Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_006648.1 Length=15158 Score E Sequences producing significant alignments: (Bits) Value seq247 288 1e-73 seq179 280 1e-71 seq709 275 6e-70 seq545 275 6e-70 seq33 275 6e-70 seq13 266 3e-67 seq121 262 4e-66 seq442 260 1e-65 seq223 257 2e-64 seq140 251 7e-63 seq135 250 2e-62 seq234 235 5e-58 seq1258 224 1e-54 seq51 217 1e-52 seq1 217 1e-52 seq64 214 2e-51 seq127 161 1e-35 seq3 82.4 7e-12 >seq247 Length=263828 Score = 288 bits (318), Expect = 1e-73 Identities = 298/386 (77%), Gaps = 17/386 (4%) Strand=Plus/Plus Query 6814 ATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCGCCCCATATTTC 6873 ||||| ||||||||||||||| |||||||||||| || ||||||||||| ||| || Sbjct 109259 ATGATGCAAAGCATCAGAGAGTGCTTTACGATCGAA-AATTTTTTTTCGCCTCATTTT-- 109315 Query 6874 GGCAACTATTTTTATTATTATACCCTTGTTAGTTAACGAAATCAAGATATTAAGCATACT 6933 |||||||||||||| | ||||| ||||||| ||||| | |||||||||||| ||||||| Sbjct 109316 GGCAACTATTTTTAGTGTTATAGCCTTGTTTGTTAATGGAATCAAGATATTTTGCATACT 109375 Query 6934 ATTGTCTCGATTATTTAATGGAGATTAATTGGATACttttaaaaaatttatttagtgcaa 6993 |||||| || |||||||||||||||||| || ||| ||||||| ||||||||||| Sbjct 109376 ATTGTCGAAATAATTTAATGGAGATTAATTCTATTCTTGCTAAAAATTAATTTAGTGCAA 109435 Query 6994 tagaaacggaaaaaaacatcaaaatagtttaaaaaattttCCCGTCCGTCAAACGGATAT 7053 |||||||||||||||| |||||||||| | |||||| |||| |||||||| ||| Sbjct 109436 TAGAAACGGAAAAAAATATCAAAATAGGTCAAAAAAAATTCCTGTCCGTCA----TGTAT 109491 Query 7054 GAACCT-TGTAAACACTGTAGCTTGCCAAAAAATCCATTAATTCAGTGAAATGTTNNNNN 7112 ||| || | |||||||||| ||| | ||||| ||||| || ||| | | || Sbjct 109492 GAAACTCCGGAAACACTGTAACTTATGAGAAAATACATTATTTGAGTTATTTTTT----- 109546 Query 7113 NNNNAATTCTTTGAAGGA--ATTGCAGGCCCCCTACCGCGGATGGCTATGTAACTCAGTG 7170 ||||||| | || |||| || | | | ||| ||||||| ||| ||||| Sbjct 109547 TTTTAATTCTT--ATCGACTATTGTAGATCATCGAATGCGAATGGCTAATTAATTCAGTA 109604 Query 7171 TCGTTTAATTGCAATtaataaaataa 7196 |||||||||| |||| |||||| ||| Sbjct 109605 TCGTTTAATTACAATCAATAAATTAA 109630 >seq179 Length=350167 Score = 280 bits (310), Expect = 1e-71 Identities = 303/397 (76%), Gaps = 17/397 (4%) Strand=Plus/Plus Query 6803 TTGGACGACCGATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCG 6862 ||| ||||| ||||| ||||||||||||| || |||||||||||| || ||||||||| Sbjct 232513 TTGCACGACTCATGATGCGAAGCATCAGAGAATGCTTTACGATCGAAAAATTTTTTTTCG 232572 Query 6863 CCCCATATTTCGGCAACTATTTTTATTATTATACCCTTGTTAGTTAACGAAATCAAGATA 6922 || ||| || |||||||||||| | ||||||| ||||||||||||||| |||||||||| Sbjct 232573 CCTCATTTT--GGCAACTATTTT-AGTATTATAGCCTTGTTAGTTAACGGAATCAAGATA 232629 Query 6923 TTAAGCATACTATTGTCTCGATTATTTAATGGAGATTAATTGGATACttttaaaaaattt 6982 || ||||||||||||| ||| ||| |||||||||||||| |||||| ||||||| Sbjct 232630 TTTTGCATACTATTGTCGAGATAATTAAATGGAGATTAATTCTATACTTGCTAAAAATTA 232689 Query 6983 atttagtgcaatagaaacggaaaaaaacatcaaaatagtttaaaaaattttCCCGTCCGT 7042 ||||||||||||||||| ||||||||| | ||||||| | |||||| ||| |||||| Sbjct 232690 ATTTAGTGCAATAGAAAAGGAAAAAAATGTTAAAATAGGTCAAAAAAAAATCCTGTCCGT 232749 Query 7043 CAAACGGATATGAACCT-TGTAAACACTGTAGCTTGCCAAAAAATCCATTAATTCAGTGA 7101 || |||||| || | |||||||||| ||| | | |||||| |||| || ||| | Sbjct 232750 CA----TGTATGAAACTCCGGAAACACTGTAACTTTCAATAAAATCAATTATTTGAGTTA 232805 Query 7102 AATGTTNNNNNNNNNAATTCT--TTGAAGGAATTGCAGGCCCCCTACCGCGGATGGCTAT 7159 | || ||||| | || | ||| || | | | ||| |||||| Sbjct 232806 TTTTTTTTTTT-----ATTCTAGTCGA--CAGTTGTAGATCATCGAGTGCGAATGGCTCA 232858 Query 7160 GTAACTCAGTGTCGTTTAATTGCAATtaataaaataa 7196 ||| ||||| |||||||||| |||| |||||| ||| Sbjct 232859 TTAATTCAGTTTCGTTTAATTACAATCAATAAATTAA 232895 >seq709 Length=10720 Score = 275 bits (304), Expect = 6e-70 Identities = 297/386 (77%), Gaps = 22/386 (6%) Strand=Plus/Plus Query 6814 ATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCGCCCCATATTTC 6873 ||||| ||| | ||||||| || |||||| ||||| |||||||||||||| ||| || Sbjct 4059 ATGATGCGAATCGTCAGAGACTGCTTTACGTTCGAA-AAATTTTTTTCGCCTCATTTT-- 4115 Query 6874 GGCAACTATTTTTATTATTATACCCTTGTTAGTTAACGAAATCAAGATATTAAGCATACT 6933 |||||||||||||| ||||||| ||||||||||||||| || |||||||| ||||||| Sbjct 4116 GGCAACTATTTTTAGTATTATAGCCTTGTTAGTTAACGGAAAAAAGATATTTTGCATACT 4175 Query 6934 ATTGTCTCGATTATTTAATGGAGATTAATTGGATACttttaaaaaatttatttagtgcaa 6993 |||||| ||| |||||||||||||||||| |||||| ||||||| ||||||||||| Sbjct 4176 ATTGTCGAGATAATTTAATGGAGATTAATTCTATACTTGCTAAAAATTAATTTAGTGCAA 4235 Query 6994 tagaaacggaaaaaaacatcaaaatagtttaaaaaattttCCCGTCCGTCAAACGGATAT 7053 ||||||||| |||||| |||||||||| | |||||| |||| |||||||| ||| Sbjct 4236 TAGAAACGG-AAAAAATATCAAAATAGGTCAAAAAA-ATTCCTGTCCGTCA----TGTAT 4289 Query 7054 GAACCT-TGTAAACACTGTAGCTTGCCAAAAAATCCATTAATTCAGTGAAATGTTNNNNN 7112 ||| || | |||||||||| ||| | | |||||| |||| || ||| | | || Sbjct 4290 GAAACTCCGGAAACACTGTAACTTTCAATAAAATCAATTATTTGAGTTATTTTTT----- 4344 Query 7113 NNNNAATTCT--TTGAAGGAATTGCAGGCCCCCTACCGCGGATGGCTATGTAACTCAGTG 7170 | |||| | || | ||| || | | | ||| |||||| ||| |||||| Sbjct 4345 ---TATTTCTAGTCGA--CAGTTGTAGATCATCGAGTGCGAATGGCTCATTAATTCAGTG 4399 Query 7171 TCGTTTAATTGCAATtaataaaataa 7196 |||||||||| |||| |||||| ||| Sbjct 4400 TCGTTTAATTACAATCAATAAATTAA 4425 Score = 235 bits (260), Expect = 5e-58 Identities = 290/389 (75%), Gaps = 22/389 (6%) Strand=Plus/Minus Query 6814 ATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCGCCCCATATTTC 6873 ||||| ||| | ||||||| || |||||| ||||| |||||||||||||| ||| || Sbjct 3519 ATGATGCGAATCGTCAGAGACTGCTTTACGTTCGAA-AAATTTTTTTCGCCTCATTTT-- 3463 Query 6874 GGCAACTATTTTTATTATTATACCCTTGTTAGTTAACGAAATCAAGATATTAAGCATACT 6933 |||||||||||||| ||||||| ||||||||||||||| |||||||||||| ||||||| Sbjct 3462 GGCAACTATTTTTAGTATTATAGCCTTGTTAGTTAACGGAATCAAGATATTTTGCATACT 3403 Query 6934 ATTGTCTCGATTATTTAATGGAGATTAATTGGATACttttaaaaaatttatttagtgcaa 6993 || || ||| | || ||||||||||||| || ||| ||| ||| ||||||||||| Sbjct 3402 TTTATCGAGATAACTT-ATGGAGATTAATTCTATTCTTGCTAAATATTAATTTAGTGCAA 3344 Query 6994 tagaaacggaaaaaaacatcaaaatagtttaaaaaattttCCCGTCCGTCAAACGGATAT 7053 |||||||||||||||| |||||||||| | ||||| | |||||||| ||| Sbjct 3343 TAGAAACGGAAAAAAATATCAAAATAG-GTCAAAAACAAACGTGTCCGTCA----TGTAT 3289 Query 7054 GAACCT-TGTAAACACTGTAGCTTGCCAAAAAATCCAT---TAATTCAGTGAAATGTTNN 7109 ||| || | |||||||||| ||| | |||||| || || || ||| || | || Sbjct 3288 GAAACTCCGGAAACACTGTAACTTATGAGAAAATCAATTTGTATTTGAGTTAATTATTTT 3229 Query 7110 NNNNNNNAATTCT--TTGAAGGAATTGCAGGCCCCCTACCGCGGATGGCTATGTAACTCA 7167 ||||| | || |||||||| | | | ||| |||||| ||| ||| Sbjct 3228 TTT-----ATTCTAATCGA--CAATTGCAGATCATCGAATGCGAATGGCTCATTAATTCA 3176 Query 7168 GTGTCGTTTAATTGCAATtaataaaataa 7196 | ||| ||||||| |||| |||||| ||| Sbjct 3175 GCGTCCTTTAATTACAATCAATAAATTAA 3147 >seq545 Length=33278 Score = 275 bits (304), Expect = 6e-70 Identities = 297/386 (77%), Gaps = 22/386 (6%) Strand=Plus/Minus Query 6814 ATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCGCCCCATATTTC 6873 ||||| ||| | ||||||| || |||||| ||||| |||||||||||||| ||| || Sbjct 27424 ATGATGCGAATCGTCAGAGACTGCTTTACGTTCGAA-AAATTTTTTTCGCCTCATTTT-- 27368 Query 6874 GGCAACTATTTTTATTATTATACCCTTGTTAGTTAACGAAATCAAGATATTAAGCATACT 6933 |||||||||||||| ||||||| ||||||||||||||| || |||||||| ||||||| Sbjct 27367 GGCAACTATTTTTAGTATTATAGCCTTGTTAGTTAACGGAAAAAAGATATTTTGCATACT 27308 Query 6934 ATTGTCTCGATTATTTAATGGAGATTAATTGGATACttttaaaaaatttatttagtgcaa 6993 |||||| ||| |||||||||||||||||| |||||| ||||||| ||||||||||| Sbjct 27307 ATTGTCGAGATAATTTAATGGAGATTAATTCTATACTTGCTAAAAATTAATTTAGTGCAA 27248 Query 6994 tagaaacggaaaaaaacatcaaaatagtttaaaaaattttCCCGTCCGTCAAACGGATAT 7053 ||||||||| |||||| |||||||||| | |||||| |||| |||||||| ||| Sbjct 27247 TAGAAACGG-AAAAAATATCAAAATAGGTCAAAAAA-ATTCCTGTCCGTCA----TGTAT 27194 Query 7054 GAACCT-TGTAAACACTGTAGCTTGCCAAAAAATCCATTAATTCAGTGAAATGTTNNNNN 7112 ||| || | |||||||||| ||| | | |||||| |||| || ||| | | || Sbjct 27193 GAAACTCCGGAAACACTGTAACTTTCAATAAAATCAATTATTTGAGTTATTTTTT----- 27139 Query 7113 NNNNAATTCT--TTGAAGGAATTGCAGGCCCCCTACCGCGGATGGCTATGTAACTCAGTG 7170 | |||| | || | ||| || | | | ||| |||||| ||| |||||| Sbjct 27138 ---TATTTCTAGTCGA--CAGTTGTAGATCATCGAGTGCGAATGGCTCATTAATTCAGTG 27084 Query 7171 TCGTTTAATTGCAATtaataaaataa 7196 |||||||||| |||| |||||| ||| Sbjct 27083 TCGTTTAATTACAATCAATAAATTAA 27058 Score = 131 bits (144), Expect = 2e-26 Identities = 98/113 (87%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 6814 ATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCGCCCCATATTTC 6873 ||||| ||| | ||||||| || |||||| ||||| |||||||||||||| ||| || Sbjct 27964 ATGATGCGAATCGTCAGAGACTGCTTTACGTTCGAA-AAATTTTTTTCGCCTCATTTT-- 28020 Query 6874 GGCAACTATTTTTATTATTATACCCTTGTTAGTTAACGAAATCAAGATATTAA 6926 |||||||||||||| ||||||| ||||||||||||||| |||||||||||||| Sbjct 28021 GGCAACTATTTTTAGTATTATAGCCTTGTTAGTTAACGGAATCAAGATATTAA 28073 >seq33 Length=1277348 Score = 275 bits (304), Expect = 6e-70 Identities = 297/386 (77%), Gaps = 22/386 (6%) Strand=Plus/Minus Query 6814 ATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCGCCCCATATTTC 6873 ||||| ||| | ||||||| || |||||| ||||| |||||||||||||| ||| || Sbjct 60516 ATGATGCGAATCGTCAGAGACTGCTTTACGTTCGAA-AAATTTTTTTCGCCTCATTTT-- 60460 Query 6874 GGCAACTATTTTTATTATTATACCCTTGTTAGTTAACGAAATCAAGATATTAAGCATACT 6933 |||||||||||||| ||||||| ||||||||||||||| || |||||||| ||||||| Sbjct 60459 GGCAACTATTTTTAGTATTATAGCCTTGTTAGTTAACGGAAAAAAGATATTTTGCATACT 60400 Query 6934 ATTGTCTCGATTATTTAATGGAGATTAATTGGATACttttaaaaaatttatttagtgcaa 6993 |||||| ||| |||||||||||||||||| |||||| ||||||| ||||||||||| Sbjct 60399 ATTGTCGAGATAATTTAATGGAGATTAATTCTATACTTGCTAAAAATTAATTTAGTGCAA 60340 Query 6994 tagaaacggaaaaaaacatcaaaatagtttaaaaaattttCCCGTCCGTCAAACGGATAT 7053 ||||||||| |||||| |||||||||| | |||||| |||| |||||||| ||| Sbjct 60339 TAGAAACGG-AAAAAATATCAAAATAGGTCAAAAAA-ATTCCTGTCCGTCA----TGTAT 60286 Query 7054 GAACCT-TGTAAACACTGTAGCTTGCCAAAAAATCCATTAATTCAGTGAAATGTTNNNNN 7112 ||| || | |||||||||| ||| | | |||||| |||| || ||| | | || Sbjct 60285 GAAACTCCGGAAACACTGTAACTTTCAATAAAATCAATTATTTGAGTTATTTTTT----- 60231 Query 7113 NNNNAATTCT--TTGAAGGAATTGCAGGCCCCCTACCGCGGATGGCTATGTAACTCAGTG 7170 | |||| | || | ||| || | | | ||| |||||| ||| |||||| Sbjct 60230 ---TATTTCTAGTCGA--CAGTTGTAGATCATCGAGTGCGAATGGCTCATTAATTCAGTG 60176 Query 7171 TCGTTTAATTGCAATtaataaaataa 7196 |||||||||| |||| |||||| ||| Sbjct 60175 TCGTTTAATTACAATCAATAAATTAA 60150 >seq13 Length=1808754 Score = 266 bits (294), Expect = 3e-67 Identities = 302/400 (76%), Gaps = 18/400 (5%) Strand=Plus/Minus Query 6803 TTGGACGACCGATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCG 6862 ||| | ||| ||||| ||| |||||||||||| |||||| ||||| |||||||||||| Sbjct 473796 TTGCAAGACTCATGATGCGAATCATCAGAGAGTGCTTTACGTTCGAAAAAATTTTTTTCG 473737 Query 6863 CCCCATATTTCGGCAACTATTTTTATTATTATACCCTTGTTAGTTAACGAAATCAAGATA 6922 || ||| || |||||||||||||| ||||||| ||||||||||||||| |||||||||| Sbjct 473736 CCTCATTTT--GGCAACTATTTTTAGTATTATAGCCTTGTTAGTTAACGGAATCAAGATA 473679 Query 6923 TTAAGCATACTATTGTCTCGATTATTTAATGGAGATTAATTGGATACttttaaaaaattt 6982 || ||||||||||||| ||| | ||| |||||||||||| |||||| ||| ||| Sbjct 473678 TTTTGCATACTATTGTCGAGATAACTTA-TGGAGATTAATTATATACTTGCTAAATATTA 473620 Query 6983 atttagtgcaatagaaacggaaaaaaacatcaaaatagtttaaaaaattttCCCGTCCGT 7042 ||||||||||||||||||||||||||| |||||||||| | ||| || ||||| |||| | Sbjct 473619 ATTTAGTGCAATAGAAACGGAAAAAAATATCAAAATAGGTCAAATAAATTTCCTGTCCAT 473560 Query 7043 CAAACGGATATGA-ACCTTGTAAACACTGTAGCTTGCCAAAAAATCCAT---TAATTCAG 7098 || ||||| || | |||||||||| ||| | |||||| || || || || Sbjct 473559 CA----TGTATGACACTCCGGAAACACTGTAACTTATGAGAAAATCAATTTGTATTTGAG 473504 Query 7099 TGAAATGTTNNNNNNNNNAATTCT--TTGAAGGAATTGCAGGCCCCCTACCGCGGATGGC 7156 | || | || ||||| | || |||||||| | | | ||| ||||| Sbjct 473503 TTAATTTTTTTTTTTT---ATTCTAATCGA--CAATTGCAGATCATCGAATGCGAATGGC 473449 Query 7157 TATGTAACTCAGTGTCGTTTAATTGCAATtaataaaataa 7196 | ||| |||||||| || | || ||| ||||| | ||| Sbjct 473448 AAATTAATTCAGTGTCATTGATTTACAACTAATACATTAA 473409 Score = 244 bits (270), Expect = 1e-60 Identities = 298/400 (75%), Gaps = 19/400 (5%) Strand=Plus/Minus Query 6803 TTGGACGACCGATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCG 6862 ||| | ||| ||||| ||||||||| ||| | |||||||||||| || ||||||||| Sbjct 480670 TTGCATGACTCATGATGCGAAGCATCACAGAATTCTTTACGATCGAATAA-TTTTTTTCG 480612 Query 6863 CCCCATATTTCGGCAACTATTTTTATTATTATACCCTTGTTAGTTAACGAAATCAAGATA 6922 || | | || |||||||||||||| ||||||| ||||||||||||||| |||||||||| Sbjct 480611 CCTCCTTTT--GGCAACTATTTTTAGTATTATAGCCTTGTTAGTTAACGGAATCAAGATA 480554 Query 6923 TTAAGCATACTATTGTCTCGATTATTTAATGGAGATTAATTGGATACttttaaaaaattt 6982 || ||||||||||||| ||| | ||| |||||||||||| |||||| ||| ||| Sbjct 480553 TTTTGCATACTATTGTCGAGATAACTTA-TGGAGATTAATTATATACTTGCTAAATATTA 480495 Query 6983 atttagtgcaatagaaacggaaaaaaacatcaaaatagtttaaaaaattttCCCGTCCGT 7042 ||||||||||||||||||||||||||| |||||||||| | |||||| ||| |||| | Sbjct 480494 ATTTAGTGCAATAGAAACGGAAAAAAATATCAAAATAGGTCAAAAAAAAATCCTGTCCAT 480435 Query 7043 CAAACGGATATGA-ACCTTGTAAACACTGTAGCTTGCCAAAAAATCCAT---TAATTCAG 7098 || ||||| || | |||||||||| ||| | |||||| || || || || Sbjct 480434 CA----TGTATGACACTCCGGAAACACTGTAACTTATGAGAAAATCAATTTGTATTTGAG 480379 Query 7099 TGAAATGTTNNNNNNNNNAATTCT--TTGAAGGAATTGCAGGCCCCCTACCGCGGATGGC 7156 | || | || ||||| | || |||||||| | | | ||| ||||| Sbjct 480378 TTAATTTTTTTTTTTT---ATTCTAATCGA--CAATTGCAGATCATCGAATGCGAATGGC 480324 Query 7157 TATGTAACTCAGTGTCGTTTAATTGCAATtaataaaataa 7196 | ||| |||||||| || | || ||| ||||| | ||| Sbjct 480323 AAATTAATTCAGTGTCATTGATTTACAACTAATACATTAA 480284 >seq121 Length=521636 Score = 262 bits (290), Expect = 4e-66 Identities = 298/396 (75%), Gaps = 15/396 (4%) Strand=Plus/Plus Query 6803 TTGGACGACCGATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCG 6862 ||| | ||| ||||| ||||||||| ||| | |||||||||||| || ||||||||| Sbjct 266285 TTGCATGACTCATGATGCGAAGCATCACAGAATTCTTTACGATCGAATAA-TTTTTTTCG 266343 Query 6863 CCCCATATTTCGGCAACTATTTTTATTATTATACCCTTGTTAGTTAACGAAATCAAGATA 6922 || | | || |||||||||||||| ||||||| ||||||||||||||| |||||||||| Sbjct 266344 CCTCCTTTT--GGCAACTATTTTTAGTATTATAGCCTTGTTAGTTAACGGAATCAAGATA 266401 Query 6923 TTAAGCATACTATTGTCTCGATTATTTAATGGAGATTAATTGGATACttttaaaaaattt 6982 || ||| ||| ||||| ||| |||||||| ||||||||| |||||| |||||| Sbjct 266402 TTTTGCAAACTGTTGTCGAGATAATTTAATGAAGATTAATTCTATACTTGCTAAAAATAA 266461 Query 6983 atttagtgcaatagaaacggaaaaaaacatcaaaatagtttaaaaaattttCCCGTCCGT 7042 ||||||||||||||||||||||||||| |||||||||| | ||||| || |||||| Sbjct 266462 ATTTAGTGCAATAGAAACGGAAAAAAATATCAAAATAG-GTCAAAAACAAACCTGTCCGT 266520 Query 7043 CAAACGGATATGAACCT-TGTAAACACTGTAGCTTGCCAAAAAATCCATTAATTCAGTGA 7101 || |||||| || | |||||||||| ||| | |||||| |||| || Sbjct 266521 CA----TGTATGAAACTCCGGAAACACTGTAACTTATGAGAAAATCAATTATTT-----G 266571 Query 7102 AATGTTNNNNNNNNNAATTCTTTGAAGGAATTGCAGGCCCCCTACCGCGGATGGCTATGT 7161 ||| || |||||| | ||||| || | | | ||| |||||| | Sbjct 266572 AATTTTTTTTTTTTTAATTCTAATAGACAATTGTAGATCATCGAATGCGAATGGCTTATT 266631 Query 7162 AACTCAGTGTCGTTTAATTGCAATtaataaaataaa 7197 || |||||||||||||||| |||||||| ||||||| Sbjct 266632 AATTCAGTGTCGTTTAATTACAATTAAT-AAATAAA 266666 >seq442 Length=82742 Score = 260 bits (288), Expect = 1e-65 Identities = 300/396 (76%), Gaps = 16/396 (4%) Strand=Plus/Minus Query 6803 TTGGACGACCGATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCG 6862 ||| ||||| ||| || |||||||||||||||| |||||| ||||| | |||||||| Sbjct 72833 TTGCACGACTCATGCTA-GAAGCATCAGAGAGTGCTTTACGTTCGAA-ACTTTTTTTTCT 72776 Query 6863 CCCCATATTTCGGCAACTATTTTTATTATTATACCCTTGTTAGTTAACGAAATCAAGATA 6922 |||||| || |||||||||||||| ||||||| |||||||||||||| |||||||||| Sbjct 72775 CCCCATTTT--GGCAACTATTTTTAGTATTATAGCCTTGTTAGTTAACATAATCAAGATA 72718 Query 6923 TTAAGCATACTATTGTCTCGATTATTTAATGGAGATTAATTGGATACttttaaaaaattt 6982 | ||||||||||||| ||| ||||| |||||||||||| ||||| ||||||| Sbjct 72717 TCTTGCATACTATTGTCGAGATAATTTATTGGAGATTAATTCTATACTAGCTAAAAATTA 72658 Query 6983 atttagtgcaatagaaacggaaaaaaacatcaaaatagtttaaaaaattttCCCGTCCGT 7042 ||||| ||||| ||||||||||||||| ||||||| || | |||||| ||| | ||||| Sbjct 72657 ATTTATTGCAAAAGAAACGGAAAAAAATATCAAAACAGGTCAAAAAAATTTACTGTCCG- 72599 Query 7043 CAAACGGATATGAACCTTGTAAACACTGTAGCTTGCCAAAAAATCCATTAATTCAGTGAA 7102 | | | ||| ||| | |||||||||| ||| | |||||| |||| || ||| | Sbjct 72598 -ACATGTATA-AAACTCCGGAAACACTGTAACTTATGAGAAAATCGATTATTTGAGT-TA 72542 Query 7103 ATGTTNNNNNNNNNAATTCT--TTGAAGGAATTGCAGGCCCCCTACCGCGGATGGCTATG 7160 || || ||||| | || |||||||| | | | ||| |||||| Sbjct 72541 ATATTCTTTTT----ATTCTAATCGA--CAATTGCAGATCATCGAATGCGAATGGCTCAT 72488 Query 7161 TAACTCAGTGTCGTTTAATTGCAATtaataaaataa 7196 ||| |||| ||| ||||||| |||| |||||| ||| Sbjct 72487 TAATTCAGCGTCCTTTAATTACAATCAATAAATTAA 72452 >seq223 Length=794585 Score = 257 bits (284), Expect = 2e-64 Identities = 288/377 (76%), Gaps = 14/377 (4%) Strand=Plus/Minus Query 6822 AAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCGCCCCATATTTCGGCAACTA 6881 ||||||||||||||| |||||||||||| ||||||||| ||| ||| || ||||||| Sbjct 767474 AAGCATCAGAGAGTGCTTTACGATCGAAAAAATTTTTT-CGCATCATTTTA--GCAACTA 767418 Query 6882 TTTTTATTATTATACCCTTGTTAGTTAACGAAATCAAGATATTAAGCATACTATTGTCTC 6941 |||||| ||||||| |||||||||||||| |||||||||||| ||||||||||||| Sbjct 767417 TTTTTAGTATTATAGGCTTGTTAGTTAACGGAATCAAGATATTTTGCATACTATTGTCGA 767358 Query 6942 GATTATTTAATGGAGATTAATTGGATACtt-ttaaaaaatttatttagtgcaatagaaac 7000 ||| |||||||||||||||||| |||||| | ||||||| |||||||||||| |||| Sbjct 767357 GATAATTTAATGGAGATTAATTCTATACTTGCTTAAAAATTAATTTAGTGCAATGGAAAA 767298 Query 7001 ggaaaaaaacatcaaaatagtttaaaaaattttCCCGTCCGTCAAACGGATATG-AACCT 7059 ||||||| | ||||| |||| | |||||| ||| |||||||| || ||| ||| | Sbjct 767297 GGAAAAACATATCAAGATAGGTCAAAAAA-AGTCCTGTCCGTCA---TGA-ATGAAACTT 767243 Query 7060 TGTAAACACTGTAGCTTGCCAAAAAATCCATTAATTCAGTGAAATGTTNNNNNNNNNAAT 7119 || |||||||||| ||| | ||||| |||| || ||| ||| || ||| Sbjct 767242 TGAAAACACTGTAACTTATGAGAAAATTAATTATTTGAGT--AATTTT--TTTTTTTAAT 767187 Query 7120 TCTTTGAAGGAATTGCAGGCCCCCTACCGCGGATGGCTATGTAACTCAGTGTCGTTTAAT 7179 |||| ||||| | | | | ||| |||||| | | |||||||| |||| | Sbjct 767186 TCTTATCGACAATTGTTGATCATCGAATGCGAATGGCTCATTTATTCAGTGTCTTTTAGT 767127 Query 7180 TGCAATtaataaaataa 7196 | ||||||||||| ||| Sbjct 767126 TACAATTAATAAATTAA 767110 >seq140 Length=726855 Score = 251 bits (278), Expect = 7e-63 Identities = 286/378 (76%), Gaps = 17/378 (4%) Strand=Plus/Plus Query 6826 ATCAGAGAGTGGTTTACGATCGAACAAAtttttttCGCCCCATATTTCGGCAACTATTTT 6885 ||||||||||| |||||||||||| ||||| | || ||| ||| || |||||||||||| Sbjct 304382 ATCAGAGAGTGCTTTACGATCGAA-AAATTCTATTAGCCTCATTTT--GGCAACTATTTT 304438 Query 6886 TATTATTATACCCTTGTTAGTTAACGAAATCAAGATATTAAGCATACTATTGTCTCGATT 6945 || || ||| ||||||||||||| | |||||||||||| |||| ||||| || ||| Sbjct 304439 TAGCATCATAGCCTTGTTAGTTAATGGAATCAAGATATTTTGCATCCTATTATCGAGATA 304498 Query 6946 ATTTAATGGAGATTAATTGGATACttttaaaaaatttatttagtgcaatagaaacggaaa 7005 | ||||||||||||||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 304499 AAATAATGGAGATTAATTCTATACTTGCTAAAAATTAATTTAGTGCAATAGAAACGGAAA 304558 Query 7006 aaaacatcaaaatagtttaaaaaattttCCCGTCCGTCAAACGGATATGAACCT-TGTAA 7064 |||| |||||||||| | |||||| ||||| |||||||| |||||| || | || Sbjct 304559 AAAATATCAAAATAGGTCAAAAAA-TTTCCTGTCCGTCA----TGTATGAAACTCCGGAA 304613 Query 7065 ACACTGTAGCTTGCCAAAAAATCCATTAATTCAGTGAAATGTTNNNNNNNNNAATTCT-- 7122 |||||||| || | |||| | |||| || ||| || | || |||||| Sbjct 304614 ACACTGTAAGTTATGAGAAAAACAATTATTTGAGTTAATTTTT----TTGTTAATTCTAA 304669 Query 7123 TTGAAGGAATTGCAGGCCCCCTACCGCGGATGGCTATGTAACTCAGTGTCGTTTAATTGC 7182 | || || || | | | | || |||||| ||| |||||||||||||||| | Sbjct 304670 TCGA--CAACTGTAAATCATCGAATGCTAATGGCTGATTAATTCAGTGTCGTTTAATTAC 304727 Query 7183 AATtaataaaataaaaaa 7200 |||||||||| ||| ||| Sbjct 304728 AATTAATAAATTAATAAA 304745 >seq135 Length=452117 Score = 250 bits (276), Expect = 2e-62 Identities = 299/397 (75%), Gaps = 19/397 (5%) Strand=Plus/Plus Query 6803 TTGGACGACCGATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCG 6862 ||| ||||| |||| |||||||||||||||| ||||||| |||||| ||||||||| Sbjct 255889 TTGCACGACTCTTGATGCGAAGCATCAGAGAGTGCTTTACGACCGAACAT-TTTTTTTCG 255947 Query 6863 CCCCATATTTCGGCAACTATTTTTATTATTATACCCTTGTTAGTTAACGAAATCAAGATA 6922 || ||| || |||||||||||||| ||||||| |||||||||||||| |||||||||| Sbjct 255948 CCTCATTTT--GGCAACTATTTTTAGTATTATAGTCTTGTTAGTTAACGGAATCAAGATA 256005 Query 6923 TTAAGCATACTATTGTCTCGATTATTTAATGGAGATTAATTGGATACttttaaaaaattt 6982 || | ||||||||||| ||| |||||||||||||||||| |||||| ||||||| Sbjct 256006 TTTTGTATACTATTGTCGAGATAATTTAATGGAGATTAATTCTATACTTGCTAAAAATTA 256065 Query 6983 atttagtgcaatagaaacggaaaaaaacatcaaaatagtttaaaaaattttCCCGTCCGT 7042 |||| | |||||| |||||| |||||| ||||||| | || |||||| ||| |||||| Sbjct 256066 ATTTCGCGCAATAAAAACGG-AAAAAATATCAAAA-AATTAAAAAAAAAATCCTGTCCGT 256123 Query 7043 CAAACGGATATGAACCTTGTAAACACTGTAGCTTGCCAAAAAATCCATTAATTCAGTGAA 7102 | | | ||| ||| | ||||||| || ||| | |||||| |||| || ||| | Sbjct 256124 C--ATGTATA-AAACTCCGGAAACACTTTAACTTATGAGAAAATCAATTATTTGAGTTAT 256180 Query 7103 ATGTTNNNNNNNNNAATTCT--TTGAAGGAATTGCAGGCCCCCTACCGCGGATGGCTATG 7160 | || ||||| | || ||||| || | | | ||| ||| ||| Sbjct 256181 TTTTTTTTT------ATTCTAATCGA--CAATTGTAGATCATCGAATGCGAATGACTAAT 256232 Query 7161 TAACTCAGTGTCGTTTAATTGCAATtaataaaataaa 7197 | | ||||||||||||||| |||||||| ||||||| Sbjct 256233 TTATTCAGTGTCGTTTAATAACAATTAAT-AAATAAA 256268 >seq234 Length=648534 Score = 235 bits (260), Expect = 5e-58 Identities = 202/248 (81%), Gaps = 10/248 (4%) Strand=Plus/Minus Query 6803 TTGGACGACCGATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCG 6862 ||| ||||| ||||| ||||| |||||||||| |||||||||||| || ||||| || Sbjct 12135 TTGCACGACTCATGATGCGAAGCTTCAGAGAGTGCTTTACGATCGAAAAAGTTTTT--CG 12078 Query 6863 CCCCATATTTCGGCAACTATTTTTATTATTAT------ACCCTTGTTAGTTAACGAAATC 6916 || ||| || |||||||||||||| |||||| | ||||||||||||| | |||| Sbjct 12077 CCTCATTTT--GGCAACTATTTTTAGTATTATTAGTTTAGCCTTGTTAGTTAATGGAATC 12020 Query 6917 AAGATATTAAGCATACTATTGTCTCGATTATTTAATGGAGATTAATTGGATACttttaaa 6976 |||||||| ||||||||||||| ||| |||||||||||||||||| |||||| || Sbjct 12019 AAGATATTTTGCATACTATTGTCGAGATAATTTAATGGAGATTAATTCTATACTTGCTAA 11960 Query 6977 aaatttatttagtgcaatagaaacggaaaaaaacatcaaaatagtttaaaaaattttCCC 7036 ||||| |||||| |||||||||| ||||||||| |||||||||| | |||||| ||| Sbjct 11959 AAATTAATTTAGGGCAATAGAAAAGGAAAAAAATATCAAAATAGGTCAAAAAAATTTTGT 11900 Query 7037 GTCCGTCA 7044 || ||||| Sbjct 11899 GTTCGTCA 11892 >seq1258 Length=3912 Score = 224 bits (248), Expect = 1e-54 Identities = 221/279 (79%), Gaps = 10/279 (4%) Strand=Plus/Minus Query 6814 ATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCGCCCCATATTTC 6873 ||||| ||| | ||||||| || |||||| ||||| |||||||||||||| ||| || Sbjct 2939 ATGATGCGAATCGTCAGAGACTGCTTTACGTTCGAA-AAATTTTTTTCGCCTCATTTT-- 2883 Query 6874 GGCAACTATTTTTATTATTATACCCTTGTTAGTTAACGAAATCAAGATATTAAGCATACT 6933 |||||||||||||| ||||||| ||||||||||||||| |||||||||||| ||||||| Sbjct 2882 GGCAACTATTTTTAGTATTATAGCCTTGTTAGTTAACGGAATCAAGATATTTTGCATACT 2823 Query 6934 ATTGTCTCGATTATTTAATGGAGATTAATTGGATACttttaaaaaatttatttagtgcaa 6993 || || ||| | || ||||||||||||| || ||| ||| ||| ||||||||||| Sbjct 2822 TTTATCGAGATAACTT-ATGGAGATTAATTCTATTCTTGCTAAATATTAATTTAGTGCAA 2764 Query 6994 tagaaacggaaaaaaacatcaaaatagtttaaaaaattttCCCGTCCGTCAAACGGATAT 7053 |||||||||||||||| |||||||||| | ||||| | |||||||| ||| Sbjct 2763 TAGAAACGGAAAAAAATATCAAAATAG-GTCAAAAACAAACGTGTCCGTCA----TGTAT 2709 Query 7054 GAACCT-TGTAAACACTGTAGCTTGCCAAAAAATCCATT 7091 ||| || | |||||||||| ||| | |||||| ||| Sbjct 2708 GAAACTCCGGAAACACTGTAACTTATGAGAAAATCAATT 2670 >seq51 Length=834498 Score = 217 bits (240), Expect = 1e-52 Identities = 178/213 (84%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 6817 ATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCGCCCCATATTTCGGC 6876 || |||||||||||||| | |||||||| ||| || |||| || ||| ||| || ||| Sbjct 413375 ATCAGAAGCATCAGAGAAAGCTTTACGATTGAA-AATTTTTATTTGCCTCATTTT--GGC 413319 Query 6877 AACTATTTTTATTATTATACCCTTGTTAGTTAACGAAATCAAGATATTAAGCATACTATT 6936 ||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||| Sbjct 413318 AACTATTTTTATTATTATAGCCTTGTTAGTTAACGGAATCAAGATATTTTGCATACTATT 413259 Query 6937 GTCTCGATTATTTAATGGAGATTAATTGGATACttttaaaaaatttatttagtgcaatag 6996 || || |||||||||||||||||| || ||| ||||||| ||||| |||||||| Sbjct 413258 GTAGAGAAAATTTAATGGAGATTAATTCTATTCTTGCTAAAAATTAATTTACTGCAATAG 413199 Query 6997 aaacggaaaaaaacatcaaaatagtttaaaaaa 7029 ||| || |||||| |||||||||| | |||||| Sbjct 413198 AAATGG-AAAAAATATCAAAATAGGTCAAAAAA 413167 >seq1 Length=6243310 Score = 217 bits (240), Expect = 1e-52 Identities = 260/349 (74%), Gaps = 14/349 (4%) Strand=Plus/Plus Query 6851 AAAtttttttCGCCCCATATTTCGGCAACTATTTTTATTAT--TATACCCTTGTTAGTTA 6908 ||| ||||| ||| ||| || |||||||| |||| |||| |||| ||| ||||| || Sbjct 2148365 AAAATTTTTGGGCCTCATTTT--GGCAACTACTTTTGTTATAGTATAGCCTGGTTAGCTA 2148422 Query 6909 ACGAAATCAAGATATTAAGCATACTATTGTCTCGATTATTTAATGGAGATTAATTGGATA 6968 ||| ||||||||| || ||||||||||||| ||| |||||||||||||||||| ||| Sbjct 2148423 ACGGAATCAAGATCTTT-GCATACTATTGTCGAGATGATTTAATGGAGATTAATTATATA 2148481 Query 6969 Cttttaaaaaatttatttagtgcaatagaaacggaaaaaaacatcaaaatagtttaaaaa 7028 ||| ||||||| ||||||||||||||||||||||| ||| |||||||||| | ||||| Sbjct 2148482 CTTGCTAAAAATTAATTTAGTGCAATAGAAACGGAAACAAATATCAAAATAGGTCAAAAA 2148541 Query 7029 attttCCCGTCCGTCAAACGGATATGAACCT-TGTAAACACTGTAGCTTGCCAAAAAATC 7087 | ||||| |||||||| |||||| || | ||||||| || | | | ||| || Sbjct 2148542 AATTTCCTGTCCGTCA----TGTATGAAACTCCGGAAACACTTTAACGTATGAGAAAGTC 2148597 Query 7088 CATTAATTCAGTGAAATGTTNNNNNNNNNAATTCTTTGAAGGAATTGCAGGCCCCCTACC 7147 |||| || ||| | || || |||| || ||||| || | | Sbjct 2148598 AATTATTTGAGTTATATATTTTTTTTATT--TTCTCCGA--CAATTGTAGATCATAGAAT 2148653 Query 7148 GCGGATGGCTATGTAACTCAGTGTCGTTTAATTGCAATtaataaaataa 7196 ||| ||||||| ||| ||||||||||||| || ||||||||||| ||| Sbjct 2148654 GCGAATGGCTAATTAATTCAGTGTCGTTTAGTTACAATTAATAAATTAA 2148702 >seq64 Length=1946208 Score = 214 bits (236), Expect = 2e-51 Identities = 289/399 (72%), Gaps = 34/399 (9%) Strand=Plus/Minus Query 6803 TTGGACGACCGATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCG 6862 ||| ||||| ||| | |||||||||||||||| |||||||||||| ||||| ||||| Sbjct 946719 TTGCACGACTCATGCTGCGAAGCATCAGAGAGTGCTTTACGATCGAA-AAATTAGTTTCG 946661 Query 6863 CCCCATATTTCGGCAACTATTTTTATTATTATACCCTTGTTAGTTAACGAAATCAAGATA 6922 || ||| || ||||||||| |||| ||||||| ||||||||||||||| |||| ||||| Sbjct 946660 CCTCAT--TTAGGCAACTATATTTAGTATTATAGCCTTGTTAGTTAACGGAATCTAGATA 946603 Query 6923 TTAAGCATACTATTGTCTCGATTATTTAATGGAGATTAATTGGATACttttaaaaaattt 6982 || ||||||||||||| ||||| | || |||||| ||||||| Sbjct 946602 TTTTGCATACTATTGTC--------------GAGATAATTTCTATACTTGCTAAAAATTA 946557 Query 6983 atttagtgcaatagaaacggaaaaaa---acatcaaaatagtttaaaaaattttCCCGTC 7039 ||||||||||||||||| |||||| | |||||||||| | ||||| ||| ||| Sbjct 946556 ATTTAGTGCAATAGAAATTAAAAAAAAATATATCAAAATAGGTCCAAAAAAATTCTTGTC 946497 Query 7040 CGTCAAACGGATATGAACCT-TGTAAACACTGTAGCTTGCCAAAAAATCCATTAATTCAG 7098 | ||| || ||||| || | |||||||||| ||| | |||||| |||| | || Sbjct 946496 CTTCA---TGA-ATGAAACTCCGGAAACACTGTAACTTATGAGAAAATCAATTATTCGAG 946441 Query 7099 TGAAATGTTNNNNNNNNNAATTCT--TTGAAGGAATTGCAGGCCCCCTACCGCGGATGGC 7156 | || | || ||| || | || ||||| || | | | ||| ||||| Sbjct 946440 TTAATTTTT-----TTTTAATCCTAATCGA--CAATTGTAGATCATCGAATGCGAATGGC 946388 Query 7157 TATGTAACTCAGTGTCGTTTAATTGCAATtaataaaata 7195 || ||| |||||||||||||||| |||||||||| || Sbjct 946387 TAACTAATTCAGTGTCGTTTAATTATAATTAATAAATTA 946349 >seq127 Length=591228 Score = 161 bits (178), Expect = 1e-35 Identities = 127/150 (85%), Gaps = 3/150 (2%) Strand=Plus/Minus Query 6800 ATTTTGGACGACCGATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttt 6859 || ||| ||||| ||||| ||||| ||||| |||| ||||||||||| ||||||||| Sbjct 210628 ATATTGCACGACTCATGATGCGAAGCGTCAGACAGTGCTTTACGATCGAT-AAATTTTTT 210570 Query 6860 tCGCCCCATATTTCGGCAACTATTTTTATTATTATACCCTTGTTAGTTAACGAAATCAAG 6919 ||||| ||| || |||||||||||||| ||||||| ||||||||||||||| ||||||| Sbjct 210569 TCGCCTCATTTT--GGCAACTATTTTTAGTATTATAGCCTTGTTAGTTAACGGAATCAAG 210512 Query 6920 ATATTAAGCATACTATTGTCTCGATTATTT 6949 ||||| ||||||||||||| ||| |||| Sbjct 210511 ATATTTTGCATACTATTGTCGAGATAATTT 210482 >seq3 Length=1815429 Score = 82.4 bits (90), Expect = 7e-12 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 6803 TTGGACGACCGATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCG 6862 ||| ||||| ||||| |||||||||||||||| |||||||||||| |||||||||||| Sbjct 458134 TTGCACGACTCATGATGCGAAGCATCAGAGAGTGCTTTACGATCGAA-AAATTTTTTTCG 458192 Query 6863 CCCCATATTTCGGCAA 6878 || ||||| ||||| Sbjct 458193 --CCTTATTTTGGCAA 458206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 48384181621585