Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_006659.1 Length=41573 Score E Sequences producing significant alignments: (Bits) Value seq27 230 6e-56 seq60 228 2e-55 seq320 219 1e-52 seq62 219 1e-52 seq393 212 2e-50 seq2222 210 6e-50 seq391 201 3e-47 seq193 161 3e-35 seq367 140 9e-29 seq161 104 6e-18 >seq27 Length=1459334 Score = 230 bits (254), Expect = 6e-56 Identities = 141/150 (94%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 40988 AAAATTTTGTAAAATTATTCTTAATATACTCTGTACACaatttacttagttaatttaata 41047 || |||||||||||||| |||||||||||||||||||| | ||||||||||||||||||| Sbjct 1050048 AACATTTTGTAAAATTAGTCTTAATATACTCTGTACACTACTTACTTAGTTAATTTAATA 1050107 Query 41048 ttatgtattaatttttataaatgtattatatttttCTGGTGTCTATGCACAGGTGTTTCT 41107 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || | Sbjct 1050108 TTATGTATTAATTTTTAGAAATGTATTATATTTTTCTGGTGTCTATGCACAGGTGCTTAT 1050167 Query 41108 TGCACCTCTATAGAATGTTATACCAGAAGT 41137 ||||||||||||||||| | |||||||||| Sbjct 1050168 TGCACCTCTATAGAATGCTTTACCAGAAGT 1050197 >seq60 Length=741647 Score = 228 bits (252), Expect = 2e-55 Identities = 142/151 (94%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 40988 AAAATTTTGTAAAATTATTCTTAATATACTCTGTACACaatttacttagttaatttaata 41047 ||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||| Sbjct 213292 AAAATTTTGTAAAATTAATCTTAATATACTCTGTACACTACTTACTTAGTTAATTTAATA 213351 Query 41048 ttatgtattaa-tttttataaatgtattatatttttCTGGTGTCTATGCACAGGTGTTTC 41106 ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 213352 TTATGTATTAATTTTTTATAAATGTATTGTATTTTTCTGGTGTCTATGCACAGGTGCTTA 213411 Query 41107 TTGCACCTCTATAGAATGTTATACCAGAAGT 41137 |||||||||||||||||| | |||||||||| Sbjct 213412 TTGCACCTCTATAGAATGCTTTACCAGAAGT 213442 >seq320 Length=175372 Score = 219 bits (242), Expect = 1e-52 Identities = 195/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 40230 TGATTCGTTCGTGAGTTATCGTTGACGAAAGAAAACCGAAAAAAGTGTTTTTTCGGAATT 40289 ||||||||||| ||| |||| | |||||||||||||||||||||| ||||||||| ||| Sbjct 21678 TGATTCGTTCGAGAGATATCATGAACGAAAGAAAACCGAAAAAAGTATTTTTTCGGGATT 21737 Query 40290 ACTCCGAAATTCGTGGTTCAATCAAATTGAACTTAAAGATTTTTTATGAGGCTTAAAAAA 40349 |||| ||||| ||||| ||||| | || | || || |||||||| | | |||| Sbjct 21738 ACTCAAAAATTTTCGGTTCGATCAATTAAAATCTGAAAATCACTTATGAGGATGATAAAA 21797 Query 40350 TTGCGTTGAATGTCACCAACCGCGTAAAAATCGTTCCATTTATTCAAAAGTTATCGCGGT 40409 |||||| ||||| |||||||||| ||||| | | || ||||||||||||| |||| Sbjct 21798 TTGCGTCGAATGGTGCCAACCGCGTGAAAATTGGTTGATCCATTCAAAAGTTATTACGGT 21857 Query 40410 TTGAAAATTTAAAAAATAGTGTTGTATCAAACTTCTATCAGACTTTTGAGCTCGAAGAGC 40469 ||||||||| |||||||||||| || |||||||||||||||||| ||||| ||||| Sbjct 21858 TTGAAAATTCCAAAAATAGTGTTCCATGAAACTTCTATCAGACTTTCGAGCTGAGAGAGC 21917 Query 40470 TAAA 40473 | || Sbjct 21918 TCAA 21921 >seq62 Length=724797 Score = 219 bits (242), Expect = 1e-52 Identities = 140/151 (93%), Gaps = 5/151 (3%) Strand=Plus/Plus Query 40988 AAAATTTTGTAAAATTATTCTTAATATACTCTGTACACaatttacttagttaatttaata 41047 ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 278084 AAAATTTTGTAAAATTAATCTTAATATACTCTGTACAC----TACTTAGTTAATTTAATA 278139 Query 41048 ttatgtattaattttt-ataaatgtattatatttttCTGGTGTCTATGCACAGGTGTTTC 41106 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| || Sbjct 278140 TTATGTATTAATTTTTTATAAATGTATTGTATTTTTCTGGTGTCTATGCACAGGTGCTTA 278199 Query 41107 TTGCACCTCTATAGAATGTTATACCAGAAGT 41137 |||||||||||||||||| | |||||||||| Sbjct 278200 TTGCACCTCTATAGAATGCTTTACCAGAAGT 278230 >seq393 Length=162356 Score = 212 bits (234), Expect = 2e-50 Identities = 137/150 (91%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 40988 AAAATTTTGTAAAATTATTCTTAATATACTCTGTACACaatttacttagttaatttaata 41047 |||||||||||||||| ||||||||| |||| ||||| ||||||||||||||||||| Sbjct 24692 AAAATTTTGTAAAATTGGTCTTAATATGCTCTATACACTGCTTACTTAGTTAATTTAATA 24751 Query 41048 ttatgtattaatttttataaatgtattatatttttCTGGTGTCTATGCACAGGTGTTTCT 41107 ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| || | Sbjct 24752 TTATGTATTGATTTTTATAAATGTATTGTATTTTTCTGGTGTCTATGCACAGGTGCTTAT 24811 Query 41108 TGCACCTCTATAGAATGTTATACCAGAAGT 41137 ||||||||||||||||| | |||||||||| Sbjct 24812 TGCACCTCTATAGAATGCTTTACCAGAAGT 24841 Score = 212 bits (234), Expect = 2e-50 Identities = 137/150 (91%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 40988 AAAATTTTGTAAAATTATTCTTAATATACTCTGTACACaatttacttagttaatttaata 41047 |||||||||||||||| ||||||||| |||| ||||| ||||||||||||||||||| Sbjct 32765 AAAATTTTGTAAAATTGGTCTTAATATGCTCTATACACTGCTTACTTAGTTAATTTAATA 32824 Query 41048 ttatgtattaatttttataaatgtattatatttttCTGGTGTCTATGCACAGGTGTTTCT 41107 ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| || | Sbjct 32825 TTATGTATTGATTTTTATAAATGTATTGTATTTTTCTGGTGTCTATGCACAGGTGCTTAT 32884 Query 41108 TGCACCTCTATAGAATGTTATACCAGAAGT 41137 ||||||||||||||||| | |||||||||| Sbjct 32885 TGCACCTCTATAGAATGCTTTACCAGAAGT 32914 >seq2222 Length=686 Score = 210 bits (232), Expect = 6e-50 Identities = 138/151 (91%), Gaps = 6/151 (4%) Strand=Plus/Minus Query 40988 AAAATTTTGTAAAATTATTCTTAATATACTCTGTACACaatttacttagttaatttaata 41047 ||||||||||||| |||||||||||||||||||| | ||||||||||||||| ||| Sbjct 207 AAAATTTTGTAAA-----TCTTAATATACTCTGTACACTACTTACTTAGTTAATTTGATA 153 Query 41048 ttatgtattaattttt-ataaatgtattatatttttCTGGTGTCTATGCACAGGTGTTTC 41106 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || Sbjct 152 TTATGTATTAATTTTTTATAAATGTATTATATTTTTCTGGTGTCTATGCACAGGTGCTTA 93 Query 41107 TTGCACCTCTATAGAATGTTATACCAGAAGT 41137 |||||||||||||||||| | |||||||||| Sbjct 92 TTGCACCTCTATAGAATGCTTTACCAGAAGT 62 >seq391 Length=224326 Score = 201 bits (222), Expect = 3e-47 Identities = 136/150 (91%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 40988 AAAATTTTGTAAAATTATTCTTAATATACTCTGTACACaatttacttagttaatttaata 41047 || |||||||||||| || ||||||||||||||||||| | |||||||||||||||||| Sbjct 21037 AACATTTTGTAAAATAAT-CTTAATATACTCTGTACACTACTTACTTAGTTAATTTAAT- 20980 Query 41048 ttatgtattaatttttataaatgtattatatttttCTGGTGTCTATGCACAGGTGTTTCT 41107 | || |||||||||||||||||||||| |||||||||||||||||||||||||| || | Sbjct 20979 TAATTAATTAATTTTTATAAATGTATTAAATTTTTCTGGTGTCTATGCACAGGTGCTTAT 20920 Query 41108 TGCACCTCTATAGAATGTTATACCAGAAGT 41137 ||||||||||||||||| | |||||||||| Sbjct 20919 TGCACCTCTATAGAATGCTTTACCAGAAGT 20890 >seq193 Length=399788 Score = 161 bits (178), Expect = 3e-35 Identities = 98/104 (94%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 41034 tagttaatttaatattatgtattaatttttataaatgtattatatttttCTGGTGTCTAT 41093 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 309026 TAGTTAATTTAATATTATGTATTGATTTTTATAAATGTATTGTATTTTTCTGGTGTCTAT 309085 Query 41094 GCACAGGTGTTTCTTGCACCTCTATAGAATGTTATACCAGAAGT 41137 ||||||||| || |||||||||||||||||| | |||||||||| Sbjct 309086 GCACAGGTGCTTATTGCACCTCTATAGAATGCTTTACCAGAAGT 309129 >seq367 Length=136493 Score = 140 bits (154), Expect = 9e-29 Identities = 133/170 (78%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 40304 GGTTCAATCAAATTGAACTTAAAGATTTTTTATGAGGCTTAAAAAATTGCGTTGAATGTC 40363 ||||| ||||| | ||| | || || | |||||| | | |||||||||| ||||| Sbjct 24864 GGTTCGATCAATTAAAACCTGAAAATCACTCATGAGGATGATAAAATTGCGTCGAATGGT 24805 Query 40364 ACCAACCGCGTAAAAATCGTTCCATTTATTCAAAAGTTATCGCGGTTTGAAAATTTAAAA 40423 |||||||||| ||||| | | || ||||||||||||| |||||||||||| ||| Sbjct 24804 GCCAACCGCGTGAAAATTGGTTGATCCATTCAAAAGTTATTATGGTTTGAAAATTCCAAA 24745 Query 40424 AATAGTGTTGTATCAAACTTCTATCAGACTTTTGAGCTCGAAGAGCTAAA 40473 ||||||||| ||| |||||||||||||||||| ||||| |||||| || Sbjct 24744 AATAGTGTTCTATGAAACTTCTATCAGACTTTCGAGCTGAGAGAGCTCAA 24695 >seq161 Length=389988 Score = 104 bits (114), Expect = 6e-18 Identities = 63/67 (94%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 41071 tattatatttttCTGGTGTCTATGCACAGGTGTTTCTTGCACCTCTATAGAATGTTATAC 41130 |||||||||||||||||||||||||||||||| || |||||||||||||||||| | ||| Sbjct 99488 TATTATATTTTTCTGGTGTCTATGCACAGGTGCTTATTGCACCTCTATAGAATGCTTTAC 99547 Query 41131 CAGAAGT 41137 ||||||| Sbjct 99548 CAGAAGT 99554 Score = 104 bits (114), Expect = 6e-18 Identities = 63/67 (94%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 41071 tattatatttttCTGGTGTCTATGCACAGGTGTTTCTTGCACCTCTATAGAATGTTATAC 41130 |||||||||||||||||||||||||||||||| || |||||||||||||||||| | ||| Sbjct 105299 TATTATATTTTTCTGGTGTCTATGCACAGGTGCTTATTGCACCTCTATAGAATGCTTTAC 105358 Query 41131 CAGAAGT 41137 ||||||| Sbjct 105359 CAGAAGT 105365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132903484909650