Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq445 260 1e-64 seq221 109 5e-19 seq131 100 2e-16 seq64 86.0 5e-12 >seq445 Length=79264 Score = 260 bits (288), Expect = 1e-64 Identities = 657/988 (66%), Gaps = 23/988 (2%) Strand=Plus/Minus Query 32177 GCGTATTTTGTAGAATGGGGCGTGTACGGGCGCAATTTCCCAATAGACAAAGTGCCGTTG 32236 || || || || |||||||| || ||| | || ||||| | || |||||| | Sbjct 27713 GCTTACTTCGTTGAATGGGGTGTATACCCCAGGAAATTCCCCGTCGATCGTGTGCCGATT 27654 Query 32237 CCCAATTTGTCGCATCTGTTGTACGGATTTATTCCTATTTGCGGCGGCGACGGACTAAAC 32296 || ||| | | ||||| | ||||| || || || || || || || || || | || Sbjct 27653 CCAAATCTCACACATCTTCTTTACGGTTTCATACCGATATGTGGGGGTGATGGCATTAAT 27594 Query 32297 GATGCCCTCAAAACGATACCG--GGCAGTTTTGAGGCGCTGCAACGTTCGTGCAAAGGCC 32354 || | | ||| || | || || |||||| | || || || ||||| |||| || | Sbjct 27593 GA--CAGTTTAAAAGAAATCGAGGGAAGTTTTCAAGCACTACAGCGTTCATGCAGTGGTC 27536 Query 32355 GCGCAGACTTTAAGGTTGCCATTCACGACCCTTGGGCCGCAATACAAAAACCGCAGAAGG 32414 | | ||| ||||||||| |||| || || |||||||| || |||| ||||| || | | Sbjct 27535 GGGAAGATTTTAAGGTTTCCATCCATGATCCTTGGGCTGCTTTACAGAAACCTCAAAGAG 27476 Query 32415 GCGTGTCTGCGTGGAACGAACCCTACAAAGGCAACTTTGGCCAATTGATGGCGGCCAAGT 32474 | | || | ||||| ||||| || |||||||| ||||| ||||||||| | || Sbjct 27475 GTCTATCCTCCTGGAATGAACCTTATAAAGGCAATTTTGGTCAATTGATGTCATTGAAAC 27416 Query 32475 TGGCAAACCCTCACATAAAAATTTTACCATCTATTGGCGGGTGGACGTTGTCGGATCCCT 32534 || || || || | || ||||||||||| ||||| |||||||| || | ||| ||| Sbjct 27415 AAGCTAAACCAGACTTGAAGATTTTACCATCAATTGGTGGGTGGACTTTAGCTGAT-CCT 27357 Query 32535 TTTATTTTATGCAC-GACGCGGAAAAACGGCACGTGTTTGTCGATTCCGTCAAAGAGTT- 32592 || | || | ||| || | || || || ||||| || || || ||||| || Sbjct 27356 TTCTTCTTCTTCACTGATAAGAGTAAGCGACAGCGATTTGTAGAATCTGTTAAAGATTTC 27297 Query 32593 -TTTACAGGTTTGGAAATTCTTTGACGGAGTGGACATTGATTGGGAGTTCCCGGGCGGCA 32651 ||| | ||||||||||||||||| || || ||||| ||||||||||| || || | Sbjct 27296 CTTTTAA--CCTGGAAATTCTTTGACGGTGTTGATATTGACTGGGAGTTCCCTGGTGGTA 27239 Query 32652 AAGGTGCCAACCCGGCGCTCGGTAACGGGGAGCGCGACGCGCACACGTACATTATTTTGT 32711 ||||||| ||||| | ||||| | | || || | ||| ||| |||| Sbjct 27238 AAGGTGCTAACCCAGACCTCGGAAGCCCAGA---AGATGGTGCTGTTTACGTTAGTTTGA 27182 Query 32712 TACAAGAATTGCGTTCTATGCTGGACGACCTTCAATTGCAA--ACGGGCAAAACGTACGA 32769 | ||||||| ||| ||||| || || || | ||| | || || ||||||||||| Sbjct 27181 TGGAAGAATTACGTGAAATGCTTGATGA--TTTATCTGCTACCACTGGTAAAACGTACGA 27124 Query 32770 GTTGACTAGCGCAATTAGTGCCGGCCACGACAAAATTGCTGTGGTGCAATATGAAGCCGC 32829 |||| ||||| ||||| || ||||||||| || || | || | | || Sbjct 27123 ACTGACCTCAGCAATCAGTGCTGGATGGGACAAAATTCAGGTTGTCGATTACGCAAAAGC 27064 Query 32830 GCAAAAGTACCTCGATAAAATATTTCTCATGAGTTACGACTTTAAAGGGGCATGGTCTAA 32889 |||| | ||| | || | || || | ||||||||||| || ||||| |||||||| || Sbjct 27063 GCAACAATACATGGACCACATTTTCGTTATGAGTTACGATTTCAAAGGAGCATGGTCAAA 27004 Query 32890 CACCGATTTGGGCTATCAGACCACTTTGTACGCTCCAAGTTGGAATCCCGATGAATTGTA 32949 |||||| |||| || | ||||| || || |||||||| | || || Sbjct 27003 TGATACTTTGGGACATCAAACTCCGTTGTATGCACCGGCATGGAATCCTAAAGAGACTTA 26944 Query 32950 CACCACAGATCACGCTGTTAAA---TTGTTAACAAGTCAAGGTGTAGCTTCTTACAAAAT 33006 ||| || || || ||| ||| |||||| | ||||||||| | | | || || Sbjct 26943 CACAACCGACTTCGGTGTGAAATATTTGTTAGC---TCAAGGTGTGTCACCGAAAAAGAT 26887 Query 33007 CATTGTCGGCATCGCCATGTACGGTCGCGGGTGGACGGGCGTGGCTGGTTATGACGGCGA 33066 | | || || | || ||||| ||||| || ||||| || || |||||| || || | Sbjct 26886 CGTAGTTGGTGTTGCTATGTATGGTCGAGGATGGACTGGGGTTAATGGTTACGAGGGAAA 26827 Query 33067 TAAttttttttCGGGTACTGCGAAAGGCCCCATTTCGGGCACGTGGGAAAACGGAGTTGT 33126 |||| || | || | ||| | || || | || || ||| || |||| ||| | Sbjct 26826 TAATCCATTCACAGGCAATGCTACTGGACCAGTCAAAGGAACATGGCAAGACGGTGTTAT 26767 Query 33127 TGACTATCGCCAAATTAAAAACGAATTA 33154 ||| ||| | |||| |||||| || Sbjct 26766 TGATTATAGAGAAATCGCCAACGAAATA 26739 >seq221 Length=486136 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| |||||||| |||||||| || ||||| ||||| || | ||| || | Sbjct 79485 AAAATGCAGATTTTTGTAAAAACGCTTACTGGAAAGACCATAACTTTGGAAGTCGAACCT 79426 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || ||| ||| | | || ||| |||||| || ||||| || |||| ||| Sbjct 79425 TCGGATACTATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAGGGAATCCCACCAGAT 79366 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 |||||| || | || | ||| || |||||||| || || | || | ||||||| Sbjct 79365 CAGCAACGATTGATCTTTGCAGGAAAACAATTGGAGGACGGACGTACTCTTTCCGATTAC 79306 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||||||||||||||| | ||| | || ||| | | || ||||| Sbjct 79305 AACATTCAAAAAGAGTCTACTCTTCATCTTGTTTTGCGTCTTCGCGGAGG 79256 >seq131 Length=856804 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| | || |||||||| || || | ||| || || | Sbjct 308111 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308052 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | || || || ||| || || || || ||||| | ||| || || Sbjct 308051 GACAC-GATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCA 307993 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| |||||||| | ||| ||||| || |||||||||| ||| || | |||||||| Sbjct 307992 GCAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTATAA 307933 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 ||||||||| || || || | || | || | ||||||||||| ||| Sbjct 307932 CATTCAAAAGGAATCAACCCTGCACTTAGTACTAAGATTGCGAGGGGGA 307884 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| | || |||||||| || || | ||| || || | Sbjct 308339 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308280 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | || || || ||| || || || || ||||| | ||| || || Sbjct 308279 GACAC-GATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCA 308221 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| |||||||| | ||| ||||| || |||||||||| ||| || | ||||| || Sbjct 308220 GCAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAA 308161 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||| || || || | || |||| | |||||| ||||||| Sbjct 308160 CATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGG 308113 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| | || |||||||| || || | ||| || || | Sbjct 308567 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308508 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | || || || ||| || || || || ||||| | ||| || || Sbjct 308507 GACAC-GATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCA 308449 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| |||||||| | ||| ||||| || |||||||||| ||| || | ||||| || Sbjct 308448 GCAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAA 308389 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||| || || || | || |||| | |||||| ||||||| Sbjct 308388 CATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGG 308341 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| | || |||||||| || || | ||| || || | Sbjct 308795 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308736 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | || || || ||| || || || || ||||| | ||| || || Sbjct 308735 GACAC-GATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCA 308677 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| |||||||| | ||| ||||| || |||||||||| ||| || | ||||| || Sbjct 308676 GCAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAA 308617 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||| || || || | || |||| | |||||| ||||||| Sbjct 308616 CATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGG 308569 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| |||||||| ||||| | || || ||||| || || | ||| || || Sbjct 309026 AAGATGCAGATTTTTGTGAAAACCTTAACTGGCAAAACGATCACTTTGGAAGTTGAACCC 308967 Query 115343 AGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 |||||| | | || || || ||| ||||| || || ||||| | ||| || Sbjct 308966 TCCGACAC-GATCGAGAATGTTAAAGCTAAAATCCAGGACAAGGAAGGAATTCCCCCAGA 308908 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||||| |||||||| | ||| ||||| || |||||||||| ||| || | ||||| Sbjct 308907 CCAGCAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTA 308848 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||||| || || || | || |||| | |||||| ||||||| Sbjct 308847 CAACATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGG 308797 >seq64 Length=1946208 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| ||||| || || || || ||||| |||||||||||| | || ||| || Sbjct 785930 AAAATGCAGATTTTCGTTAAGACCCTAACGGGTAAAACCATTACCCTAGAGGTTGAGGCC 785871 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 ||||| | | | ||||| || || || || ||||| | || ||| Sbjct 785870 TCTGACACCATCGAGAATGTAAAGGCCAAGATCCAAGACAAGGAAGGTATTCCACCAGAT 785811 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| || | || | || || |||||||| ||||||| ||| | |||| || Sbjct 785810 CAGCAGCGATTGATATTCGCTGGAAAACAATTGGAAGATGGTCGTACCTTATCCGACTAC 785751 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || |||||||| || ||||| | ||| | ||||||||| | ||||||| Sbjct 785750 AATATTCAAAAGGAATCTACCTTGCATCTTGTGTTGAGACTTAGAGGAGG 785701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425316032967400