Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq445 201 1e-46 seq10 100 3e-16 >seq445 Length=79264 Score = 201 bits (222), Expect = 1e-46 Identities = 482/720 (67%), Gaps = 17/720 (2%) Strand=Plus/Plus Query 51726 TTGGACCACGCACCCTTGAAATCGTAGTTCATGAGGAAAATGTAATCCAACTGCGTCTGC 51785 || ||||| || || ||||||||||| |||| | |||||||| |||| | ||| Sbjct 27004 TTTGACCATGCTCCTTTGAAATCGTAACTCATAACGAAAATGTGGTCCATGTATTGTTGC 27063 Query 51786 GCCCGAGCGTAGTCGACGACTTGAATTTTATCGTAGCCCGCGCTGATGGCGCTGGTCAAC 51845 || ||||| ||||| || |||||||| || | || || ||||| || ||||| Sbjct 27064 GCTTTTGCGTAATCGACAACCTGAATTTTGTCCCATCCAGCACTGATTGCTGAGGTCA-- 27121 Query 51846 AGGTACGAACGGTTC----GTGGCGGCGCTCAACTCGTCGAGCATGTCGCGCAGCTCGGT 51901 || || ||| || |||| || || || || ||||| || || | || Sbjct 27122 --GTTCGTACGTTTTACCAGTGGTAGCAGATAAATCATCAAGCATTTCACGTAATTCTTC 27179 Query 51902 CAAAAGCGTCACGTACGTCGCACCATCGCGATCGGGATCGCCCAGGTCGGGATTGGCGCC 51961 || | | ||||| |||||||| || || || ||||| || || || || Sbjct 27180 CATCAAACTAACGTAAACAGCACCATCT---TCTGGGCTTCCGAGGTCTGGGTTAGCACC 27236 Query 51962 TTTGCCGCCCGGAAACTCCCAGTCGACGTCGACTCCGTCGAAGAACTTCCAAGTCAGCAG 52021 ||| || || || ||||||||||| | || || ||||| ||||| ||||| || | || Sbjct 27237 TTTACCACCAGGGAACTCCCAGTCAATATCAACACCGTCAAAGAATTTCCAGGTTAAAAG 27296 Query 52022 AAACTCGCGAACCGATTCGACGAA-GGTTGCGCGTTTGCTCGCGTC-GTGCAGGAAGAAG 52079 || || ||| ||||| || || | || || || ||| || ||| | ||||||| Sbjct 27297 GAAATCTTTAACAGATTCTACAAATCGCTG-TCGCTTACTCTTATCAGTG-AAGAAGAAG 27354 Query 52080 AACGGATCGGACAGCGTCCAACCGCCGATCGAGGGCAGAATCTTGAGCGAAGGATTGGCC 52139 || ||||| | | ||||| || || || || || | |||||| | || || || Sbjct 27355 AAAGGATCAGCTAAAGTCCACCCACCAATTGATGGTAAAATCTTCAAGTCTGGTTTAGCT 27414 Query 52140 CGTTTGGCCGCCATCAGCTGTCCAAAGTTTCCCTTGTACGGATCGTTCCAGGCCGAGACG 52199 |||| | ||||| || ||||| || || || || || || ||||||| || | Sbjct 27415 TGTTTCAATGACATCAATTGACCAAAATTGCCTTTATAAGGTTCATTCCAGGAGGATAGA 27474 Query 52200 CCTTTCTGCGGTTTCTGCAGCGCCGCCCAGGGATCGTGAATCGTCACCTTAAAGTCCGAC 52259 ||| | || |||||||| | || ||||| ||||| || || | |||||||| | | | Sbjct 27475 CCTCTTTGAGGTTTCTGTAAAGCAGCCCAAGGATCATGGATGGAAACCTTAAAAT-CTTC 27533 Query 52260 CTGCCCAC-GCACGACCGTTGCAACGCTTCGAAACTGTTGTCGATCGGTTTCAGGCTGTC 52318 | | |||| ||| || || || | |||| ||||| ||||| ||| | ||||| Sbjct 27534 CCGACCACTGCATGAACGCTGTAGTGCTTGAAAACTTCCCTCGATTTCTTTTAAACTGTC 27593 Query 52319 GTTGATGCCGTCGCCTCCGCACATGGGAATGAAGCCGTACAGCAGATGCGACAGGTTCGG 52378 || ||||| || || || || || || ||||| ||||| || ||||| | || || || Sbjct 27594 ATTAATGCCATCACCCCCACATATCGGTATGAAACCGTAAAGAAGATGTGTGAGATTTGG 27653 Query 52379 CAACGGCACCAGATCTACGGGAAAGTTGCGCAAGTAAACGCCCCATTCGACAAAGTAGGC 52438 | |||||| |||| ||||| || || | ||| || |||||||| || ||||| || Sbjct 27654 AATCGGCACACGATCGACGGGGAATTTCCTGGGGTATACACCCCATTCAACGAAGTAAGC 27713 >seq10 Length=3673010 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38419 ACGCCCGACTGGTCACCTATAAATACTGGCCCAAGAGCATGAAGCAGACGCCGCAACAGT 38478 ||||||| ||| |||| | ||||||| ||| ||| |||| ||| || || Sbjct 115767 ACGCCCGCCTGAGAACCTTCAGCGACTGGCCGCGGAGTATGCGCCAGAAGCCCGAAGAGC 115708 Query 38479 TGGCCGAGGCCGGCTTCTACTATTCGGGCACCGGAGACCAGGTCAAATGTTTCTTTTGCG 38538 ||||||| ||||| |||| || | ||| || || | ||||| || || |||| Sbjct 115707 TGGCCGAAGCCGGATTCTTTTACACCGGCCAGGGTGATAAAACTAAATGCTTTTTCTGCG 115648 Query 38539 GCGGCGGCCTTAAGGACTGGGAGCCTGCGGACGATCCGTGGGCGCAGCACGCGCGCTGGT 38598 |||||| || |||||||||||| || |||| || |||| |||||||| || |||| Sbjct 115647 ACGGCGGTCTCAAGGACTGGGAGAATGACGACGTCCCCTGGGAACAGCACGCTCGTTGGT 115588 Query 38599 TCGACAGGTGCGCTTACGTGCTCACCGTCAAAGGC 38633 || |||||||||||||| | |||||| ||| Sbjct 115587 TCAGTAGGTGCGCTTACGTTCAGCTCGTCAAGGGC 115553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537566945384200