Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq149 178 1e-39 seq51 134 2e-26 seq21 134 2e-26 seq191 132 5e-26 seq48 129 7e-25 >seq149 Length=636072 Score = 178 bits (196), Expect = 1e-39 Identities = 167/210 (80%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || |||||||| || | || ||||||||||| || || ||||| ||||| ||||| ||| Sbjct 239132 ATATATGTATCAATCAGAAGTGAATACATTTCCGAGTGAACATTTTCCATAGCAATCTGG 239073 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || ||||| ||||| || || || | ||| ||||| || || || | ||||||||| Sbjct 239072 AAACCATAGAAGCATCTCGCCTCAGTCACCTGAACTTCCTGGGAGAAGCGTTCTACGAGA 239013 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || ||||| ||||||||||| ||||| |||||||| ||||||| |||||| ||||| ||| Sbjct 239012 TTCTCATTTACTATACCATCTGATGCCGCAAAAAACGCCAATACATGCTTAATAAAGTGT 238953 Query 93542 TTCTCATCAT-CTTTAAGCTTATCCCAATC 93570 | ||| | |||||| ||| |||||||| Sbjct 238952 CTTTCACAGTCCTTTAAACTT-TCCCAATC 238924 Score = 134 bits (148), Expect = 2e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173 |||| |||| || || | ||||| ||||| || ||||| || | || |||| |||| Sbjct 239461 CTTCATCTCTAGAAATGAGTTCATTACTGAAAGTCAAACCGGGCATGAGACCTCTCTTCT 239402 Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233 | | ||| || || ||||||||||||||||| || || || ||||| || || ||||||| Sbjct 239401 TCATCCAGAAGATAGAAGCAAAACTACCAGAGAAGAAAATCCCTTCAACAGCAGCAAATG 239342 Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGG 93293 | ||||| || || |||| | || | |||||| ||||| | | |||||||| | Sbjct 239341 CAACAATGCGCTCTCCAAATGTGGCCGTCTTACTGGCAATCCACTGAAGGGCCCAATCTG 239282 Query 93294 CTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATC 93342 | || ||||| | ||| |||| || || ||||| || || ||| |||| Sbjct 239281 CCTTCTTCTTTACACAGGGTAAAGTCTCAATAGCATTGAACAGGAAATC 239233 Score = 105 bits (116), Expect = 7e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 93590 TCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCT 93649 || |||||||| |||||||| || || || ||||| || |||||||| | |||||| || Sbjct 238700 TCAACTTCTTCAACAGTCCAGAAAGAAGCCTCTGCCTTCTTGTACATTTGCCATATATCA 238641 Query 93650 TGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTCTAGT 93709 |||| || || || ||||| ||||| ||| |||||| ||| | || | || |||| | Sbjct 238640 GGATACTGGATGGGGAATATAACAAATCGACGAGGGTTTTCTCTCAGCAGGGGTTCTAAT 238581 Query 93710 TGTGGGTCAAA 93720 ||||||||||| Sbjct 238580 TGTGGGTCAAA 238570 >seq51 Length=834498 Score = 134 bits (148), Expect = 2e-26 Identities = 93/103 (90%), Gaps = 3/103 (3%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 830969 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 831028 Query 126324 TGGGTTCGAACCCCACACCTGACAAAT-TATTATTGGAATTTT 126365 ||||||||||||||||||||||||||| |||| || ||||| Sbjct 831029 TGGGTTCGAACCCCACACCTGACAAATCTATTTTTTATATTTT 831071 >seq21 Length=1477614 Score = 134 bits (148), Expect = 2e-26 Identities = 88/95 (93%), Gaps = 3/95 (3%) Strand=Plus/Minus Query 126258 TATTTACA-GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-- 126314 ||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 549521 TATCTACAAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGA 549462 Query 126315 TCGGGAGCGTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||||||||| Sbjct 549461 GAGGGAGCGTGGGTTCGAACCCCACACCTGACAAA 549427 Score = 132 bits (146), Expect = 5e-26 Identities = 82/87 (94%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 556508 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 556449 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||| Sbjct 556448 GTGGGTTCGAACCCCACACCTGACAAA 556422 >seq191 Length=1043547 Score = 132 bits (146), Expect = 5e-26 Identities = 82/87 (94%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 566298 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGACAGGGAGC 566357 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||| Sbjct 566358 GTGGGTTCGAACCCCACACCTGACAAA 566384 Score = 132 bits (146), Expect = 5e-26 Identities = 82/87 (94%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 569854 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGACAGGGAGC 569913 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||| Sbjct 569914 GTGGGTTCGAACCCCACACCTGACAAA 569940 Score = 129 bits (142), Expect = 7e-25 Identities = 82/88 (93%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 555503 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGACAGGGAGC 555562 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||||||||||||| || Sbjct 555563 GTGGGTTCGAACCCCACACCTGACATAT 555590 >seq48 Length=2044893 Score = 129 bits (142), Expect = 7e-25 Identities = 82/88 (93%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 120207 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 120148 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||||||||||||| || Sbjct 120147 GTGGGTTCGAACCCCACACCTGACAGAT 120120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556823246699800