Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq232 161 7e-35 seq318 140 2e-28 seq221 125 5e-24 seq131 118 7e-22 seq64 105 4e-18 >seq232 Length=741139 Score = 161 bits (178), Expect = 7e-35 Identities = 130/157 (83%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||||| | ||||||| || || || || |||||||| |||||||| ||||| |||||| Sbjct 27986 ATGGGGTCGGTGAACGTGAACCGCAACGTCGCGGACGCCTTCTACCGGTACAAGATGCCG 27927 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 ||||||||||||||||||||||| ||||| ||||| || || || ||||| ||||||||| Sbjct 27926 CGCATCTGCGCCAAGGTCGAGGGGAAGGGGAACGGCATCAAGACGGTCATCGTCAACATG 27867 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCT 6318 || || || || ||||||||||| | || || |||| Sbjct 27866 CCCGAGGTGGCCAAGGCGCTCGGCAGACCGGCGACCT 27830 Score = 159 bits (176), Expect = 2e-34 Identities = 135/166 (81%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 6436 GCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTG 6495 |||| || |||||||| |||||||| | ||| || || ||||| ||||| ||||| || | Sbjct 27420 GCTTCATCCGCAAGTTCGTGCTGTGCCCGGAGTGTGACAACCCTGAGACGGAGCTGATCG 27361 Query 6496 TGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAGC 6555 |||| |||||| | ||||||||||| ||||||||||| |||||||||||||| |||| | Sbjct 27360 TGTCCACCAAGCGGAACACCATCTCCCAGGGCTGCAAGGCGTGCGGTTACCACGGCACCC 27301 Query 6556 TGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCC 6601 |||| || ||||| || ||||||||||| || ||||| || || Sbjct 27300 TGGACTTCAACCACAAGCTGAACACCTTCATCCTCAAGAACCCGCC 27255 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 ||||| || || ||||| ||||| || ||||| ||||| ||||| || |||||||||| Sbjct 27618 CCGACCAAGTACTTCGGCTGCGAGCTGGGCGCCCAGACTCAGTTCGACTTCAAAAACGAG 27559 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGG 6436 |||||||| || ||||| || |||| |||||||| ||||| | || ||||| Sbjct 27558 CGCTTCATAGTGAACGGCAGCCACGACTCCGCCAAGCTACAGGATCTGCTGGACGG 27503 >seq318 Length=176241 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 4880 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGCGGGAATCTCGT 4939 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 4940 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 4974 Score = 140 bits (154), Expect = 2e-28 Identities = 77/77 (100%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7376 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 7435 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||||||| Sbjct 7436 GGTAATATTTAGCCTTA 7452 >seq221 Length=486136 Score = 125 bits (138), Expect = 5e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | | |||||| || | ||||||||| ||| |||||||| |||||||| | Sbjct 79254 TACCTCCGCGAAGACGCAAAACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATCGG 79313 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | |||| |||| || ||||||||||| ||||| || | ||||| ||||| | | Sbjct 79314 AAAGAGTACGTCCGTCCTCCAATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGTG 79373 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || |||||||| |||||| || ||||| | | |||||| | ||| | Sbjct 79374 GGATTCCCTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATAGTATCCGAAGGTTCGA 79433 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||| || || || || || || || | ||||| || || |||||||| || Sbjct 79434 CTTCCAAAGTTATGGTCTTTCCAGTAAGCGTTTTTACAAAAATCTGCATTTT 79485 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | || | ||| || || ||||| || || ||||| || | Sbjct 79026 TACCACCACGCAGACGTAGTACGAGATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCGG 79085 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | ||| | || ||||||||||| || || || || | ||||||||||| | || Sbjct 79086 AGAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGGG 79145 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||| ||||| ||||| |||||| || | | |||||| | || | Sbjct 79146 GGATGCCTTCCTTGTCTTGGATTTTAGCCTTCACGTTTTCAATAGTATCAGAAGGCTCTA 79205 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| || |||||||||||||| | |||||| || || |||||||| Sbjct 79206 CCTCTAACGTTATAGTTTTACCCGTAAGGGTTTTAACAAAGATCTGCAT 79254 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | ||| || | || | ||| || || ||||| || || ||||| |||| Sbjct 78798 TACCACCACGCAATCGTAGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAG 78857 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| |||| || | || || || ||||| || || || ||||| |||| | Sbjct 78858 AAAGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAG 78917 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||||||||| ||||| || ||||||| | || ||| | ||| | Sbjct 78918 GGATACCTTCTTTGTCTTGGATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGA 78977 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| || || ||||| || |||||||| || ||||| |||||||| Sbjct 78978 CTTCTAAGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 79026 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | ||| || | || | ||| || || ||||| || || ||||| |||| Sbjct 78570 TACCACCACGCAATCGTAGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAG 78629 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| |||| || | || || || ||||| || || || ||||| |||| | Sbjct 78630 AAAGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAG 78689 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||||||||| ||||| || ||||||| | || ||| | ||| | Sbjct 78690 GGATACCTTCTTTGTCTTGGATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGA 78749 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||| || || ||||| || |||||||| || ||||| |||||||| Sbjct 78750 CTTCTAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 78798 >seq131 Length=856804 Score = 118 bits (130), Expect = 7e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || |||||||| | | ||||| || || || ||||||||||| |||||||||||| Sbjct 308797 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308856 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| | || ||||| || || |||||||| || || | || || || | ||| Sbjct 308857 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308916 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| |||||| ||||| || ||||||| || || || ||||||| Sbjct 308917 ATTCCTTCCTTGTCCTGGATTTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308976 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || || || ||||| || || ||||||||||| || |||||||| || Sbjct 308977 TCCAAAGTGATCGTTTTGCCAGTTAAGGTTTTCACAAAAATCTGCATCTT 309026 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || |||||||| | | ||||| || || || ||||||||||| |||||||||||| Sbjct 308113 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308172 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| | || ||||| || || |||||||| || || | || || || | ||| Sbjct 308173 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308232 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| |||||| || || || ||||||| || || || ||||||| Sbjct 308233 ATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308292 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || ||||| || || || ||||| || || || ||||| Sbjct 308293 TCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308339 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || |||||||| | | ||||| || || || ||||||||||| |||||||||||| Sbjct 308341 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308400 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| | || ||||| || || |||||||| || || | || || || | ||| Sbjct 308401 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308460 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| |||||| || || || ||||||| || || || ||||||| Sbjct 308461 ATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308520 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || ||||| || || || ||||| || || || ||||| Sbjct 308521 TCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308567 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || |||||||| | | ||||| || || || ||||||||||| |||||||||||| Sbjct 308569 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308628 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| | || ||||| || || |||||||| || || | || || || | ||| Sbjct 308629 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308688 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| |||||| || || || ||||||| || || || ||||||| Sbjct 308689 ATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308748 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || ||||| || || || ||||| || || || ||||| Sbjct 308749 TCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308795 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||||||||| || |||||||||| ||| | || ||||| || || |||||||| Sbjct 307921 TCCTTTTGAATGTTATAATCAGACAGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAG 307980 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || || | || || || | ||| | ||||| |||||| || || || |||||| Sbjct 307981 ATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTC 308040 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | || || || ||||||||| || || || ||||| || || || ||||| || Sbjct 308041 TCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACA 308100 Query 38307 AATATCTGCAT 38317 || || ||||| Sbjct 308101 AAGATTTGCAT 308111 >seq64 Length=1946208 Score = 105 bits (116), Expect = 4e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| ||||| | | |||||| | ||| | || ||||||||||||||||| || || Sbjct 785700 ACCTCCTCTAAGTCTCAACACAAGATGCAAGGTAGATTCCTTTTGAATATTGTAGTCGGA 785759 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || ||| | || || ||||||||||| || ||||| | || || ||||| | || Sbjct 785760 TAAGGTACGACCATCTTCCAATTGTTTTCCAGCGAATATCAATCGCTGCTGATCTGGTGG 785819 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| ||||| || || ||| ||||||| || || || ||||| Sbjct 785820 AATACCTTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCAGAGGCCTCAAC 785879 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||| ||||| ||||||||||| | ||| || ||||| |||||||| || Sbjct 785880 CTCTAGGGTAATGGTTTTACCCGTTAGGGTCTTAACGAAAATCTGCATTTT 785930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334925176698245