Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq445 219 3e-52 seq221 100 2e-16 seq131 93.3 3e-14 >seq445 Length=79264 Score = 219 bits (242), Expect = 3e-52 Identities = 728/1109 (66%), Gaps = 34/1109 (3%) Strand=Plus/Plus Query 96026 TATTTCGTTTTTGATTTGGCGATAATCAACAACGCCATCTTCCCAAGTGCCCGAAACGGG 96085 ||||||||| ||||| | |||||||| ||| || |||| ||| || || || || Sbjct 26739 TATTTCGTTGGCGATTTCTCTATAATCAATAACACCGTCTTGCCATGTTCCTTTGACTGG 26798 Query 96086 CCCGTTACTACTTCCCAAAAAATAG-TTATCGTTTTCGTAATTTGACACTCCAGTCCAGC 96144 || || | || || ||| | |||| |||||| || |||||||| | Sbjct 26799 TCCAGTAGCA-TTGCCTGTGAATGGATTATTTCCCTCGTAACCATTAACCCCAGTCCATC 26857 Query 96145 CGCGACCGTACATGGCCACGCCCACAATAATTTTGCGCGGGTCCACGCCTTGATTTGTGA 96204 | ||||| ||||| || || || || | || || ||| ||| |||||| | | Sbjct 26858 CTCGACCATACATAGCAACACCAACTACGATCTTTTTCGGTGACACACCTTGAGCTAACA 26917 Query 96205 GCAATTTAACGGCATGGTCCGTGTTGTACAGCTCGTTTGGGTTCCAACTCGGCGCGTACA 96264 |||| || | ||| || |||| ||| || || ||||| ||| || |||| Sbjct 26918 AATATTTCACACCGAAGTCGGTTGTGTAAGTCTCTTTAGGATTCCATGCCGGTGCATACA 26977 Query 96265 GTGTAGTTTGGTATCCCAAATCAATGTTTGACCACGCGCCTTTAAAATCGTAGCTCATGA 96324 | |||||| | ||||||| | |||||||| || ||||| |||||||| ||||| | Sbjct 26978 ACGGAGTTTGATGTCCCAAAGTATCATTTGACCATGCTCCTTTGAAATCGTAACTCATAA 27037 Query 96325 GAAATATTTTGTCGAGGAACTTTTGCGCAACGTCGTATTTTACTACAGCAATTTTGTCGT 96384 || || | ||| | | | | |||||| |||| | || || ||||||||| Sbjct 27038 CGAAAATGTGGTCCATGTATTGTTGCGCTTTTGCGTAATCGACAACCTGAATTTTGTCCC 27097 Query 96385 GGCCGGCACTGATTGCACTTGTCAACTCGTACGTTTTGCCCGT--TTGCAGTTGCAACTC 96442 || ||||||||||| |||| ||||||||||| || || | |||| | || || Sbjct 27098 ATCCAGCACTGATTGCTGAGGTCAGTTCGTACGTTTTACCAGTGGTAGCAGAT--AAATC 27155 Query 96443 GTCTAACATCACGCGCAATTCCTTTAATAGAATGTTGTACGTGTCAGCGTCGCGCTCTTT 96502 || | ||| | || ||||| | | | | | ||| |||| | ||| Sbjct 27156 ATCAAGCATTTCACGTAATTCTTCCATCAAACTAACGTA---AACAGCACCATCTTCTGG 27212 Query 96503 GTTGCCGAGCGTC-GGGTTGGCGCCTTTACCGCCCGGAAATTCCCAGTCGATGTCCACTC 96561 | | ||||| ||| ||||| || |||||||| || || || |||||||| || || || | Sbjct 27213 GCTTCCGAG-GTCTGGGTTAGCACCTTTACCACCAGGGAACTCCCAGTCAATATCAACAC 27271 Query 96562 CGTCGAAAAATTTCCAAACCTGCAAA--AATTCTCTGACGGAGTCTACAAACACGC-GCC 96618 |||| || ||||||| | | ||| || ||| | || || |||||||| ||| | | Sbjct 27272 CGTCAAAGAATTTCC--AGGTTAAAAGGAAATCTTTAACAGATTCTACAAA-TCGCTGTC 27328 Query 96619 GTTTTTCCGCGTC-GTGCATGTAATAGAACGGGTCGGACAGTGTCCAGCCGCCGATAGAC 96677 | || | || ||| | | | |||| || || | | ||||| || || || || Sbjct 27329 GCTTACTCTTATCAGTG-AAGAAGAAGAAAGGATCAGCTAAAGTCCACCCACCAATTGAT 27387 Query 96678 GGCAGAATTTTAAGGTGTGGATTAGCCAGTTTGGCCGCCATCAACTGACCAAAGTTGCCT 96737 || | ||| || | || ||| ||||| |||| | |||||| |||||||| |||||| Sbjct 27388 GGTAAAATCTTCAAGTCTGGTTTAGCTTGTTTCAATGACATCAATTGACCAAAATTGCCT 27447 Query 96738 TTGTAGGGCTCGTTCCAAGCAGACACGCCCTTTTGCGGTTTTTGTACTGCGGCCCAAGGG 96797 || || || || ||||| | || | || |||| ||||| |||| || |||||||| Sbjct 27448 TTATAAGGTTCATTCCAGGAGGATAGACCTCTTTGAGGTTTCTGTAAAGCAGCCCAAGGA 27507 Query 96798 TCGTGAATAGCAACTTTAAAATCTGAACGGCCCTGGCAAGAGCGTTGCAGCGCTTCAAAA 96857 || || || | ||| ||||||||| || || ||| || || || || |||| |||| Sbjct 27508 TCATGGATGGAAACCTTAAAATCTTCCCGACCACTGCATGAACGCTGTAGTGCTTGAAAA 27567 Query 96858 CTACC--GGGTATGGTTTTAAGGGCATCGTTAAGGCCGTCGCCGCCACAAATGGGTATAA 96915 || || | | | ||| || | || |||| ||| || || ||||| || ||||| | Sbjct 27568 CTTCCCTCGATTTCTTTTAAACTG--TCATTAATGCCATCACCCCCACATATCGGTATGA 27625 Query 96916 ACCCGTACAACAAATGTGACAAGTTGGGCAGCGGCACTTTGTCCACCGGAAAGTTACGAC 96975 | ||||| | | ||||| | || || | |||||| || || || || || | Sbjct 27626 AACCGTAAAGAAGATGTGTGAGATTTGGAATCGGCACACGATCGACGGGGAATTTCCTGG 27685 Query 96976 CATACACGCCCCATTCCACAAAATACGCAGCGATGGTTTTGTCTTGGCGTCGGTT----A 97031 || || |||||||| || || || || | | | ||| | | ||| ||| Sbjct 27686 GGTATACACCCCATTCAACGAAGTAAGCTCCAACGACTTT-ACCAGACGTTTGTTTGAAT 27744 Query 97032 GGTTTGT--TATTCTCCCGCCAAATGTATTCCAGCGGGGACAGATGACCACCGTCCGTGT 97089 ||||||| | ||||||| || ||||| | ||| | ||||||| ||||| |||| Sbjct 27745 GGTTTGTTCTTTTCTCCCATTGAA--TATTCTAACGGTGGAAGATGACTTCCGTCGGTGT 27802 Query 97090 CCGCAACTTTAA-CTAAGACAGGTTCACT 97117 | |||| | || || || ||||||||| Sbjct 27803 CAGCAATTACAATCTCAG-TAGGTTCACT 27830 >seq221 Length=486136 Score = 100 bits (110), Expect = 2e-16 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | ||| || || ||||| ||||| |||||||| |||| Sbjct 79256 CCTCCGCGAAGACGCAAAACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAA 79315 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || |||||||||||||||| || ||| | || | || || || || || Sbjct 79316 AGAGTACGTCCGTCCTCCAATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGTGGG 79375 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| ||||| ||| || || | | | ||| || || || Sbjct 79376 ATTCCCTCTTTGTCTTGAATTTTGGCT--TTAACATTTTCAATAGTATCCGAAGGTTCGA 79433 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 ||||| || ||||| ||||| || |||||||| |||||||||||||||||| Sbjct 79434 CTTCCAAAGTTATGGTCTTTCCAGTAAGCGTTTTTACAAAAATCTGCATTTTG 79486 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||||| || |||||||| || ||||||||||| | | || | |||| Sbjct 78359 AGAACTAAATGCAAGGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCGTCT 78418 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || || || ||| | || || ||||||||||| ||| | ||| || ||||| Sbjct 78419 TCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCT 78478 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| ||| || | | | |||||| ||| || ||| | |||||||| Sbjct 78479 TGGATTTTTGC--CTTTACATTCTCTATGGTGTCGGAGGGTTCGACTTCTAGGGTGATGG 78536 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || |||| || ||||| || |||||||| Sbjct 78537 TTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 78570 >seq131 Length=856804 Score = 93.3 bits (102), Expect = 3e-14 Identities = 165/238 (69%), Gaps = 12/238 (5%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||||| | || ||||||| ||||| || || |||||||| |||||||| || | Sbjct 308796 CCCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGA 308855 Query 16768 CATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCA 16823 || ||| |||||| || || || ||||| ||| | ||||| | ||| ||||| Sbjct 308856 CAGGGT----GCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTG 308911 Query 16824 CAGGCACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGG 16881 || | || || ||||| |||| ||| || || | | | |||||| ||| Sbjct 308912 GGGGAATTCCTTCCTTGTCCTGGATTTTAGCT--TTAACATTCTCGATCGTGTCGGAGGG 308969 Query 16882 CTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || ||||| ||||| ||||| || || | ||||| |||||||||||||| ||| Sbjct 308970 TTCAACTTCCAAAGTGATCGTTTTGCCAGTTAAGGTTTTCACAAAAATCTGCATCTTG 309027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405061364831050