Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq445 210 2e-49 seq131 111 1e-19 seq221 84.2 2e-11 >seq445 Length=79264 Score = 210 bits (232), Expect = 2e-49 Identities = 404/589 (69%), Gaps = 19/589 (3%) Strand=Plus/Plus Query 84237 GGGTTGGCTCCTTTGCCTCCCGGAAATTCCCAATCGATGTCTACACCGTCGAAAAATTTC 84296 ||||| || ||||| || || || || ||||| || || || |||||||| || |||||| Sbjct 27226 GGGTTAGCACCTTTACCACCAGGGAACTCCCAGTCAATATCAACACCGTCAAAGAATTTC 27285 Query 84297 CATACTTGTAAAAACTCCTTAACCGAATTTACAAAAA-----CGTTT-CTTTTTTCAACA 84350 || | | || || ||||| || | |||||| || || || || ||| Sbjct 27286 CAGGTTAAAAGGAAATCTTTAACAGATTCTACAAATCGCTGTCGCTTACTCTTATCA--- 27342 Query 84351 TTGTGCATGAAATAAAACGGGTCCGACAACGTCCATCCTCCTATGGACGGAAGAATCTTT 84410 ||| | ||| | || || || | || ||||| || || || || || | |||||| Sbjct 27343 --GTGAA-GAAGAAGAAAGGATCAGCTAAAGTCCACCCACCAATTGATGGTAAAATCTTC 27399 Query 84411 AGGTGCGGGTTCGCCAATTTAGCTGCCATCAATTGTCCAAAATTGCCTTTATACGGTTCG 84470 | || || || || ||| || ||||||||| ||||||||||||||||| ||||| Sbjct 27400 AAGTCTGGTTTAGCTTGTTTCAATGACATCAATTGACCAAAATTGCCTTTATAAGGTTCA 27459 Query 84471 TTCCAAGCGGACACGCCCTTTTGGGGCTTTTGTACGGCGGCCCACGGATCGTGGATGGCA 84530 ||||| | ||| | || |||| || || |||| || ||||| ||||| ||||||| | Sbjct 27460 TTCCAGGAGGATAGACCTCTTTGAGGTTTCTGTAAAGCAGCCCAAGGATCATGGATGGAA 27519 Query 84531 ATTTTAAAATCCGCACGTCCCCTGCACGATCGTTGCAGAGATTCGAAACTACCGGGTATC 84590 | |||||||| | || || ||||| || || || || | || ||||| || || Sbjct 27520 ACCTTAAAATCTTCCCGACCACTGCATGAACGCTGTAGTGCTTGAAAACTTCCCTCGATT 27579 Query 84591 ACTTTGAGAGCATCGTTTATTCCATTACCGCCGCAAATGGGTATGAAACCGTACAACAAG 84650 |||| | | || || || |||| ||| || || || |||||||||||||| || ||| Sbjct 27580 TCTTTTAAACTGTCATTAATGCCATCACCCCCACATATCGGTATGAAACCGTA-AAGAAG 27638 Query 84651 -TGTGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAATTGCGCCCGTACACTCCCCA 84709 |||| | |||||| | || || || ||||| || || | ||| || ||||| Sbjct 27639 ATGTGTGAGATTTGGAATCGGCACACGATCGACGGGGAATTTCCTGGGGTATACACCCCA 27698 Query 84710 TTCAACAAAATACGCAGCAACCGTTTTA----TCGTCTCTTCTGCCCGGTTTGTTGTTTT 84765 |||||| || || || |||| |||| ||| | || || |||||||| |||| Sbjct 27699 TTCAACGAAGTAAGCTCCAACGACTTTACCAGACGTTTGTT-TGAATGGTTTGTTCTTTT 27757 Query 84766 CCCGCCATGTATATTCCAGCGGAGCCAAATGACCGCCGTCGGTGTCTGC 84814 | | | || |||||| | ||| | | ||||| ||||||||||| || Sbjct 27758 CTCCCATTGAATATTCTAACGGTGGAAGATGACTTCCGTCGGTGTCAGC 27806 >seq131 Length=856804 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||| ||||| || ||| | ||||| ||||| |||||||| || || ||||| ||| | Sbjct 309027 CAAGATGCAGATTTTTGTGAAAACCTTAACTGGCAAAACGATCACTTTGGAAGTTGAACC 308968 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | | || ||| | | || |||| ||||| || || || || | || | | Sbjct 308967 CTCCGACACGATCGAGAATGTTAAAGCTAAAATCCAGGACAAGGAAGGAATTCCCCCAGA 308908 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 ||| ||||||||||||||||| ||||| || |||||||| | || || | ||||| Sbjct 308907 CCAGCAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTA 308848 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||| ||||| |||||||| || || || ||||| || | || ||||||| Sbjct 308847 CAACATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGG 308797 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||||||||| || ||||| || || ||||| ||| || | Sbjct 308339 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308280 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || |||| || || || || || || | || | |||| Sbjct 308279 GACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 308220 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||||||||||||||| ||||| || |||||||| | || || | |||||||| Sbjct 308219 CAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAAC 308160 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| |||||||| || || || ||||| || | || ||||||| Sbjct 308159 ATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGG 308113 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||||||||| || ||||| || || ||||| ||| || | Sbjct 308567 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308508 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || |||| || || || || || || | || | |||| Sbjct 308507 GACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 308448 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||||||||||||||| ||||| || |||||||| | || || | |||||||| Sbjct 308447 CAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAAC 308388 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| |||||||| || || || ||||| || | || ||||||| Sbjct 308387 ATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGG 308341 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||||||||| || ||||| || || ||||| ||| || | Sbjct 308795 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308736 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || |||| || || || || || || | || | |||| Sbjct 308735 GACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 308676 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||||||||||||||| ||||| || |||||||| | || || | |||||||| Sbjct 308675 CAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAAC 308616 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| |||||||| || || || ||||| || | || ||||||| Sbjct 308615 ATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGG 308569 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||||||||| || ||||| || || ||||| ||| || | Sbjct 308111 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308052 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || |||| || || || || || || | || | |||| Sbjct 308051 GACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 307992 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||||||||||||||| ||||| || |||||||| | || || | ||||| || Sbjct 307991 CAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTATAAC 307932 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| |||||||| || || || | ||| || | || ||||| ||| Sbjct 307931 ATTCAAAAGGAATCAACCCTGCACTTAGTACTAAGATTGCGAGGGGGA 307884 >seq221 Length=486136 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || ||| | ||||| | || || || ||||| || ||||| ||| | Sbjct 79486 CAAAATGCAGATTTTTGTAAAAACGCTTACTGGAAAGACCATAACTTTGGAAGTCGAACC 79427 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | || || | | || |||| |||||| || |||||||| | || | | Sbjct 79426 TTCGGATACTATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAGGGAATCCCACCAGA 79367 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || || || | |||||||| || |||||| | || || | ||| | ||||||| Sbjct 79366 TCAGCAACGATTGATCTTTGCAGGAAAACAATTGGAGGACGGACGTACTCTTTCCGATTA 79307 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||| ||||| || || |||||||||||| | || || ||| | || ||||| Sbjct 79306 CAACATTCAAAAAGAGTCTACTCTTCATCTTGTTTTGCGTCTTCGCGGAGG 79256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358101252734830