Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq219 500 1e-136 seq149 125 9e-24 >seq219 Length=603346 Score = 500 bits (554), Expect = 1e-136 Identities = 1027/1507 (68%), Gaps = 30/1507 (2%) Strand=Plus/Plus Query 61962 ACCACCGGTGGTTTTAT-TTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGG 62020 |||| |||| ||||| |||| ||| || | |||||||| || | | || || || Sbjct 377111 ACCATTGGTGATTTTAACTTTAGACTTATCTACGGTGAATTGTATAGCATTGGCAGCTGG 377170 Query 62021 TTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCAT 62080 ||| || |||| ||||||||| || ||||| ||||| | ||||| ||||||| || || Sbjct 377171 TTTTGTTCGTAAATAGTACATGCCAGTTTTCAGACCCATTTTCCATGCGTAAAAGTGTAT 377230 Query 62081 ACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATC 62140 |||| ||| |||| | || ||||| | ||| || || | || |||||||| || Sbjct 377231 GGATGTTAATTTTCCATAATTTGGTTCTGCGACATGTATGTTAAATGACTGACTTTGGTC 377290 Query 62141 GATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAAT 62200 || |||||||| ||||| |||||||||| || | ||||| | ||| ||||| | Sbjct 377291 TATAAAGGCTCCTCTGTCCGCAGCCATTTGAATTGTTGTCTTGACGGAAATCTCCCATAC 377350 Query 62201 AGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG-GTTTGTAT--TCTGAATGGATCCAC 62256 |||||||| | || || | | |||| || | | || || |||||||||| ||| Sbjct 377351 TGTTTTATACAGATCTCTGA-TGTCTTTGGGTATTGCTTCAATGTTCTGAATGGAACCAT 377409 Query 62257 CATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCG-GTTAAAACT 62315 | ||||| |||||| || || |||| ||||| | | || | || ||| || Sbjct 377410 TGTTATGTATAATGAGATTCTTCATTTCTTCATCCCATAGATC-CGCTTGAGTCAAATCT 377468 Query 62316 CTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATA 62375 | | ||||| | || || |||||||| ||||||||||| |||| | |||||| Sbjct 377469 GTTAAAAGATGATGGTTGACCACTTGAAACTCTCCAGACAAAACTCGTCTTTGGTAAATG 377528 Query 62376 TTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTC 62435 || ||| | ||||| | ||| ||||||||||| | |||||||| || || ||||| Sbjct 377529 TTTGATGTAAAAGGTTCAAACGATTCATTATTTCCTAGTATTTGAGCGGTGGAGGCAGTG 377588 Query 62436 GGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTA 62493 ||||| || || | | | ||| | |||||| ||| | || ||||| ||||| | Sbjct 377589 GGCATTGGCGCTAATAGAAGGGAATTACGAAGACC--ATGCTTTGCAATTTTTTCTTTAA 377646 Query 62494 GAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATAC 62553 ||| |||||| ||||||||| | ||| |||||||| | Sbjct 377647 GAGCAGCCCAATCCCAAAGATCTGTGGGTGTTTTGTTCCACATATCGTACTGTAGAATCC 377706 Query 62554 CGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCA 62612 | | || || | || ||| | || || ||| || || |||| |||| ||| Sbjct 377707 CTTGGCTAGCAGGACTTCCCT-CGTAAGTGCTGTAAACACCATCTCTCTCGGCTAACTCA 377765 Query 62613 CAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAG--ATCTT 62670 ||||| ||||| | ||||||||||| || ||||| || || | || ||| || || || Sbjct 377766 CAACTTGCCTCGAGCGCACCGTAATAGATCGTTTCAAATATTTGCTGATTAAGTAATATT 377825 Query 62671 GTGCTTC-CAGGCTATCAAATGGATAATTTAAGA-GAATAAACGCGTCCGCTAATCCTTG 62728 | |||| || || ||| | || |||| | | | ||| ||| || ||||||||||| || Sbjct 377826 GC-CTTCTCA--CTCTCATACGG-TAATCTCATAAGAACAAATGCATCCGCTAATCCCTG 377881 Query 62729 AACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATA 62788 ||| || ||||| || || || ||| || |||| ||| ||| || || || | |||||| Sbjct 377882 AACGCCGATACCAATGGGCCTGTGTTTCATATTCGAGTTTTTCGCCTCCGGTACAGGATA 377941 Query 62789 ATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACC-ACATCCTTCA 62847 | | || | ||| |||||||| || |||||| || | | ||| | || || |||| Sbjct 377942 AAAGTTGACATCAATAATTTTGTTCAGATTT-TGTGTAACAGTTTTAGTTACTTCTTTCA 378000 Query 62848 GTTTGAGAAAATCAAATCGCCCATCTATTACAAACATGTTCAAGGCAACAGATGCCAGAT 62907 |||| ||||| ||| | | |||||||| || | || | || || |||| Sbjct 378001 GTTTTTTGAAATCGAATTTTTTGTTTTCAACAAACATATTTAGAGCTATTGAGGCGAGAT 378060 Query 62908 TACAAACGGCTACCTCATTAGCATCCGC---ATATTGTATTATCTCAGTGCAAAGATTAC 62964 | || ||||| ||||||| | |||| ||||| | || ||||| || | ||||| Sbjct 378061 TGCACACGGCAACCTCAT---CTTCCGATGTATATTCAACAATTTCAGTACACAAATTAC 378117 Query 62965 TACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 63024 | || ||||||||||| | ||||| ||||||||| ||| ||||||| ||||| || || | Sbjct 378118 TGCATTTGATAGTTCCAAGATTTTTTTGATTACTTTTTCTGTTACATGCATCTTTGTACA 378177 Query 63025 GAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAG 63084 | ||| |||||||||||||||| | || | ||| ||||| |||||||| | | ||| Sbjct 378178 GCATGTATGGAGTACCAGTTTCGACTTGCGCTTCAATAATGGCTTTCCATAATATCTGAG 378237 Query 63085 CCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACT 63144 | || | |||| ||||| ||| ||| |||||| ||| || | Sbjct 378238 CGCGTACTTGCCTGACAAATCTGTTTTCTTGTTCATATTTCTCATACAACGCTTCAAATT 378297 Query 63145 CGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTC 63204 | || || || || | | || ||||| | || |||||||||| ||| | | Sbjct 378298 CTTCACCGTAACAATCATAAAGCCCTGGACAGTTATGGGGACACATCAGACTCCAATTTT 378357 Query 63205 CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 63264 | | || || | ||||| || | ||| || ||||| ||||| ||| | |||| Sbjct 378358 CATTTCTCTCAACCCTCTTCATGAACAAATCTGGTATCCATAGAGCATAAAACAATTCTC 378417 Query 63265 TGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 63324 ||| || ||| || |||||||| ||||| || | ||| | ||| | | ||||||| Sbjct 378418 TGGCCCTCACTTCTTCCTTTCCTGTGTTCTTCTTTAAATCCAAAAACTCGAAGATATCAG 378477 Query 63325 AATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTA 63384 |||||||||| |||| || ||||| | |||| || ||||| || || || ||||| | Sbjct 378478 AATGCCACGGCTCCACATAGATGGCGAATGCTCCCGGACGTTTATTGCCCCCTTGATCAA 378537 Query 63385 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCAT 63444 ||||| || ||||||||||| || |||||||| |||| | || ||||| ||||||| Sbjct 378538 CATATCTTGCTGTGTTATTATACACCCTCAACATCGGAACGAGTCCATTTGAAATACCAT 378597 Query 63445 TGGTACC 63451 | ||||| Sbjct 378598 TTGTACC 378604 >seq149 Length=636072 Score = 125 bits (138), Expect = 9e-24 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 33569 TAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCT 33628 ||| ||| ||||| |||| ||| |||||||||||| |||| ||||| || || |||| Sbjct 239134 TAATATATGTATCAATCAGAAGTGAATACATTTCCGAGTGAACATTTTCCATAGCAATCT 239075 Query 33629 GAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCA 33688 | || || ||||| ||||| ||||| || | ||| ||||| | || ||||| | | Sbjct 239074 GGAAACCATAGAAGCATCTCGCCTCAGTCACCTGAACTTCCTGGGAGAAGCGTTCTACGA 239015 Query 33689 AATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 33748 ||| ||||| ||||| || || || |||||||||||||||||||| || ||||| | Sbjct 239014 GATTCTCATTTACTATACCATCTGATGCCGCAAAAAACGCCAATACATGCTTAATAAAGT 238955 Query 33749 ATTTTTC 33755 | |||| Sbjct 238954 GTCTTTC 238948 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 33790 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTC 33849 ||||||| || |||||||| || ||||| || || ||||||||||| || ||||| | | Sbjct 238709 TTAGATAAGTCAACTTCTTCAACAGTCCAGAAAGAAGCCTCTGCCTTCTTGTACATTTGC 238650 Query 33850 CAGATGTCATAATATTGGATTGGGAAAATAACAAATC 33886 || || ||| ||| ||||| ||||| |||||||||| Sbjct 238649 CATATATCAGGATACTGGATGGGGAATATAACAAATC 238613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622905189998200