Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_006650.1 Length=18768 Score E Sequences producing significant alignments: (Bits) Value seq137 118 1e-22 seq3509 102 1e-17 seq213 86.0 8e-13 seq41 84.2 3e-12 >seq137 Length=487914 Score = 118 bits (130), Expect = 1e-22 Identities = 234/340 (69%), Gaps = 20/340 (6%) Strand=Plus/Minus Query 2478 CTACCCAGTAAATCCCGGAAATAAAACCTTGT-TTGCAATTAATATTAATCAATTTAACA 2536 ||||||| |||||||| || || | ||| | |||||| ||||| | || | ||| | Sbjct 444690 CTACCCAC-AAATCCCGAAAGCAACAACTTTTCTTGCAACTAATACTG-TC--TCTAATA 444635 Query 2537 ATACTTATCCGAAATCGATAGAAAATAACACAAACGCATTGAAGCCAATCATCTATCAAA 2596 | |||||| || | | | || | | || | ||||||||||| || | || |||||| Sbjct 444634 A-ACTTATTTGATAACTAGAGGAGCTGTCAAAGACGCATTGAAGTCAGTTATACATCAAA 444576 Query 2597 GCGGAAACTTTTATCCCTCTAGCAATGACTCAGAAGCTGGAATGAACACCAGAAATAAGA 2656 | |||| | ||||| ||| |||||||| |||| | |||||||| || |||| ||| Sbjct 444575 GTGGAAGCGCTTATCTCTCGAGCAATGAATCAGTTGTCGGAATGAAAAC-AGAA-TAA-- 444520 Query 2657 CAGCGAGCCAAGGACGCTCTGTGGAACAGAATACATCCGACAGTCACGGAAATTCATCAT 2716 | || ||| | | || ||| |||| | | ||| | |||||||| Sbjct 444519 ----------ATTACACTCAGCGTAAAAGACTACAACTAGCGTTCAAGATTGTTCATCAT 444470 Query 2717 CTACCAATTATGATTTAAGCTCACATATAGAAAATAAGACACTATATAATAAGGATAGAG 2776 ||| |||||| | ||||| ||||||| ||||||||| ||| | |||||| | || Sbjct 444469 CTATTAATTATTTATCAAGCTTACATATATAAAATAAGATACTTCCAATTAAGGAGAAAG 444410 Query 2777 AAGCATATACAAGCAAGCACACCGTACCTAACAAACAAAT 2816 || || |||| | |||||||| | || ||||| |||||| Sbjct 444409 AAACACGTACAGGGAAGCACACTGAACATAACAGACAAAT 444370 Score = 95.1 bits (104), Expect = 1e-15 Identities = 237/352 (67%), Gaps = 36/352 (10%) Strand=Plus/Minus Query 15540 CTACCCAGTAAATCCCGGAAATAAAACCTCGT-TTGCAATATTAATATTAATCAATCTAA 15598 ||||||| |||||||| || || | || | |||||| ||||| | || ||||| Sbjct 444690 CTACCCAC-AAATCCCGAAAGCAACAACTTTTCTTGCAAC--TAATACTG-TC--TCTAA 444637 Query 15599 CAATACTTATCCGAAATCGATAGGAAATAACAAAGACGCATTGAAGCCAGTCATCTATCA 15658 || |||||| || | | | |||| | |||||||||||||||| |||| || |||| Sbjct 444636 TAA-ACTTATTTGATAACTAGAGGAGCTGTCAAAGACGCATTGAAGTCAGTTATACATCA 444578 Query 15659 AAGCGGAAACTTTTATCCCTCTAGCAATGACTCAGAAGCTGGAATGAATAC--AAAAAAT 15716 ||| |||| | ||||| ||| |||||||| |||| | |||||||| || || |||| Sbjct 444577 AAGTGGAAGCGCTTATCTCTCGAGCAATGAATCAGTTGTCGGAATGAAAACAGAATAAAT 444518 Query 15717 AACACAAAGAGCCAAGGTGGTTCTGTGGAGCAGAATACATCCGACAGTCAAGGAAATTCA 15776 |||| || | | | ||| |||| | | ||||| |||| Sbjct 444517 TACAC----------------TCAGCGTAAAAGACTACAACTAGCGTTCAAGATTGTTCA 444474 Query 15777 TCATCTACCAATTATGATTCTGACTCAAGCTCACATATAGAAAGTACGACAC--CACATA 15834 ||||||| |||||| || ||||||| ||||||| ||| || || || | || Sbjct 444473 TCATCTATTAATTAT--TT----ATCAAGCTTACATATATAAAATAAGATACTTCCAATT 444420 Query 15835 ATGGGGAAAGAGAAGCCTATGCAAACAAGCACACCGAACCTAACGGACAAAT 15886 | || |||||| | | || || |||||||| |||| |||| ||||||| Sbjct 444419 AAGGAGAAAGAAACACGTA--CAGGGAAGCACACTGAACATAACAGACAAAT 444370 >seq3509 Length=436 Score = 102 bits (112), Expect = 1e-17 Identities = 132/177 (75%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 11452 AATTATAAATAATGGAGCTACAACTCCGGGAATCGAGACTTAttttactaaaattttcta 11511 ||||||||||| ||| |||||| | || || | | | || ||||| |||||||||| Sbjct 164 AATTATAAATATTGGTCCTACAATTTCGAGAGTTAAAAGTTTTTTTA-GGAAATTTTCTA 222 Query 11512 ctcttttaggatcttttttcaaatttcagataacttcaatatttttGAAGTTATAACTAC 11571 | ||||| | ||||||| ||||| || | ||| | ||||||||| || |||| | | Sbjct 223 CCCTTTTTGAATCTTTTGTCAAAATTAAAATATCAAAAATATTTTTCGAGATATACCCAA 282 Query 11572 AAAACGAAGACTCTCtttttttCTCTTCGTTTTTTGTTTATAACAAATAAAATTTTT 11628 ||||| || || | |||||||| | || ||| |||||||||||| | ||||||| Sbjct 283 AAAACTAA-AC-CCCTTTTTTTGT-TTAGTTATTTGTTTATAACTTTTGCAATTTTT 336 Score = 98.7 bits (108), Expect = 1e-16 Identities = 131/177 (74%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 17980 AATTATAAATAATGGAGCTACAACTCCGGGAATCGAGACTTattttactaaaattttcta 18039 ||||||||||| ||| |||||| | || || | | | || ||||| |||||||||| Sbjct 164 AATTATAAATATTGGTCCTACAATTTCGAGAGTTAAAAGTTTTTTTA-GGAAATTTTCTA 222 Query 18040 cttttttaggatcttttttcaaatttcagataacttcaatatttttGAAGTTATAACTAC 18099 | |||| | ||||||| ||||| || | ||| | ||||||||| || |||| | | Sbjct 223 CCCTTTTTGAATCTTTTGTCAAAATTAAAATATCAAAAATATTTTTCGAGATATACCCAA 282 Query 18100 AAAACGAAGACTCTCtttttttCTCTTCGTTTTTTGTTTATAACAAATAAAATTTTT 18156 ||||| || || | |||||||| | || ||| |||||||||||| | ||||||| Sbjct 283 AAAACTAA-AC-CCCTTTTTTTGT-TTAGTTATTTGTTTATAACTTTTGCAATTTTT 336 >seq213 Length=302443 Score = 86.0 bits (94), Expect = 8e-13 Identities = 143/199 (72%), Gaps = 7/199 (4%) Strand=Plus/Plus Query 11435 TTTCAACGTTAAATTACAATTATAAATAATGGAGCTACAACTCCGGGAATCGAGACTTAt 11494 ||||| ||||||||| ||||||||||||||||| || | || || | | || || | Sbjct 248481 TTTCAGAGTTAAATTAAAATTATAAATAATGGAGATAGAGTTCTGGAAGTTCTGAGTT-T 248539 Query 11495 tttactaaaattttctactcttttaggatcttttt-tcaaatttcagataacttcaata- 11552 | || | |||||| || ||||||||| |||||||| | |||||| ||| | |||| Sbjct 248540 TATATTGAAATTTCCTCCTCTTTTAGAATCTTTTTATGCAATTTC--TTAATATTAATAG 248597 Query 11553 tttttGAAGTTATAACTACAAAACGAAGACTCTCtttttttCTCTTCGTTTTTTGTTTAT 11612 ||| |||| ||| | | |||| ||| | | ||| ||| || || || |||||||| Sbjct 248598 TTTATGAA-ATATTAGCAAAAAAAGAA-ATGCCATTTATTTTTCATCTTTAATTGTTTAT 248655 Query 11613 AACAAATAAAATTTTTAAT 11631 ||| | ||||||| || Sbjct 248656 AACTTTTGTAATTTTTTAT 248674 Score = 82.4 bits (90), Expect = 9e-12 Identities = 142/199 (71%), Gaps = 7/199 (4%) Strand=Plus/Plus Query 17963 TTTCAACGTTAAATTACAATTATAAATAATGGAGCTACAACTCCGGGAATCGAGACTTat 18022 ||||| ||||||||| ||||||||||||||||| || | || || | | || || | Sbjct 248481 TTTCAGAGTTAAATTAAAATTATAAATAATGGAGATAGAGTTCTGGAAGTTCTGAGTT-T 248539 Query 18023 tttactaaaattttctacttttttaggatcttttt-tcaaatttcagataacttcaata- 18080 | || | |||||| || || |||||| |||||||| | |||||| ||| | |||| Sbjct 248540 TATATTGAAATTTCCTCCTCTTTTAGAATCTTTTTATGCAATTTC--TTAATATTAATAG 248597 Query 18081 tttttGAAGTTATAACTACAAAACGAAGACTCTCtttttttCTCTTCGTTTTTTGTTTAT 18140 ||| |||| ||| | | |||| ||| | | ||| ||| || || || |||||||| Sbjct 248598 TTTATGAA-ATATTAGCAAAAAAAGAA-ATGCCATTTATTTTTCATCTTTAATTGTTTAT 248655 Query 18141 AACAAATAAAATTTTTAAT 18159 ||| | ||||||| || Sbjct 248656 AACTTTTGTAATTTTTTAT 248674 >seq41 Length=2363699 Score = 84.2 bits (92), Expect = 3e-12 Identities = 143/199 (72%), Gaps = 9/199 (5%) Strand=Plus/Minus Query 11422 CGCGGAGCCCAAGTTTCAACGTTAAATTACAATTATAAATAATGGAGCTACAACTCCGGG 11481 |||| || || ||||||| ||||||||| ||||||||||||||||| || | |||||| Sbjct 634515 CGCGCAGACCTAGTTTCAGAGTTAAATTAAAATTATAAATAATGGAGATAGACTTCCGGG 634456 Query 11482 AATCGAGACTTAttttact-aaaattttctactcttttaggatcttt-tttcaaatttca 11539 | || | | || | || | |||||| || |||||| || || ||| ||| |||||| | Sbjct 634455 AGTCCAAAGTT-TAATATTGGAAATTTCCTCCTCTTTCAGAATTTTTATTTAAAATTTGA 634397 Query 11540 gataacttcaatatttttGAAGTTATAACTACAAAACGAAGACTCTCtttttttCTCTTC 11599 | | ||| || ||| || ||| || |||||||| | | | |||| ||||| Sbjct 634396 TAAATATTC-ATGGTTTATAAAATATTGGTAAAAAACGAA-ATGCCATATTTT--TCTTC 634341 Query 11600 GTTTTTTGTTTATAACAAA 11618 ||||| || || ||||| Sbjct 634340 --TTTTTTTTAATGACAAA 634324 Score = 84.2 bits (92), Expect = 3e-12 Identities = 143/199 (72%), Gaps = 9/199 (5%) Strand=Plus/Minus Query 11422 CGCGGAGCCCAAGTTTCAACGTTAAATTACAATTATAAATAATGGAGCTACAACTCCGGG 11481 |||| || || ||||||| ||||||||| ||||||||||||||||| || | |||||| Sbjct 641822 CGCGCAGACCTAGTTTCAGAGTTAAATTAAAATTATAAATAATGGAGATAGACTTCCGGG 641763 Query 11482 AATCGAGACTTAttttact-aaaattttctactcttttaggatcttt-tttcaaatttca 11539 | || | | || | || | |||||| || |||||| || || ||| ||| |||||| | Sbjct 641762 AGTCCAAAGTT-TAATATTGGAAATTTCCTCCTCTTTCAGAATTTTTATTTAAAATTTGA 641704 Query 11540 gataacttcaatatttttGAAGTTATAACTACAAAACGAAGACTCTCtttttttCTCTTC 11599 | | ||| || ||| || ||| || |||||||| | | | |||| ||||| Sbjct 641703 TAAATATTC-ATGGTTTATAAAATATTGGTAAAAAACGAA-ATGCCATATTTT--TCTTC 641648 Query 11600 GTTTTTTGTTTATAACAAA 11618 ||||| || || ||||| Sbjct 641647 --TTTTTTTTAATGACAAA 641631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 59935461011435