Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq221 104 2e-17 seq10 96.9 3e-15 >seq221 Length=486136 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 |||||||| |||||||| |||||| | || || || ||||| || ||||| ||||| Sbjct 79485 AAAATGCAGATTTTTGTAAAAACGCTTACTGGAAAGACCATAACTTTGGAAGTCGAACCT 79426 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 ||| || ||| | || ||| |||||| |||||||| || | || ||| Sbjct 79425 TCGGATACTATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAGGGAATCCCACCAGAT 79366 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 || ||| | | || | ||| || ||||||||||| || ||| | ||||||| Sbjct 79365 CAGCAACGATTGATCTTTGCAGGAAAACAATTGGAGGACGGACGTACTCTTTCCGATTAC 79306 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || |||||||| ||||| || ||| | || |||||||| ||||| || Sbjct 79305 AACATTCAAAAAGAGTCTACTCTTCATCTTGTTTTGCGTCTTCGCGGAGG 79256 >seq10 Length=3673010 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 105499 TGGCCGAAGCCGGTTTTTACTACACCGGCAAAGGTGATAAAGTCAAATGTTTTTATTGCG 105558 ||||||||||||| || | ||||||||| | ||||||||| ||||| |||| |||| Sbjct 115707 TGGCCGAAGCCGGATTCTTTTACACCGGCCAGGGTGATAAAACTAAATGCTTTTTCTGCG 115648 Query 105559 ACGGCGGCCTTAAGGATTGGGCAAACGCCGACGAACCGTGGGAGGAACATGCACGTTGGT 105618 ||||||| || ||||| |||| || | ||||| || ||||| | || || ||||||| Sbjct 115647 ACGGCGGTCTCAAGGACTGGGAGAATGACGACGTCCCCTGGGAACAGCACGCTCGTTGGT 115588 Query 105619 T 105619 | Sbjct 115587 T 115587 Score = 86.0 bits (94), Expect = 5e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 105120 AACTGGCCCGTGTCATTTTTGGAACCAAGTCAAATGGCCGCCAACGGGTTCTACTATTTG 105179 |||||||||||| |||| || || | | |||| |||||||||||||| | Sbjct 116074 AACTGGCCCGTGCCATTCCTGTCGCCGGAGCTACTGGCGCGGAACGGGTTCTACTACCTC 116015 Query 105180 GGGCGCGCGGACGAAGTGCGCTGCGCGTTCTGCAAAGTGGAAATAATGCGCTGGTTGGAG 105239 | | | ||||| || | ||||| |||||||| || || || ||| ||| ||| Sbjct 116014 AAGAGAGGCGACGAGGTCAGGTGCGCCTTCTGCAAGGTCGAGATCATGAAGTGGATGGTC 115955 Query 105240 GGCGACGACCCGGCCGTAGATCATAAACGATGGGCGCCACAGTGCCCGTT 105289 ||||| ||||| ||| |||||| | || |||||||| ||||||||||| Sbjct 115954 GGCGATGACCCCGCCACGGATCATCAGCGCTGGGCGCCGCAGTGCCCGTT 115905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423012184459000