Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_006656.1 Length=12682 Score E Sequences producing significant alignments: (Bits) Value seq216 264 9e-67 >seq216 Length=395888 Score = 264 bits (292), Expect = 9e-67 Identities = 212/255 (83%), Gaps = 12/255 (5%) Strand=Plus/Minus Query 6508 CTGTAAAGTACGCGAACTGAAAAGTTAAGGGACTTAGAAAAAAGTCATCTGCGAAATTGT 6567 ||||| ||||||||||||| ||| ||||||||||||||||||| |||| |||| Sbjct 118576 CTGTAGAGTACGCGAACTGGAAA-TTAAGGGACTTAGAAAAAA-TCATGAGCGA------ 118525 Query 6568 GAGAGAAAGCTGTTGTCTTATCAAAATAGCACGGAATTTATAGAGCTATTTCATTGGTTA 6627 ||||| |||| ||| ||||||||| || ||||||||||||| || |||||||||| Sbjct 118524 ----GAAAGTTGTTATCTCATCAAAATAATACAGAATTTATAGAGCAATCTCATTGGTTA 118469 Query 6628 CAATAGCGATATCTATAAAGCATTAAAGGTGATTAAAATTCAAGTTCTACAGCTTTTGAA 6687 ||||| | ||||| ||||||||| ||||| ||||||| |||||||| |||||||||| Sbjct 118468 CAATATTCACGTCTATTAAGCATTAATGGTGAATAAAATTTAAGTTCTAAAGCTTTTGAA 118409 Query 6688 ATAATGAATAATAATTATGAATTAATCAATTAAATAAACCACAACGAGCCAGCTCATTCC 6747 || ||||| |||||| |||||| ||| ||||||||||| ||||| ||| ||| ||||||| Sbjct 118408 ATTATGAAAAATAATGATGAATGAATTAATTAAATAAATCACAATGAGTCAGATCATTCC 118349 Query 6748 GTTAATGGTGTCCAT 6762 ||||||||||||||| Sbjct 118348 GTTAATGGTGTCCAT 118334 Score = 156 bits (172), Expect = 3e-34 Identities = 139/174 (80%), Gaps = 17/174 (10%) Strand=Plus/Minus Query 6880 TTTTCCTAGAATAAGAGCGATTCCACGAATTGGACAAACAAACTTTGGGTTTACCTACCC 6939 |||||| | || ||||| |||||||||||||| ||||||||||||||||| ||||| || Sbjct 118323 TTTTCC-ATAA-AAGAGTGATTCCACGAATTGAACAAACAAACTTTGGGTGCACCTAACC 118266 Query 6940 TTTTCTGGGAATTGGAATGACGTAGGTGCTTTATCAATAACNNNNNNNNNNNNNNNNATT 6999 ||||||||||||||||| ||||||||||| ||||||| || ||| Sbjct 118265 TTTTCTGGGAATTGGAACGACGTAGGTGC-TTATCAACAA----------ACTCCCCATT 118217 Query 7000 GATAACGCATATAAATATCGTTCCATCCAGCTCACAGTGTTAGTTCCAAAAGAG 7053 |||| |||||||||||| | |||||||||| |||||||||||||||||||| Sbjct 118216 GATAGCGCATATAAATA----TTCATCCAGCTCGCAGTGTTAGTTCCAAAAGAG 118167 Score = 84.2 bits (92), Expect = 2e-12 Identities = 60/68 (88%), Gaps = 1/68 (1%) Strand=Plus/Minus Query 6400 ATTTTGCATTTGAACGAAAATAGTTGGGATAAAATTT-GAAATTTCGACATGGAAACCTT 6458 |||||||||||| | ||||||| ||||||| |||||| |||||||||||||||||| | Sbjct 116316 ATTTTGCATTTGTAAGAAAATAATTGGGATTAAATTTTGAAATTTCGACATGGAAATCCA 116257 Query 6459 TACTAGTA 6466 |||||||| Sbjct 116256 TACTAGTA 116249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40464743893880