Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq131 167 4e-36 seq221 165 2e-35 seq64 156 8e-33 seq148 104 4e-17 seq665 100 5e-16 seq272 96.9 6e-15 seq149 84.2 4e-11 >seq131 Length=856804 Score = 167 bits (184), Expect = 4e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 ||| ||||| || || || || ||||| ||||||||||| || || || | |||||||| Sbjct 307902 TACTAAGTGCAGGGTTGATTCCTTTTGAATGTTATAATCAGACAGGGTGCGTCCATCTTC 307961 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 ||||||||| ||||| || || ||||| || ||||| || ||||| ||||||||||| || Sbjct 307962 TAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTG 308021 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 ||||| || || || |||||| ||||| | | ||| |||||||| ||||| ||||| Sbjct 308022 GATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTT 308081 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| || | || || || || || ||||| Sbjct 308082 TCCAGTTAATGTTTTTACAAAGATTTGCAT 308111 Score = 167 bits (184), Expect = 4e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 ||||||||| || || || || ||||| ||||| ||||| || || || | |||||||| Sbjct 308130 TACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTC 308189 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 ||||||||| ||||| || || ||||| || ||||| || ||||| ||||||||||| || Sbjct 308190 TAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTG 308249 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 ||||| || || || |||||| ||||| | | ||| |||||||| ||||| ||||| Sbjct 308250 GATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTT 308309 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| || | || || || || || ||||| Sbjct 308310 TCCAGTTAATGTTTTTACAAAGATTTGCAT 308339 Score = 167 bits (184), Expect = 4e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 ||||||||| || || || || ||||| ||||| ||||| || || || | |||||||| Sbjct 308358 TACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTC 308417 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 ||||||||| ||||| || || ||||| || ||||| || ||||| ||||||||||| || Sbjct 308418 TAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTG 308477 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 ||||| || || || |||||| ||||| | | ||| |||||||| ||||| ||||| Sbjct 308478 GATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTT 308537 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| || | || || || || || ||||| Sbjct 308538 TCCAGTTAATGTTTTTACAAAGATTTGCAT 308567 Score = 167 bits (184), Expect = 4e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 ||||||||| || || || || ||||| ||||| ||||| || || || | |||||||| Sbjct 308586 TACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTC 308645 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 ||||||||| ||||| || || ||||| || ||||| || ||||| ||||||||||| || Sbjct 308646 TAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTG 308705 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 ||||| || || || |||||| ||||| | | ||| |||||||| ||||| ||||| Sbjct 308706 GATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTT 308765 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| || | || || || || || ||||| Sbjct 308766 TCCAGTTAATGTTTTTACAAAGATTTGCAT 308795 Score = 167 bits (184), Expect = 4e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 ||||||||| || || || || ||||| ||||| ||||| || || || | |||||||| Sbjct 308814 TACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTC 308873 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 ||||||||| ||||| || || ||||| || ||||| || ||||| ||||||||||| || Sbjct 308874 TAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTG 308933 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 || || || || || |||||| ||||| | | ||| |||||||| ||||| ||||| Sbjct 308934 GATTTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTT 308993 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | ||| || || || |||||||| Sbjct 308994 GCCAGTTAAGGTTTTCACAAAAATCTGCAT 309023 >seq221 Length=486136 Score = 165 bits (182), Expect = 2e-35 Identities = 178/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 68226 TTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTA 68285 ||| || |||| || | || || | || || || | || ||||| || |||||||| Sbjct 78335 TTTCAAATTCCGCCTCTGAGACGGAGAACTAAATGCAAGGTAGACTCCTTCTGGATGTTG 78394 Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || || || ||||| | || ||||| | |||||| || || || || || | |||||| Sbjct 78395 TAGTCAGAAAGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGG 78454 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || || ||||||||||||||||| || |||||||| || ||| |||||||| | Sbjct 78455 TCTGGAGGGATGCCTTCCTTGTCTTGGATTTTTGCCTTTACATTCTCTATGGTGTCGGAG 78514 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||| ||||| | |||||||||||| || || | |||||||||||| |||||||| Sbjct 78515 GGTTCGACTTCTAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 78570 Score = 150 bits (166), Expect = 3e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || || || || || |||||||| || || || ||||| | || ||||| | |||| Sbjct 78824 TGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCGTCTTCCAGCTGC 78883 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || || || | ||||||||||| || || ||||| |||||||| || || Sbjct 78884 TTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGGATACCTTCTTTGTCTTGGATTTTC 78943 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 || || || ||| || ||||||| | ||| ||||| |||||||||||||| || || Sbjct 78944 GCTTTTACATTCTCAATTGTGTCTGAAGGTTCGACTTCTAAGGTGATGGTTTTGCCAGTC 79003 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 | |||||||||||| |||||||| Sbjct 79004 AAGGTCTTGACGAAGATCTGCAT 79026 Score = 145 bits (160), Expect = 1e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || || || || || |||||||| || || || ||||| | || ||||| | |||| Sbjct 78596 TGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCGTCTTCCAGCTGC 78655 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || || || | ||||||||||| || || ||||| |||||||| || || Sbjct 78656 TTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGGATACCTTCTTTGTCTTGGATTTTC 78715 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 || || || ||| || ||||||| | ||| ||||| | |||||||||||| || || Sbjct 78716 GCTTTTACATTCTCAATTGTGTCTGAAGGTTCGACTTCTAGGGTGATGGTTTTGCCAGTC 78775 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 | |||||||||||| |||||||| Sbjct 78776 AAGGTCTTGACGAAGATCTGCAT 78798 Score = 145 bits (160), Expect = 1e-29 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||||||||| ||||| || | || || || ||||||||||| ||||| |||||||| Sbjct 79256 CCTCCGCGAAGACGCAAAACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAA 79315 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || || || || || || || || | || ||| || || ||||| Sbjct 79316 AGAGTACGTCCGTCCTCCAATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGTGGG 79375 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || ||||||||||| || || || || || || || || | | ||| ||| Sbjct 79376 ATTCCCTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATAGTATCCGAAGGTTCGACT 79435 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCTAT 68469 ||||| || ||||| ||||| || || || || || || ||||||||| || ||| Sbjct 79436 TCCAAAGTTATGGTCTTTCCAGTAAGCGTTTTTACAAAAATCTGCATTTTGATAT 79490 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | ||| | || || || || || || |||||||| || |||||| Sbjct 79028 CCACCACGCAGACGTAGTACGAGATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCGGAG 79087 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||||| || || || ||||| || | | |||||| || || || Sbjct 79088 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGGGGG 79147 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| || || ||||| ||| || || || || | | ||||| Sbjct 79148 ATGCCTTCCTTGTCTTGGATTTTAGCCTTCACGTTTTCAATAGTATCAGAAGGCTCTACC 79207 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || ||||| ||||| ||||| || || || |||||||| Sbjct 79208 TCTAACGTTATAGTTTTACCCGTAAGGGTTTTAACAAAGATCTGCAT 79254 >seq64 Length=1946208 Score = 156 bits (172), Expect = 8e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | ||| | ||| || | || | || || || ||||| || || || ||||| Sbjct 785701 CCTCCTCTAAGTCTCAACACAAGATGCAAGGTAGATTCCTTTTGAATATTGTAGTCGGAT 785760 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| || || || || |||||||| | || || || || |||||| Sbjct 785761 AAGGTACGACCATCTTCCAATTGTTTTCCAGCGAATATCAATCGCTGCTGATCTGGTGGA 785820 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||| ||||| ||||| || |||||||||||| | | || || Sbjct 785821 ATACCTTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCAGAGGCCTCAACC 785880 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | ||| |||||||| ||||| |||||||| ||||| ||||||||| || Sbjct 785881 TCTAGGGTAATGGTTTTACCCGTTAGGGTCTTAACGAAAATCTGCATTTTG 785931 >seq148 Length=419512 Score = 104 bits (114), Expect = 4e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 68337 CTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATG 68396 || || ||||| || || || || || |||||||| || || || ||||| ||||||| Sbjct 143737 CTCTGCTGGTCCGGAGGGATTCCCTCTTTGTCTTGTATTTTAGCTTTGACATTCTCGATG 143796 Query 68397 GTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATC 68456 ||||| | | ||| || || | |||||||||||| ||||||||||| || ||||| ||| Sbjct 143797 GTGTCCGAGGGTTCGACCTCGAGGGTGATGGTTTTCCCCGTGAGGGTTTTCACGAAAATC 143856 Query 68457 TGCAT 68461 ||||| Sbjct 143857 TGCAT 143861 >seq665 Length=13222 Score = 100 bits (110), Expect = 5e-16 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 268361 CCGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAG 268420 ||||| || ||||||| || ||||| |||| || || |||||||| ||||||||| Sbjct 7594 CCGCGGGTTATTTTTCTCGTTACGAAGTTCTCCCCCCGCCTCGGGCTCTCATGGTTGAAG 7535 Query 268421 AGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGT 268478 || | |||||| ||||||||||| ||||| ||||| | |||||||| || |||||| Sbjct 7534 AGTAAGCCGTTACACGCGAACATCCCATACGCCTCCCTATAGTTCACTACTATCCAGT 7477 >seq272 Length=237281 Score = 96.9 bits (106), Expect = 6e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 268361 CCGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAG 268420 ||||| || ||||||| || ||||| |||| || || |||||||| ||||||||| Sbjct 185955 CCGCGGGTTATTTTTCTCGTTACGAAGTTCTCCCCCCGCCTCGGGCTCTCATGGTTGAAG 185896 Query 268421 AGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGT 268478 || | |||||| ||||||||||| || || ||||| | |||||||| || |||||| Sbjct 185895 AGTAAGCCGTTACACGCGAACATCCCGTACGCCTCCCTATAGTTCACTACTATCCAGT 185838 >seq149 Length=636072 Score = 84.2 bits (92), Expect = 4e-11 Identities = 104/142 (73%), Gaps = 3/142 (2%) Strand=Plus/Minus Query 9891 ATTTAGAAGTCTGCGTCAATTGCAAACACGTTGTCGTCGGCATT---CATGACGCCCGCC 9947 ||||| || || || || | | ||||||||||| || | ||| ||| || ||| | Sbjct 239993 ATTTAAAACTCAGCATCTAAAGTGAACACGTTGTCATCAGGATTTGCCATCACTCCCCAC 239934 Query 9948 TTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGC 10007 |||||||||||| ||| ||| |||||||| | ||| ||||| |||||||| | Sbjct 239933 TTCTGGTACTCCCCGACCTTCTTCTCAAAGAAGTTCGTCTTACCCTCCAGGGAAATTAAG 239874 Query 10008 TCCATGAAGTCAAAGGGGTTCT 10029 | |||||||||||| || |||| Sbjct 239873 TTCATGAAGTCAAAAGGATTCT 239852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921560248089400