808754 Score = 297 bits (328), Expect = 1e-76 Identities = 216/248 (87%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 226 CATAAATGACGGACAGGAAAAttttttgacctattttgatgttttttttCGTTTCTAGTG 285 |||| |||| |||||||||| || |||||||||||||||| ||||||| |||||||| || Sbjct 473552 CATACATGATGGACAGGAAATTTATTTGACCTATTTTGATATTTTTTTCCGTTTCTATTG 473611 Query 286 CACTAAATCAATTTTTGAAAAGTGTCAAATTAATCTCTATTAAATTATCTTGACAATAGT 345 |||||||| ||| ||| |||| | |||||||||| || || |||||| ||||||||| Sbjct 473612 CACTAAATTAATATTTAGCAAGTATATAATTAATCTCCAT-AAGTTATCTCGACAATAGT 473670 Query 346 ATGCAAAATATCTTGAATCCGTGAACTAACAAGACTATAATGATGAAAATAGTTGCCGAA 405 |||||||||||||||| ||||| |||||||||| ||||||| | |||||||||||| || Sbjct 473671 ATGCAAAATATCTTGATTCCGTTAACTAACAAGGCTATAATACTAAAAATAGTTGCCAAA 473730 Query 406 ATGAGGTGaaaaaaa-TTTTTCGATCGTAAAGCACTCTCTGATGTTTCTCATCATGAGTC 464 |||||| |||||||| |||||||| ||||||||||||||||||| ||| ||||||||||| Sbjct 473731 ATGAGGCGAAAAAAATTTTTTCGAACGTAAAGCACTCTCTGATGATTCGCATCATGAGTC 473790 Query 465 ATGCAATA 472 ||||||| Sbjct 473791 TTGCAATA 473798 Score = 284 bits (314), Expect = 7e-73 Identities = 212/247 (86%), Gaps = 1/247 (0%) Strand=Plus/Plus Query 226 CATAAATGACGGACAGGAAAAttttttgacctattttgatgttttttttCGTTTCTAGTG 285 |||| |||| |||||||| ||||||||||||||||||| ||||||| |||||||| || Sbjct 480427 CATACATGATGGACAGGATTTTTTTTTGACCTATTTTGATATTTTTTTCCGTTTCTATTG 480486 Query 286 CACTAAATCAATTTTTGAAAAGTGTCAAATTAATCTCTATTAAATTATCTTGACAATAGT 345 |||||||| ||| ||| |||| | |||||||||| || || |||||| ||||||||| Sbjct 480487 CACTAAATTAATATTTAGCAAGTATATAATTAATCTCCAT-AAGTTATCTCGACAATAGT 480545 Query 346 ATGCAAAATATCTTGAATCCGTGAACTAACAAGACTATAATGATGAAAATAGTTGCCGAA 405 |||||||||||||||| ||||| |||||||||| ||||||| | |||||||||||| || Sbjct 480546 ATGCAAAATATCTTGATTCCGTTAACTAACAAGGCTATAATACTAAAAATAGTTGCCAAA 480605 Query 406 ATGAGGTGaaaaaaaTTTTTCGATCGTAAAGCACTCTCTGATGTTTCTCATCATGAGTCA 465 | |||| |||||||||| ||||||||||||| | ||| ||||| ||| |||||||||||| Sbjct 480606 AGGAGGCGAAAAAAATTATTCGATCGTAAAGAATTCTGTGATGCTTCGCATCATGAGTCA 480665 Query 466 TGCAATA 472 ||||||| Sbjct 480666 TGCAATA 480672 >seq247 Length=263828 Score = 295 bits (326), Expect = 4e-76 Identities = 216/251 (86%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 222 GTTCCATAAATGACGGACAGGAAAAttttttgacctattttgatgttttttttCGTTTCT 281 ||| |||| |||||||||||||| ||||||||||||||||||| ||||||| ||||||| Sbjct 109496 GTTTCATACATGACGGACAGGAATTTTTTTTGACCTATTTTGATATTTTTTTCCGTTTCT 109437 Query 282 AGTGCACTAAATCAATTTTTGAAAAGTGTCAAATTAATCTCTATTAAATTATCTTGACAA 341 | |||||||||| ||||||| ||| | |||||||||| |||||||||| | ||||| Sbjct 109436 ATTGCACTAAATTAATTTTTAGCAAGAATAGAATTAATCTCCATTAAATTATTTCGACAA 109377 Query 342 TAGTATGCAAAATATCTTGAATCCGTGAACTAACAAGACTATAATGATGAAAATAGTTGC 401 |||||||||||||||||||| ||| | ||| |||||| |||||| | ||||||||||| Sbjct 109376 TAGTATGCAAAATATCTTGATTCCATTAACAAACAAGGCTATAACACTAAAAATAGTTGC 109317 Query 402 CGAAATGAGGTGaaaaaaaTTTTTCGATCGTAAAGCACTCTCTGATGTTTCTCATCATGA 461 | |||||||| |||||||| ||||||||||||||||||||||||||| || |||||||| Sbjct 109316 CAAAATGAGGCGAAAAAAAATTTTCGATCGTAAAGCACTCTCTGATGCTTTGCATCATGA 109257 Query 462 GTCATGCAATA 472 || ||||||| Sbjct 109256 GTGCTGCAATA 109246 >seq179 Length=350167 Score = 295 bits (326), Expect = 4e-76 Identities = 218/252 (87%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 222 GTTCCATAAATGACGGACAGGAAAAttttttgacctattttgatgttttttttCGTTTCT 281 ||| |||| ||||||||||||| |||||||||||||||| | ||||||| | ||||| Sbjct 232761 GTTTCATACATGACGGACAGGATTTTTTTTTGACCTATTTTAACATTTTTTTCCTTTTCT 232702 Query 282 AGTGCACTAAATCAATTTTTGAAAAGTGTCAAATTAATCTCTATTAAATTATCTTGACAA 341 | |||||||||| ||||||| |||| | |||||||||| ||| |||||||| ||||| Sbjct 232701 ATTGCACTAAATTAATTTTTAGCAAGTATAGAATTAATCTCCATTTAATTATCTCGACAA 232642 Query 342 TAGTATGCAAAATATCTTGAATCCGTGAACTAACAAGACTATAATGATGAAAATAGTTGC 401 |||||||||||||||||||| ||||| |||||||||| ||||||| | ||||||||||| Sbjct 232641 TAGTATGCAAAATATCTTGATTCCGTTAACTAACAAGGCTATAAT-ACTAAAATAGTTGC 232583 Query 402 CGAAATGAGGTG-aaaaaaaTTTTTCGATCGTAAAGCACTCTCTGATGTTTCTCATCATG 460 | |||||||| | ||||||||||||||||||||||||| ||||||||| ||| ||||||| Sbjct 232582 CAAAATGAGGCGAAAAAAAATTTTTCGATCGTAAAGCATTCTCTGATGCTTCGCATCATG 232523 Query 461 AGTCATGCAATA 472 |||| ||||||| Sbjct 232522 AGTCGTGCAATA 232511 >seq709 Length=10720 Score = 291 bits (322), Expect = 5e-75 Identities = 218/252 (87%), Gaps = 3/252 (1%) Strand=Plus/Minus Query 222 GTTCCATAAATGACGGACAGGAAAAttttttgacctattttgatgttttttttCGTTTCT 281 ||| |||| |||||||||||||| ||||||||||||||||||| |||||| ||||||| Sbjct 4294 GTTTCATACATGACGGACAGGAAT-TTTTTTGACCTATTTTGATATTTTTTC-CGTTTCT 4237 Query 282 AGTGCACTAAATCAATTTTTGAAAAGTGTCAAATTAATCTCTATTAAATTATCTTGACAA 341 | |||||||||| ||||||| |||| | |||||||||| |||||||||||| ||||| Sbjct 4236 ATTGCACTAAATTAATTTTTAGCAAGTATAGAATTAATCTCCATTAAATTATCTCGACAA 4177 Query 342 TAGTATGCAAAATATCTTGAATCCGTGAACTAACAAGACTATAATGATGAAAATAGTTGC 401 |||||||||||||||||| ||||| |||||||||| ||||||| | ||||||||||| Sbjct 4176 TAGTATGCAAAATATCTTTTTTCCGTTAACTAACAAGGCTATAATACTAAAAATAGTTGC 4117 Query 402 CGAAATGAGGTGaaaaaaaTTTTTCGATCGTAAAGCACTCTCTGATGTTTCTCATCATG- 460 | |||||||| |||||||||||||||| ||||||||| ||||||| | ||| ||||||| Sbjct 4116 CAAAATGAGGCGAAAAAAATTTTTCGAACGTAAAGCAGTCTCTGACGATTCGCATCATGA 4057 Query 461 AGTCATGCAATA 472 |||| ||||||| Sbjct 4056 AGTCTTGCAATA 4045 Score = 259 bits (286), Expect = 3e-65 Identities = 211/252 (84%), Gaps = 3/252 (1%) Strand=Plus/Plus Query 222 GTTCCATAAATGACGGACAGGAAAAttttttgacctattttgatgttttttttCGTTTCT 281 ||| |||| |||||||||| | ||||| ||||||||||||| ||||||| ||||||| Sbjct 3284 GTTTCATACATGACGGACACGTTTGTTTTT-GACCTATTTTGATATTTTTTTCCGTTTCT 3342 Query 282 AGTGCACTAAATCAATTTTTGAAAAGTGTCAAATTAATCTCTATTAAATTATCTTGACAA 341 | |||||||||| ||| ||| ||| | |||||||||| || || |||||| || || Sbjct 3343 ATTGCACTAAATTAATATTTAGCAAGAATAGAATTAATCTCCAT-AAGTTATCTCGATAA 3401 Query 342 TAGTATGCAAAATATCTTGAATCCGTGAACTAACAAGACTATAATGATGAAAATAGTTGC 401 ||||||||||||||||||| ||||| |||||||||| ||||||| | ||||||||||| Sbjct 3402 AAGTATGCAAAATATCTTGATTCCGTTAACTAACAAGGCTATAATACTAAAAATAGTTGC 3461 Query 402 CGAAATGAGGTGaaaaaaaTTTTTCGATCGTAAAGCACTCTCTGATGTTTCTCATCATG- 460 | |||||||| |||||||||||||||| ||||||||| ||||||| | ||| ||||||| Sbjct 3462 CAAAATGAGGCGAAAAAAATTTTTCGAACGTAAAGCAGTCTCTGACGATTCGCATCATGA 3521 Query 461 AGTCATGCAATA 472 |||| ||||||| Sbjct 3522 AGTCTTGCAATA 3533 >seq545 Length=33278 Score = 291 bits (322), Expect = 5e-75 Identities = 218/252 (87%), Gaps = 3/252 (1%) Strand=Plus/Plus Query 222 GTTCCATAAATGACGGACAGGAAAAttttttgacctattttgatgttttttttCGTTTCT 281 ||| |||| |||||||||||||| ||||||||||||||||||| |||||| ||||||| Sbjct 27189 GTTTCATACATGACGGACAGGAAT-TTTTTTGACCTATTTTGATATTTTTTC-CGTTTCT 27246 Query 282 AGTGCACTAAATCAATTTTTGAAAAGTGTCAAATTAATCTCTATTAAATTATCTTGACAA 341 | |||||||||| ||||||| |||| | |||||||||| |||||||||||| ||||| Sbjct 27247 ATTGCACTAAATTAATTTTTAGCAAGTATAGAATTAATCTCCATTAAATTATCTCGACAA 27306 Query 342 TAGTATGCAAAATATCTTGAATCCGTGAACTAACAAGACTATAATGATGAAAATAGTTGC 401 |||||||||||||||||| ||||| |||||||||| ||||||| | ||||||||||| Sbjct 27307 TAGTATGCAAAATATCTTTTTTCCGTTAACTAACAAGGCTATAATACTAAAAATAGTTGC 27366 Query 402 CGAAATGAGGTGaaaaaaaTTTTTCGATCGTAAAGCACTCTCTGATGTTTCTCATCATG- 460 | |||||||| |||||||||||||||| ||||||||| ||||||| | ||| ||||||| Sbjct 27367 CAAAATGAGGCGAAAAAAATTTTTCGAACGTAAAGCAGTCTCTGACGATTCGCATCATGA 27426 Query 461 AGTCATGCAATA 472 |||| ||||||| Sbjct 27427 AGTCTTGCAATA 27438 Score = 149 bits (164), Expect = 4e-32 Identities = 107/122 (88%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 352 AATATCTTGAATCCGTGAACTAACAAGACTATAATGATGAAAATAGTTGCCGAAATGAGG 411 |||||||||| ||||| |||||||||| ||||||| | |||||||||||| |||||||| Sbjct 28071 AATATCTTGATTCCGTTAACTAACAAGGCTATAATACTAAAAATAGTTGCCAAAATGAGG 28012 Query 412 TGaaaaaaaTTTTTCGATCGTAAAGCACTCTCTGATGTTTCTCATCATG-AGTCATGCAA 470 |||||||||||||||| ||||||||| ||||||| | ||| ||||||| |||| ||||| Sbjct 28011 CGAAAAAAATTTTTCGAACGTAAAGCAGTCTCTGACGATTCGCATCATGAAGTCTTGCAA 27952 Query 471 TA 472 || Sbjct 27951 TA 27950 >seq33 Length=1277348 Score = 291 bits (322), Expect = 5e-75 Identities = 218/252 (87%), Gaps = 3/252 (1%) Strand=Plus/Plus Query 222 GTTCCATAAATGACGGACAGGAAAAttttttgacctattttgatgttttttttCGTTTCT 281 ||| |||| |||||||||||||| ||||||||||||||||||| |||||| ||||||| Sbjct 60281 GTTTCATACATGACGGACAGGAAT-TTTTTTGACCTATTTTGATATTTTTTC-CGTTTCT 60338 Query 282 AGTGCACTAAATCAATTTTTGAAAAGTGTCAAATTAATCTCTATTAAATTATCTTGACAA 341 | |||||||||| ||||||| |||| | |||||||||| |||||||||||| ||||| Sbjct 60339 ATTGCACTAAATTAATTTTTAGCAAGTATAGAATTAATCTCCATTAAATTATCTCGACAA 60398 Query 342 TAGTATGCAAAATATCTTGAATCCGTGAACTAACAAGACTATAATGATGAAAATAGTTGC 401 |||||||||||||||||| ||||| |||||||||| ||||||| | ||||||||||| Sbjct 60399 TAGTATGCAAAATATCTTTTTTCCGTTAACTAACAAGGCTATAATACTAAAAATAGTTGC 60458 Query 402 CGAAATGAGGTGaaaaaaaTTTTTCGATCGTAAAGCACTCTCTGATGTTTCTCATCATG- 460 | |||||||| |||||||||||||||| ||||||||| ||||||| | ||| ||||||| Sbjct 60459 CAAAATGAGGCGAAAAAAATTTTTCGAACGTAAAGCAGTCTCTGACGATTCGCATCATGA 60518 Query 461 AGTCATGCAATA 472 |||| ||||||| Sbjct 60519 AGTCTTGCAATA 60530 >seq234 Length=648534 Score = 279 bits (308), Expect = 3e-71 Identities = 217/258 (84%), Gaps = 7/258 (3%) Strand=Plus/Plus Query 222 GTTCCATAAATGACGGACAGGAAAAttttttgacctattttgatgttttttttCGTTTCT 281 ||| |||| |||||| ||| ||| ||||||||||||||||||| ||||||| | ||||| Sbjct 11882 GTTTCATACATGACGAACACAAAATTTTTTTGACCTATTTTGATATTTTTTTCCTTTTCT 11941 Query 282 AGTGCACTAAATCAATTTTTGAAAAGTGTCAAATTAATCTCTATTAAATTATCTTGACAA 341 | ||| |||||| ||||||| |||| | |||||||||| |||||||||||| ||||| Sbjct 11942 ATTGCCCTAAATTAATTTTTAGCAAGTATAGAATTAATCTCCATTAAATTATCTCGACAA 12001 Query 342 TAGTATGCAAAATATCTTGAATCCGTGAACTAACAAGACT------ATAATGATGAAAAT 395 |||||||||||||||||||| ||| | |||||||||| || ||||| | ||||| Sbjct 12002 TAGTATGCAAAATATCTTGATTCCATTAACTAACAAGGCTAAACTAATAATACTAAAAAT 12061 Query 396 AGTTGCCGAAATGAGGTGaaaaaaaTTTTTCGATCGTAAAGCACTCTCTGATGTTTCTCA 455 ||||||| |||||||| | ||||| |||||||||||||||||||||||||| | ||| || Sbjct 12062 AGTTGCCAAAATGAGGCG-AAAAACTTTTTCGATCGTAAAGCACTCTCTGAAGCTTCGCA 12120 Query 456 TCATGAGTCATGCAATAA 473 ||||||||| |||||||| Sbjct 12121 TCATGAGTCGTGCAATAA 12138 >seq121 Length=521636 Score = 279 bits (308), Expect = 3e-71 Identities = 213/251 (85%), Gaps = 1/251 (0%) Strand=Plus/Minus Query 222 GTTCCATAAATGACGGACAGGAAAAttttttgacctattttgatgttttttttCGTTTCT 281 ||| |||| |||||||||||| ||||| ||||||||||||| ||||||| ||||||| Sbjct 266532 GTTTCATACATGACGGACAGGTTTGTTTTT-GACCTATTTTGATATTTTTTTCCGTTTCT 266474 Query 282 AGTGCACTAAATCAATTTTTGAAAAGTGTCAAATTAATCTCTATTAAATTATCTTGACAA 341 | |||||||||| |||||| |||| | ||||||||| |||||||||||| ||||| Sbjct 266473 ATTGCACTAAATTTATTTTTAGCAAGTATAGAATTAATCTTCATTAAATTATCTCGACAA 266414 Query 342 TAGTATGCAAAATATCTTGAATCCGTGAACTAACAAGACTATAATGATGAAAATAGTTGC 401 ||| ||||||||||||||| ||||| |||||||||| ||||||| | ||||||||||| Sbjct 266413 CAGTTTGCAAAATATCTTGATTCCGTTAACTAACAAGGCTATAATACTAAAAATAGTTGC 266354 Query 402 CGAAATGAGGTGaaaaaaaTTTTTCGATCGTAAAGCACTCTCTGATGTTTCTCATCATGA 461 | ||| |||| |||||||||| ||||||||||||| | ||| ||||| ||| |||||||| Sbjct 266353 CAAAAGGAGGCGAAAAAAATTATTCGATCGTAAAGAATTCTGTGATGCTTCGCATCATGA 266294 Query 462 GTCATGCAATA 472 ||||||||||| Sbjct 266293 GTCATGCAATA 266283 >seq140 Length=726855 Score = 264 bits (292), Expect = 6e-67 Identities = 195/226 (86%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 222 GTTCCATAAATGACGGACAGGAAAAttttttgacctattttgatgttttttttCGTTTCT 281 ||| |||| ||||||||||||||| ||||||||||||||||||| ||||||| ||||||| Sbjct 304606 GTTTCATACATGACGGACAGGAAA-TTTTTTGACCTATTTTGATATTTTTTTCCGTTTCT 304548 Query 282 AGTGCACTAAATCAATTTTTGAAAAGTGTCAAATTAATCTCTATTAAATTATCTTGACAA 341 | |||||||||| ||||||| |||| | |||||||||| |||| |||||| || || Sbjct 304547 ATTGCACTAAATTAATTTTTAGCAAGTATAGAATTAATCTCCATTATTTTATCTCGATAA 304488 Query 342 TAGTATGCAAAATATCTTGAATCCGTGAACTAACAAGACTATAATGATGAAAATAGTTGC 401 ||| |||||||||||||||| ||| | |||||||||| |||| ||| | ||||||||||| Sbjct 304487 TAGGATGCAAAATATCTTGATTCCATTAACTAACAAGGCTATGATGCTAAAAATAGTTGC 304428 Query 402 CGAAATGAGGTGaaaaaaaTTTTTCGATCGTAAAGCACTCTCTGAT 447 | |||||||| || | ||||||||||||||||||||||||||||| Sbjct 304427 CAAAATGAGGCTAATAGAATTTTTCGATCGTAAAGCACTCTCTGAT 304382 >seq442 Length=82742 Score = 260 bits (288), Expect = 8e-66 Identities = 206/246 (84%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 227 ATAAATGACGGACAGGAAAAttttttgacctattttgatgttttttttCGTTTCTAGTGC 286 ||| ||| ||||||| ||| ||||||||||| ||||||| ||||||| ||||||| ||| Sbjct 72591 ATACATGTCGGACAGTAAATTTTTTTGACCTGTTTTGATATTTTTTTCCGTTTCTTTTGC 72650 Query 287 ACTAAATCAATTTTTGAAAAGTGTCAAATTAATCTCTATTAAATTATCTTGACAATAGTA 346 | ||||| ||||||| ||| | |||||||||| | |||||||||| |||||||||| Sbjct 72651 AATAAATTAATTTTTAGCTAGTATAGAATTAATCTCCAATAAATTATCTCGACAATAGTA 72710 Query 347 TGCAAAATATCTTGAATCCGTGAACTAACAAGACTATAATGATGAAAATAGTTGCCGAAA 406 ||||| ||||||||| | || |||||||||| ||||||| | |||||||||||| ||| Sbjct 72711 TGCAAGATATCTTGATTATGTTAACTAACAAGGCTATAATACTAAAAATAGTTGCCAAAA 72770 Query 407 TGAGGTGaaaaaaaTTTTTCGATCGTAAAGCACTCTCTGATGTTTCTCATCATGAGTCAT 466 || || |||||||| |||||| ||||||||||||||||||| |||| | |||||||| | Sbjct 72771 TGGGGAGAAAAAAAAGTTTCGAACGTAAAGCACTCTCTGATGCTTCT-AGCATGAGTCGT 72829 Query 467 GCAATA 472 |||||| Sbjct 72830 GCAATA 72835 >seq135 Length=452117 Score = 260 bits (288), Expect = 8e-66 Identities = 207/246 (84%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 227 ATAAATGACGGACAGGAAAAttttttgacctattttgatgttttttttCGTTTCTAGTGC 286 ||| ||||||||||||| |||||| | | ||||||| |||||| ||||| || ||| Sbjct 256130 ATACATGACGGACAGGATTTTTTTTTTAATT-TTTTGATATTTTTTC-CGTTTTTATTGC 256073 Query 287 ACTAAATCAATTTTTGAAAAGTGTCAAATTAATCTCTATTAAATTATCTTGACAATAGTA 346 | |||| ||||||| |||| | |||||||||| |||||||||||| |||||||||| Sbjct 256072 GCGAAATTAATTTTTAGCAAGTATAGAATTAATCTCCATTAAATTATCTCGACAATAGTA 256013 Query 347 TGCAAAATATCTTGAATCCGTGAACTAACAAGACTATAATGATGAAAATAGTTGCCGAAA 406 | ||||||||||||| ||||| |||||||||||||||||| | |||||||||||| ||| Sbjct 256012 TACAAAATATCTTGATTCCGTTAACTAACAAGACTATAATACTAAAAATAGTTGCCAAAA 255953 Query 407 TGAGGTGaaaaaaaTTTTTCGATCGTAAAGCACTCTCTGATGTTTCTCATCATGAGTCAT 466 ||||| |||||||| | |||| |||||||||||||||||||| ||| ||||| ||||| | Sbjct 255952 TGAGGCGAAAAAAAATGTTCGGTCGTAAAGCACTCTCTGATGCTTCGCATCAAGAGTCGT 255893 Query 467 GCAATA 472 |||||| Sbjct 255892 GCAATA 255887 >seq1258 Length=3912 Score = 259 bits (286), Expect = 3e-65 Identities = 211/252 (84%), Gaps = 3/252 (1%) Strand=Plus/Plus Query 222 GTTCCATAAATGACGGACAGGAAAAttttttgacctattttgatgttttttttCGTTTCT 281 ||| |||| |||||||||| | ||||| ||||||||||||| ||||||| ||||||| Sbjct 2704 GTTTCATACATGACGGACACGTTTGTTTTT-GACCTATTTTGATATTTTTTTCCGTTTCT 2762 Query 282 AGTGCACTAAATCAATTTTTGAAAAGTGTCAAATTAATCTCTATTAAATTATCTTGACAA 341 | |||||||||| ||| ||| ||| | |||||||||| || || |||||| || || Sbjct 2763 ATTGCACTAAATTAATATTTAGCAAGAATAGAATTAATCTCCAT-AAGTTATCTCGATAA 2821 Query 342 TAGTATGCAAAATATCTTGAATCCGTGAACTAACAAGACTATAATGATGAAAATAGTTGC 401 ||||||||||||||||||| ||||| |||||||||| ||||||| | ||||||||||| Sbjct 2822 AAGTATGCAAAATATCTTGATTCCGTTAACTAACAAGGCTATAATACTAAAAATAGTTGC 2881 Query 402 CGAAATGAGGTGaaaaaaaTTTTTCGATCGTAAAGCACTCTCTGATGTTTCTCATCATG- 460 | |||||||| |||||||||||||||| ||||||||| ||||||| | ||| ||||||| Sbjct 2882 CAAAATGAGGCGAAAAAAATTTTTCGAACGTAAAGCAGTCTCTGACGATTCGCATCATGA 2941 Query 461 AGTCATGCAATA 472 |||| ||||||| Sbjct 2942 AGTCTTGCAATA 2953 >seq223 Length=794585 Score = 257 bits (284), Expect = 9e-65 Identities = 210/252 (83%), Gaps = 6/252 (2%) Strand=Plus/Plus Query 222 GTTCCATAAATGACGGACAGGAAAAttttttgacctattttgatgttttttttCGTTTCT 281 ||| ||| ||||||||||||| ||||||||||||| ||||| | ||||| | |||| Sbjct 767245 GTTTCATTCATGACGGACAGGACT-TTTTTTGACCTATCTTGATATGTTTTTCCTTTTCC 767303 Query 282 AGTGCACTAAATCAATTTTTGAA-AAGTGTCAAATTAATCTCTATTAAATTATCTTGACA 340 | |||||||||| ||||||| | |||| | |||||||||| |||||||||||| |||| Sbjct 767304 ATTGCACTAAATTAATTTTTAAGCAAGTATAGAATTAATCTCCATTAAATTATCTCGACA 767363 Query 341 ATAGTATGCAAAATATCTTGAATCCGTGAACTAACAAGACTATAATGATGAAAATAGTTG 400 ||||||||||||||||||||| ||||| |||||||||| ||||||| | |||||||||| Sbjct 767364 ATAGTATGCAAAATATCTTGATTCCGTTAACTAACAAGCCTATAATACTAAAAATAGTTG 767423 Query 401 CCGAAATGAGGTGaaaaaaaTTTTTCGATCGTAAAGCACTCTCTGATGTTTCTCATCATG 460 | |||||| | ||||||| |||||||||||||||||||||||||||| || ||| Sbjct 767424 CTAAAATGATGCGAAAAAATTTTTTCGATCGTAAAGCACTCTCTGATGCTTTGCAT---- 767479 Query 461 AGTCATGCAATA 472 ||| ||||||| Sbjct 767480 AGTTGTGCAATA 767491 >seq51 Length=834498 Score = 239 bits (264), Expect = 3e-59 Identities = 196/236 (83%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 222 GTTCCATAAATGACGGACAGGAAAAtttttt-gacctattttgatgttttttttCGTTTC 280 ||| |||| |||| |||||||| |||||| ||||||||||||| |||||| | |||| Sbjct 413141 GTTGCATACATGATGGACAGGAGTTTTTTTTTGACCTATTTTGATATTTTTTC-CATTTC 413199 Query 281 TAGTGCACTAAATCAATTTTTGAAAAGTGTCAAATTAATCTCTATTAAATTATCTTGACA 340 || |||| ||||| ||||||| ||| | |||||||||| |||||||| ||| ||| Sbjct 413200 TATTGCAGTAAATTAATTTTTAGCAAGAATAGAATTAATCTCCATTAAATTTTCTCTACA 413259 Query 341 ATAGTATGCAAAATATCTTGAATCCGTGAACTAACAAGACTATAATGATGAAAATAGTTG 400 ||||||||||||||||||||| ||||| |||||||||| ||||||| || |||||||||| Sbjct 413260 ATAGTATGCAAAATATCTTGATTCCGTTAACTAACAAGGCTATAATAATAAAAATAGTTG 413319 Query 401 CCGAAATGAGGTGaaaaaaaTTTTTCGATCGTAAAGCACTCTCTGATGTTTCTCAT 456 || |||||||| || |||| ||||| |||||||||| ||||||||| |||| || Sbjct 413320 CCAAAATGAGGCAAATAAAAATTTTCAATCGTAAAGCTTTCTCTGATGCTTCTGAT 413375 >seq64 Length=1946208 Score = 226 bits (250), Expect = 2e-55 Identities = 201/254 (79%), Gaps = 17/254 (7%) Strand=Plus/Plus Query 222 GTTCCATAAATGACGGACAGGAAAAttttttgacctattttgatgt---tttttttCGTT 278 ||| ||| |||| ||||| ||| ||||| ||||||||||||| | ||||||| || Sbjct 946482 GTTTCATTCATGAAGGACAAGAATTTTTTTGGACCTATTTTGATATATTTTTTTTTAATT 946541 Query 279 TCTAGTGCACTAAATCAATTTTTGAAAAGTGTCAAATTAATCTCTATTAAATTATCTTGA 338 |||| |||||||||| ||||||| |||| | || ||||||| || Sbjct 946542 TCTATTGCACTAAATTAATTTTTAGCAAGTATAGAA--------------ATTATCTCGA 946587 Query 339 CAATAGTATGCAAAATATCTTGAATCCGTGAACTAACAAGACTATAATGATGAAAATAGT 398 |||||||||||||||||||| || ||||| |||||||||| ||||||| | || ||||| Sbjct 946588 CAATAGTATGCAAAATATCTAGATTCCGTTAACTAACAAGGCTATAATACTAAATATAGT 946647 Query 399 TGCCGAAATGAGGTGaaaaaaaTTTTTCGATCGTAAAGCACTCTCTGATGTTTCTCATCA 458 |||| |||||||| |||| |||||||||||||||||||||||||||||| ||| || || Sbjct 946648 TGCCTAAATGAGGCGAAACTAATTTTTCGATCGTAAAGCACTCTCTGATGCTTCGCAGCA 946707 Query 459 TGAGTCATGCAATA 472 |||||| ||||||| Sbjct 946708 TGAGTCGTGCAATA 946721 >seq1 Length=6243310 Score = 210 bits (232), Expect = 1e-50 Identities = 174/210 (83%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 222 GTTCCATAAATGACGGACAGGAAAAttttttgacctattttgatgttttttttCGTTTCT 281 ||| |||| ||||||||||||||| ||||||||||||||||||| ||| ||| ||||||| Sbjct 2148567 GTTTCATACATGACGGACAGGAAATTTTTTTGACCTATTTTGATATTTGTTTCCGTTTCT 2148508 Query 282 AGTGCACTAAATCAATTTTTGAAAAGTGTCAAATTAATCTCTATTAAATTATCTTGACAA 341 | |||||||||| ||||||| |||| | |||||||||| ||||||| |||| ||||| Sbjct 2148507 ATTGCACTAAATTAATTTTTAGCAAGTATATAATTAATCTCCATTAAATCATCTCGACAA 2148448 Query 342 TAGTATGCAAAATATCTTGAATCCGTGAACTAACAAGACTATA--ATGATGAAAATAGTT 399 |||||||| ||| ||||||| ||||| | ||||| || ||||| || | ||| ||||| Sbjct 2148447 TAGTATGC-AAAGATCTTGATTCCGTTAGCTAACCAGGCTATACTATAACAAAAGTAGTT 2148389 Query 400 GCCGAAATGAGGTGaaaaaaaTTTTTCGAT 429 ||| |||||||| ||||| |||||| || Sbjct 2148388 GCCAAAATGAGGCCCAAAAATTTTTTCAAT 2148359 >seq367 Length=136493 Score = 197 bits (218), Expect = 8e-47 Identities = 147/176 (84%), Gaps = 21/176 (12%) Strand=Plus/Plus Query 8348 GATGTGGaaaaaaaaaTTAGAAAAATGATTCACT-------------CTGCAACTTCCCG 8394 ||| || ||||||||||||||||| | ||||| ||||||||||||| Sbjct 24522 GATCTGACAAAAAAAATTAGAAAAACGGTTCACCTTAAAGGCCATCCCTGCAACTTCCCG 24581 Query 8395 CTAATTCCATTCCTGGGCGCTTAAAATTGTACTTATGACATTTTTGAGTTTTTAAGCTCA 8454 |||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 24582 CTAATTCCATTCCTGGGCGCTTAAAATTGTACTTATGACATTTTTG--------AGCTCA 24633 Query 8455 AAATATAATTTATGTGTTATTTTGAGCTCGCTGAGTTCTAAGAAATAATATTTCTA 8510 |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 24634 AAATATAATTTATGTGATATTTTGAGCTCGCTGAGTTCAAAGAAATAATATTTCTA 24689 >seq127 Length=591228 Score = 196 bits (216), Expect = 3e-46 Identities = 131/146 (90%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 327 AAATTATCTTGACAATAGTATGCAAAATATCTTGAATCCGTGAACTAACAAGACTATAAT 386 ||||||||| ||||||||||||||||||||||||| ||||| |||||||||| ||||||| Sbjct 210482 AAATTATCTCGACAATAGTATGCAAAATATCTTGATTCCGTTAACTAACAAGGCTATAAT 210541 Query 387 GATGAAAATAGTTGCCGAAATGAGGTGaaaaaaaTTTTTCGATCGTAAAGCACTCTCTGA 446 | |||||||||||| |||||||| ||||||||||| |||||||||||||||| ||||| Sbjct 210542 ACTAAAAATAGTTGCCAAAATGAGGCGAAAAAAATTTATCGATCGTAAAGCACTGTCTGA 210601 Query 447 TGTTTCTCATCATGAGTCATGCAATA 472 | ||| ||||||||||| ||||||| Sbjct 210602 CGCTTCGCATCATGAGTCGTGCAATA 210627 >seq320 Length=175372 Score = 179 bits (198), Expect = 2e-41 Identities = 139/169 (82%), Gaps = 21/169 (12%) Strand=Plus/Minus Query 8355 aaaaaaaaaTTAGAAAAATGATTCACT-------------CTGCAACTTCCCGCTAATTC 8401 |||||||||||||||||| | ||||| |||||||||||||||||||| Sbjct 22087 AAAAAAAAATTAGAAAAACGGTTCACCTTAAAGGCCATCCCTGCAACTTCCCGCTAATTC 22028 Query 8402 CATTCCTGGGCGCTTAAAATTGTACTTATGACATTTTTGAGTTTTTAAGCTCAAAATATA 8461 ||||||||||||||| ||||||||||||||||||||||| || |||||| ||| Sbjct 22027 CATTCCTGGGCGCTTTAAATTGTACTTATGACATTTTTG--------AGATCAAAACATA 21976 Query 8462 ATTTATGTGTTATTTTGAGCTCGCTGAGTTCTAAGAAATAATATTTCTA 8510 ||||||||| ||||||||||||||||||||| ||| ||||||||||||| Sbjct 21975 ATTTATGTGATATTTTGAGCTCGCTGAGTTCAAAGTAATAATATTTCTA 21927 >seq3 Length=1815429 Score = 109 bits (120), Expect = 3e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 398 TTGCCGAAATGAGGTGaaaaaaaTTTTTCGATCGTAAAGCACTCTCTGATGTTTCTCATC 457 ||||| |||| ||| |||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 458206 TTGCCAAAATAAGGCGAAAAAAATTTTTCGATCGTAAAGCACTCTCTGATGCTTCGCATC 458147 Query 458 ATGAGTCATGCAATA 472 ||||||| ||||||| Sbjct 458146 ATGAGTCGTGCAATA 458132 >seq56 Length=833486 Score = 100 bits (110), Expect = 2e-17 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 222 GTTCCATAAATGACGGACAGGAAAAttttttgacctattttgatgttttttttCGTTTCT 281 ||| |||| ||||||||||||||| |||||||||||| ||| || ||||||| ||||||| Sbjct 590436 GTTGCATACATGACGGACAGGAAATTTTTTTGACCTAATTTCATATTTTTTTCCGTTTCT 590495 Query 282 AGTGCACTAAATCAATTTTT 301 | || ||||||| ||||||| Sbjct 590496 ATTGAACTAAATTAATTTTT 590515 Score = 100 bits (110), Expect = 2e-17 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 222 GTTCCATAAATGACGGACAGGAAAAttttttgacctattttgatgttttttttCGTTTCT 281 ||| |||| ||||||||||||||| |||||||||||| ||| || ||||||| ||||||| Sbjct 590788 GTTGCATACATGACGGACAGGAAATTTTTTTGACCTAATTTCATATTTTTTTCCGTTTCT 590729 Query 282 AGTGCACTAAATCAATTTTT 301 | || ||||||| ||||||| Sbjct 590728 ATTGAACTAAATTAATTTTT 590709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27995100769220